Heinz Stockinger

According to our database, Heinz Stockinger authored at least 57 papers between 2000 and 2022.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of three.

2022

RAxML Grove: an empirical phylogenetic tree database.

Dimitri Höhler, Wayne Pfeiffer, Vassilios Ioannidis, Heinz Stockinger, Alexandros Stamatakis

Bioinform., 2022

2021

Expasy, the Swiss Bioinformatics Resource Portal, as designed by its users.

Severine Duvaud, Chiara Gabella, Frédérique Lisacek, Heinz Stockinger, Vassilios Ioannidis, Christine Durinx

Nucleic Acids Res., 2021

2020

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences.

Rachel Drysdale, Charles E. Cook, Robert Petryszak, Vivienne Baillie Gerritsen, Mary Barlow, Elisabeth Gasteiger, Franziska Gruhl, Jürgen Haas, Jerry Lanfear, Rodrigo Lopez, Nicole Redaschi, Heinz Stockinger, Daniel Teixeira, Aravind Venkatesan, Alex Bateman, Alan J. Bridge, Guy Cochrane, Robert D. Finn, Frank Oliver Glöckner, Marc Hanauer, Thomas M. Keane, Andrew Leach, Luana Licata, Per Oksvold, Sandra E. Orchard, Christine A. Orengo, Helen E. Parkinson, Bengt Persson, Pablo Porras, Jordi Rambla, Ana Rath, Charlotte Rodwell, Ugis Sarkans, Dietmar Schomburg, Ian Sillitoe, J. Dylan Spalding, Mathias Uhlén, Sameer Velankar, Juan Antonio Vizcaíno, Kalle von Feilitzen, Christian von Mering, Andrew D. Yates, Niklas Blomberg, Christine Durinx, Johanna R. McEntyre

Bioinform., 2020

SPHN - The BioMedIT Network: A Secure IT Platform for Research with Sensitive Human Data.

Diana Coman Schmid, Katrin Crameri, Sabine Oesterle, Bernd Rinn, Thierry Sengstag, Heinz Stockinger, Leila T. Alexander, Jonathan Barda, Christian Bolliger, Urban Borstnik, Gerhard Bräunlich, Olivier Byrde, Jérôme Dauvillier, Robin Engler, Pablo Escobar Lopez, Volker Flegel, Martin Fox, Sofia Georgakopoulou, Jani Heikkinen, Martin Jacquot, Nicolas Kowenski, Guillermo Losilla, Sergio Maffioletti, Jorge Molina, Diego Moreno, Allen Neeser, Michal Okoniewski, Warren Paulus, Kevin Sayers, Torsten Schwede, Jaroslaw Surkont, Richard Wartenburger, Thomas Wüst

Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020

2019

Enabling semantic queries across federated bioinformatics databases.

Ana Claudia Sima, Tarcisio Mendes de Farias, Erich Zbinden, Maria Anisimova, Manuel Gil, Heinz Stockinger, Kurt Stockinger, Marc Robinson-Rechavi, Christophe Dessimoz

Database J. Biol. Databases Curation, 2019

2018

ViPIOS - VIenna Parallel Input Output System: Language, Compiler and Advanced Data Structure Support for Parallel I/O Operations.

Erich Schikuta, Helmut Wanek, Heinz Stockinger, Kurt Stockinger, Thomas Fürle, Oliver Jorns, Christoph Löffelhardt, Peter Brezany, Minh Dang, Thomas A. Mück

CoRR, 2018

2016

Tools and data services registry: a community effort to document bioinformatics resources.

Jon C. Ison, Kristoffer Rapacki, Hervé Ménager, Matús Kalas, Emil Rydza, Piotr Chmura, Christian Anthon, Niall Beard, Karel Berka, Dan M. Bolser, Tim Booth, Anthony Bretaudeau, Jan Brezovsky, Rita Casadio, Gianni Cesareni, Frederik Coppens, Michael Cornell, Gianmauro Cuccuru, Kristian Davidsen, Gianluca Della Vedova, Tunca Dogan, Olivia Doppelt-Azeroual, Laura Emery, Elisabeth Gasteiger, Thomas Gatter, Tatyana Goldberg, Marie Grosjean, Björn A. Grüning, Manuela Helmer-Citterich, Hans Ienasescu, Vassilios Ioannidis, Martin Closter Jespersen, Rafael C. Jiménez, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe, Jing-Woei Li, Luana Licata, Fabien Mareuil, Ivan Micetic, Rune Møllegaard Friborg, Sébastien Moretti, Chris Morris, Steffen Möller, Aleksandra Nenadic, Hedi Peterson, Giuseppe Profiti, Peter M. Rice, Paolo Romano, Paola Roncaglia, Rabie Saidi, Andrea Schafferhans, Veit Schwämmle, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger, Radka Svobodová Vareková, Silvio C. E. Tosatto, Victor de la Torre, Paolo Uva, Allegra Via, Guy Yachdav, Federico Zambelli, Gert Vriend, Burkhard Rost, Helen E. Parkinson, Peter Løngreen, Søren Brunak

Nucleic Acids Res., 2016

2015

Coev-web: a web platform designed to simulate and evaluate coevolving positions along a phylogenetic tree.

Linda Dib, Xavier Meyer, Panu Artimo, Vassilios Ioannidis, Heinz Stockinger, Nicolas Salamin

BMC Bioinform., 2015

TRAL: tandem repeat annotation library.

Elke Schaper, Alexander Korsunsky, Julija Pecerska, Antonio Messina, Riccardo Murri, Heinz Stockinger, Stefan Zoller, Ioannis Xenarios, Maria Anisimova

Bioinform., 2015

2014

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.

Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel

Nucleic Acids Res., 2014

Selectome update: quality control and computational improvements to a database of positive selection.

Sébastien Moretti, Balazs Laurenczy, Walid H. Gharib, Briséïs Castella, Arnold Kuzniar, Hannes Schabauer, Romain A. Studer, Mario Valle, Nicolas Salamin, Heinz Stockinger, Marc Robinson-Rechavi

Nucleic Acids Res., 2014

Optimization strategies for fast detection of positive selection on phylogenetic trees.

Mario Valle, Hannes Schabauer, Christoph Pacher, Heinz Stockinger, Alexandros Stamatakis, Marc Robinson-Rechavi, Nicolas Salamin

Bioinform., 2014

2013

Towards a Swiss National Research Infrastructure.

Peter Z. Kunszt, Sergio Maffioletti, Dean Flanders, Markus Eurich, Eryk Schiller, Thomas Michael Bohnert, Andy Edmonds, Heinz Stockinger, Almerima Jamakovic-Kapic, Sigve Haug, Placi Flury, Simon Leinen

Proceedings of the Euro-Par 2013: Parallel Processing Workshops, 2013

2012

ExPASy: SIB bioinformatics resource portal.

Panu Artimo, Manohar Jonnalagedda, Konstantin Arnold, Delphine Baratin, Gábor Csárdi, Edouard De Castro, Severine Duvaud, Volker Flegel, Arnaud Fortier, Elisabeth Gasteiger, Aurélien Grosdidier, Céline Hernandez, Vassilios Ioannidis, Dmitri Kuznetsov, Robin Liechti, Sébastien Moretti, Khaled Mostaguir, Nicole Redaschi, Grégoire Rossier, Ioannis Xenarios, Heinz Stockinger

Nucleic Acids Res., 2012

A heterogeneous computing environment to solve the 768-bit RSA challenge.

Thorsten Kleinjung, Joppe W. Bos, Arjen K. Lenstra, Dag Arne Osvik, Kazumaro Aoki, Scott Contini, Jens Franke, Emmanuel Thomé, Pascal Jermini, Michela Thiémard, Paul C. Leyland, Peter L. Montgomery, Andrey Timofeev, Heinz Stockinger

Clust. Comput., 2012

SlimCodeML: An Optimized Version of CodeML for the Branch-Site Model.

Hannes Schabauer, Mario Valle, Christoph Pacher, Heinz Stockinger, Alexandros Stamatakis, Marc Robinson-Rechavi, Ziheng Yang, Nicolas Salamin

Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution.

Sébastien Moretti, Riccardo Murri, Sergio Maffioletti, Arnold Kuzniar, Briséïs Castella, Nicolas Salamin, Marc Robinson-Rechavi, Heinz Stockinger

Proceedings of the HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, 2012

2010

The EMBRACE web service collection.

Steve Pettifer, Jon C. Ison, Matús Kalas, Dave Thorne, Philip McDermott, Inge Jonassen, Ali Liaquat, José María Fernández, Jose Manuel Rodriguez, David G. Pisano, Christophe Blanchet, Mahmut Uludag, Peter M. Rice, Edita Bartaseviciute, Kristoffer Rapacki, Maarten L. Hekkelman, Olivier Sand, Heinz Stockinger, Andrew B. Clegg, Erik Bongcam-Rudloff, Jean Salzemann, Vincent Breton, Teresa K. Attwood, Graham Cameron, Gert Vriend

Nucleic Acids Res., 2010

A performance study on the synchronisation of heterogeneous Grid databases using CONStanza.

Gianni Pucciani, Andrea Domenici, Flavia Donno, Heinz Stockinger

Future Gener. Comput. Syst., 2010

Phylogenetic Code in the Cloud - Can it Meet the Expectations?

Adam Kraut, Sébastien Moretti, Marc Robinson-Rechavi, Heinz Stockinger, Dean Flanders

Proceedings of the Healthgrid Applications and Core Technologies, 2010

2009

Large-Scale Co-Phylogenetic Analysis on the Grid.

Heinz Stockinger, Alexander F. Auch, Markus Göker, Jan P. Meier-Kolthoff, Alexandros Stamatakis

Int. J. Grid High Perform. Comput., 2009

Special Section: Defining the grid, experiences and future trends.

George A. Gravvanis, John P. Morrison, Heinz Stockinger

Future Gener. Comput. Syst., 2009

Business in the Grid

Erich Schikuta, Thomas Weishäupl, Flavia Donno, Heinz Stockinger, Elisabeth Vinek, Helmut Wanek, Christoph Witzany, Irfan Ul Haq

CoRR, 2009

2008

Experience using web services for biological sequence analysis.

Heinz Stockinger, Teresa K. Attwood, Shahid Nadeem Chohan, Richard G. Côté, Philippe Cudré-Mauroux, Laurent Falquet, Pedro L. Fernandes, Robert D. Finn, Taavi Hupponen, Eija Korpelainen, Alberto Labarga, Aurélie Laugraud, Tania Lima, Evangelos Pafilis, Marco Pagni, Steve Pettifer, Isabelle Phan, Nazim Rahman

Briefings Bioinform., 2008

A Multi-protocol Bioinformatics Web Service: Use SOAP, Take a REST or Go with HTML.

Marco Pagni, Jörg Hau, Heinz Stockinger

Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 2008

Initializing a National Grid Infrastructure - Lessons Learned from the Swiss National Grid Association Seed Project.

Nabil Abdennadher, Peter Engel, Derek Feichtinger, Dean Flanders, Placi Flury, Sigve Haug, Pascal Jermini, Sergio Maffioletti, Cesare Pautasso, Heinz Stockinger, Wibke Sudholt, Michela Thiémard, Nadya Williams, Christoph Witzig

Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 2008

2007

Defining the grid: a snapshot on the current view.

Heinz Stockinger

J. Supercomput., 2007

Data Intensive and Network Aware (DIANA) Grid Scheduling.

Richard McClatchey, Ashiq Anjum, Heinz Stockinger, Arshad Ali, Ian Willers, Michael Thomas

J. Grid Comput., 2007

Scheduling in Data Intensive and Network Aware (DIANA) Grid Environments

Richard McClatchey, Ashiq Anjum, Heinz Stockinger, Arshad Ali, Ian Willers, Michael Thomas

CoRR, 2007

2006

Grid Computing: A Critical Discussion on Business Applicability.

Heinz Stockinger

IEEE Distributed Syst. Online, 2006

Grid Data Management: Minisymposium Abstract.

Siegfried Benkner, Heinz Stockinger

Proceedings of the Applied Parallel Computing. State of the Art in Scientific Computing, 2006

Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems.

Heinz Stockinger, Marco Pagni, Lorenzo Cerutti, Laurent Falquet

Proceedings of the Second International Conference on e-Science and Grid Technologies (e-Science 2006), 2006

The SwissBioGrid Project: Objectivse, Preliminary Results and Lessons Learned.

Michael Podvinec, Sergio Maffioletti, Peter Z. Kunszt, Konstantin Arnold, Lorenzo Cerutti, Bruno Nyffeler, Ralph Schlapbach, Can Türker, Heinz Stockinger, Arthur J. Thomas, Manuel C. Peitsch, Torsten Schwede

Proceedings of the Second International Conference on e-Science and Grid Technologies (e-Science 2006), 2006

DIANA Scheduling Hierarchies for Optimizing Bulk Job Scheduling.

Ashiq Anjum, Richard McClatchey, Heinz Stockinger, Arshad Ali, Ian Willers, Michael Thomas, Muhammad Sagheer, Khawar Hasham, Omer Alvi

Proceedings of the Second International Conference on e-Science and Grid Technologies (e-Science 2006), 2006

Relaxed Data Consistency with CONStanza.

Andrea Domenici, Flavia Donno, Gianni Pucciani, Heinz Stockinger

Proceedings of the Sixth IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2006), 2006

2005

File-based replica management.

Peter Z. Kunszt, Erwin Laure, Heinz Stockinger, Kurt Stockinger

Future Gener. Comput. Syst., 2005

Performance engineering in data Grids.

Erwin Laure, Heinz Stockinger, Kurt Stockinger

Concurr. Pract. Exp., 2005

Matchmaking, Datasets and Physics Analysis.

Heinz Stockinger, Flavia Donno, Giulio Eulisse, Mirco Mazzucato, Conrad Steenberg

Proceedings of the 34th International Conference on Parallel Processing Workshops (ICPP 2005 Workshops), 2005

2004

Editorial.

Heinz Stockinger

J. Grid Comput., 2004

Replica Management in the European DataGrid Project.

David G. Cameron, James Casey, Leanne Guy, Peter Z. Kunszt, Sophie Lemaitre, Gavin McCance, Heinz Stockinger, Kurt Stockinger, Giuseppe Andronico, William H. Bell, Itzhak Ben-Akiva, Diana Bosio, Radovan Chytracek, Andrea Domenici, Flavia Donno, Wolfgang Hoschek, Erwin Laure, Levi Lucio, A. Paul Millar, Livio Salconi, Ben Segal, Mika Silander

J. Grid Comput., 2004

A Proxy Service for the xrootd Data Server.

Andrew Hanushevsky, Heinz Stockinger

Proceedings of the Scientific Applications of Grid Computing, First International Workshop, 2004

EU Funded Grid Development in Europe.

Paul Graham, Matti Heikkurinen, Jarek Nabrzyski, Ariel Oleksiak, Mark Parsons, Heinz Stockinger, Kurt Stockinger, Maciej Stroinski, Jan Weglarz

Proceedings of the Grid Computing, 2004

Data Grid tutorials with hands-on experience.

Heinz Stockinger, Flavia Donno, Roberto Puccinelli, Kurt Stockinger

Proceedings of the 4th IEEE/ACM International Symposium on Cluster Computing and the Grid (CCGrid 2004), 2004

2003

Grid Data Management in Action: Experience in Running and Supporting Data Management Services in the EU DataGrid Project

Heinz Stockinger, Flavia Donno, Erwin Laure, Shahzad Muzaffar, Peter Z. Kunszt, Giuseppe Andronico, A. Paul Millar

CoRR, 2003

Advanced Replica Management with Reptor.

Peter Z. Kunszt, Erwin Laure, Heinz Stockinger, Kurt Stockinger

Proceedings of the Parallel Processing and Applied Mathematics, 2003

Access Cost Estimation for Unified Grid Storage Systems.

Kurt Stockinger, Heinz Stockinger, Lukasz Dutka, Renata Slota, Darin Nikolow, Jacek Kitowski

Proceedings of the 4th International Workshop on Grid Computing (GRID 2003), 2003

2002

Grid Data Mirroring Package (GDMP).

Heinz Stockinger, Asad Samar, Shahzad Muzaffar, Flavia Donno

Sci. Program., 2002

Economic models for resource management and scheduling in Grid computing.

Rajkumar Buyya, David Abramson, Jonathan Giddy, Heinz Stockinger

Concurr. Comput. Pract. Exp., 2002

File and Object Replication in Data Grids.

Heinz Stockinger, Asad Samar, Koen Holtman, William E. Allcock, Ian T. Foster, Brian Tierney

Clust. Comput., 2002

Giggle: a framework for constructing scalable replica location services.

Ann L. Chervenak, Ewa Deelman, Ian T. Foster, Leanne Guy, Wolfgang Hoschek, Adriana Iamnitchi, Carl Kesselman, Peter Z. Kunszt, Matei Ripeanu, Robert Schwartzkopf, Heinz Stockinger, Kurt Stockinger, Brian Tierney

Proceedings of the 2002 ACM/IEEE conference on Supercomputing, 2002

HTTP redirection for replica catalogue lookups in data grids.

Heinz Stockinger, Andrew Hanushevsky

Proceedings of the 2002 ACM Symposium on Applied Computing (SAC), 2002

2001

Economic Models for Management of Resources in Grid Computing

Rajkumar Buyya, Heinz Stockinger, Jonathan Giddy, David Abramson

CoRR, 2001

Towards a Cost Model for Distributed and Replicated Data Stores.

Heinz Stockinger, Kurt Stockinger, Erich Schikuta, Ian Willers

Proceedings of the Ninth Euromicro Workshop on Parallel and Distributed Processing, 2001

Distributed Database Management Systems and the Data Grid.

Heinz Stockinger

Proceedings of the 18th IEEE Symposium on Mass Storage Systems, 2001

Models for Replica Synchronisation and Consistency in a Data Grid.

Dirk Düllmann, Wolfgang Hoschek, Francisco Javier Jaén-Martínez, Ben Segal, Heinz Stockinger, Kurt Stockinger, Asad Samar

Proceedings of the 10th IEEE International Symposium on High Performance Distributed Computing (HPDC-10 2001), 2001

Data Management for Grid Environments.

Heinz Stockinger, Omer F. Rana, Reagan W. Moore, André Merzky

Proceedings of the High-Performance Computing and Networking, 9th International Conference, 2001

2000

Data Management in an International Data Grid Project.

Wolfgang Hoschek, Francisco Javier Jaén-Martínez, Asad Samar, Heinz Stockinger, Kurt Stockinger

Proceedings of the Grid Computing, 2000