Upinder S. Bhalla

According to our database, Upinder S. Bhalla authored at least 30 papers between 1988 and 2023.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2023

Using sensitivity analyses to understand bistable system behavior.

Vandana Sreedharan, Upinder S. Bhalla, Naren Ramakrishnan

BMC Bioinform., December, 2023

2021

HillTau: A fast, compact abstraction for model reduction in biochemical signaling networks.

Upinder S. Bhalla

PLoS Comput. Biol., 2021

SWITCHES: Searchable Web Interface for Topologies of CHEmical Switches.

Gubbi Vani HarshaRani, S. Moza, Naren Ramakrishnan, Upinder S. Bhalla

Bioinform., 2021

2019

INDEX-db: The Indian Exome Reference Database (Phase I).

Husayn Ahmed P., Vidhya V., Ravi Prabhakar More, Biju Viswanath, Sanjeev Jain, Mahendra S. Rao, Odity Mukherjee, Naren P. Rao, Janardhanan C. Narayanaswamy, Palanimuthu T. Sivakumar, Arun Kandaswamy, Muralidharan Kesavan, Urvakhsh-Meherwan Mehta, Ganesan Venkatasubramanian, John P. John, Meera Purushottam, Ramakrishnan Kannan, Bhupesh Mehta, Thennarasu Kandavel, B. Binukumar, Jitender Saini, Deepak Jayarajan, A. Shyamsundar, Sydney Moirangthem, Kumar G. Vijay, Jagadisha Thirthalli, Prabha S. Chandra, Bangalore N. Gangadhar, Pratima Murthy, Mitradas M. Panicker, Upinder S. Bhalla, Sumantra Chattarji, Vivek Benegal, Mathew Varghese, Janardhan Y. C. Reddy, Padinjat Raghu

J. Comput. Biol., 2019

2018

FindSim: A Framework for Integrating Neuronal Data and Signaling Models.

Nisha A. Viswan, Gubbi Vani HarshaRani, Melanie I. Stefan, Upinder S. Bhalla

Frontiers Neuroinformatics, 2018

2017

Multirate method for co-simulation of electrical-chemical systems in multiscale modeling.

Ekaterina Brocke, Mikael Djurfeldt, Upinder S. Bhalla, Jeanette Hellgren Kotaleski, Michael Hanke

J. Comput. Neurosci., 2017

2016

Role of DARPP-32 and ARPP-21 in the Emergence of Temporal Constraints on Striatal Calcium and Dopamine Integration.

Anu G. Nair, Upinder S. Bhalla, Jeanette Hellgren Kotaleski

PLoS Comput. Biol., 2016

NSDF: Neuroscience Simulation Data Format.

Subhasis Ray, Chaitanya Chintaluri, Upinder S. Bhalla, Daniel K. Wójcik

Neuroinformatics, 2016

Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations.

Ekaterina Brocke, Upinder S. Bhalla, Mikael Djurfeldt, Jeanette Hellgren Kotaleski, Michael Hanke

Frontiers Comput. Neurosci., 2016

2015

Spike Detection for Large Neural Populations Using High Density Multielectrode Arrays.

Jens-Oliver Muthmann, Hayder Amin, Evelyne Sernagor, Alessandro Maccione, Dagmara Panas, Luca Berdondini, Upinder S. Bhalla, Matthias H. Hennig

Frontiers Neuroinformatics, 2015

2014

MOOSE, the Multiscale Object-Oriented Simulation Environment.

Niraj Dudani, Upinder S. Bhalla, Subhasis Ray

Proceedings of the Encyclopedia of Computational Neuroscience, 2014

2012

Summation in the Hippocampal CA3-CA1 Network Remains Robustly Linear Following Inhibitory Modulation and Plasticity, but Undergoes Scaling and Offset Transformations.

Dhanya Parameshwaran, Upinder S. Bhalla

Frontiers Comput. Neurosci., 2012

2011

Minimum Information About a Simulation Experiment (MIASE).

Dagmar Waltemath, Richard R. Adams, Daniel A. Beard, Frank T. Bergmann, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah, Mike T. Cooling, Jonathan Cooper, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka, Peter J. Hunter, Edda Klipp, Camille Laibe, Andrew K. Miller, Ion I. Moraru, David P. Nickerson, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro, Henning Schmidt, Jacky L. Snoep, Dominic P. Tolle, Olaf Wolkenhauer, Nicolas Le Novère

PLoS Comput. Biol., 2011

Multiscale interactions between chemical and electric signaling in LTP induction, LTP reversal and dendritic excitability.

Upinder S. Bhalla

Neural Networks, 2011

2010

NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail.

Padraig Gleeson, Sharon M. Crook, Robert C. Cannon, Michael L. Hines, Guy O. Billings, Matteo Farinella, Thomas M. Morse, Andrew P. Davison, Subhasis Ray, Upinder S. Bhalla, Simon R. Barnes, Yoana D. Dimitrova, Angus Silver

PLoS Comput. Biol., 2010

Run-Time Interoperability Between Neuronal Network Simulators Based on the MUSIC Framework.

Mikael Djurfeldt, Johannes Hjorth, Jochen M. Eppler, Niraj Dudani, Moritz Helias, Tobias C. Potjans, Upinder S. Bhalla, Markus Diesmann, Jeanette Hellgren Kotaleski, Örjan Ekeberg

Neuroinformatics, 2010

2009

Signaling Logic of Activity-Triggered Dendritic Protein Synthesis: An mTOR Gate But Not a Feedback Switch.

Pragati Jain, Upinder S. Bhalla

PLoS Comput. Biol., 2009

Computing with Proteins.

Naren Ramakrishnan, Upinder S. Bhalla, John J. Tyson

Computer, 2009

2008

Memory Switches in Chemical Reaction Space.

Naren Ramakrishnan, Upinder S. Bhalla

PLoS Comput. Biol., 2008

How To Record a Million Synaptic Weights in a Hippocampal Slice.

Upinder S. Bhalla

PLoS Comput. Biol., 2008

PyMOOSE: interoperable scripting in Python for MOOSE.

Subhasis Ray, Upinder S. Bhalla

Frontiers Neuroinformatics, 2008

2007

Interoperability of Neuroscience Modeling Software: Current Status and Future Directions.

Robert C. Cannon, Marc-Oliver Gewaltig, Padraig Gleeson, Upinder S. Bhalla, Hugo Cornelis, Michael L. Hines, Fredrick W. Howell, Eilif Mueller, Joel R. Stiles, Stefan Wils, Erik De Schutter

Neuroinformatics, 2007

2005

Molecular Switches at the Synapse Emerge from Receptor and Kinase Traffic.

Arnold Hayer, Upinder S. Bhalla

PLoS Comput. Biol., 2005

2004

Adaptive stochastic-deterministic chemical kinetic simulations.

Karan Vasudeva, Upinder S. Bhalla

Bioinform., 2004

2003

Managing models of signaling networks.

Upinder S. Bhalla

Neurocomputing, 2003

The Database of Quantitative Cellular Signaling: management and analysis of chemical kinetic models of signaling networks.

Sudhir Sivakumaran, Sridhar Hariharaputran, Jyoti Mishra, Upinder S. Bhalla

Bioinform., 2003

2002

Biochemical Signaling Networks Decode Temporal Patterns of Synaptic Input.

Upinder S. Bhalla

J. Comput. Neurosci., 2002

The chemical organization of signaling interactions.

Upinder S. Bhalla

Bioinform., 2002

1997

Multiday Recordings from Olfactory Bulb Neurons in Awake Freely Moving Rats: Spatially and Temporally Organized Variability in Odorant Response Propertie.

Upinder S. Bhalla, James M. Bower

J. Comput. Neurosci., 1997

1988

GENESIS: A System for Simulating Neural Networks.

Matthew A. Wilson, Upinder S. Bhalla, John D. Uhley, James M. Bower

Proceedings of the Advances in Neural Information Processing Systems 1, 1988