Dagmar Waltemath

Affiliations:
  • University of Rostock, Germany


According to our database1, Dagmar Waltemath authored at least 76 papers between 2010 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

Online presence:

On csauthors.net:

Bibliography

2023
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022.
J. Integr. Bioinform., March, 2023

TAPP: Defining standard provenance information for clinical research data and workflows - Obstacles and opportunities.
Proceedings of the Companion Proceedings of the ACM Web Conference 2023, 2023

MeDaX project plan: How to sustainably improve biomedical (research) data management.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Experiences from compiling a FAIR survey in the German Network University Medicine.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

First Steps Towards the FAIRification of the DZD CORE DATASET at the German Center for Diabetes Research.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Contributions to the reuse and reproducibility of computational biology models.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Representing Sex and Gender Information in Biomedical Research.
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

Assessing the FAIRness of Deep Learning Models in Cardiovascular Disease Using Computed Tomography Images: Data and Code Perspective.
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

Insights into the FAIRness of the German Network University Medicine: A Survey.
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

Exploring New Possibilities for Research Data Exploration Using the Example of the German Core Data Set.
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

Harvesting the Low Hanging Fruits From the FAIRtree.
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

Exploring Use Cases for CovidGraph.
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

Identifying Relevant FHIR Elements for Data Quality Assessment in the German Core Data Set.
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

Herding Cats in Pandemic Times - Towards Technological and Organizational Convergence of Heterogeneous Solutions for Investigating and Mastering the Pandemic in University Medical Centers.
Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

Experiences From FAIRifying Community Data and FAIR Infrastructure in Biomedical Research Domains.
Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

A Survey on the Current Status of Research Data Management in Mecklenburg-Vorpommern Preliminary Results for a Questionnaire Study Among Researchers.
Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

Building the Next Generation of Data Savvy Biomedical Researchers.
Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

2022
CovidGraph: a graph to fight COVID-19.
Bioinform., October, 2022

Addressing <i>barriers in comprehensiveness, accessibility, reusability, interoperability and reproducibility of computational models in systems biology</i>.
Briefings Bioinform., 2022

Disparities in Regional Publication Trends on the Topic of Artificial Intelligence in Biomedical Science Over the Last Five Years: A Bibliometric Analysis.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022

CovidGraph: Integrating COVID-19 Data.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022

2021
The simulation experiment description markup language (SED-ML): language specification for level 1 version 4.
J. Integr. Bioinform., 2021

Specifications of standards in systems and synthetic biology: status and developments in 2021.
J. Integr. Bioinform., 2021

OMEX metadata specification (version 1.2).
J. Integr. Bioinform., 2021

SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks.
Briefings Bioinform., 2021

COVIDGraph: Connecting Biomedical COVID-19 Resources and Computational Biology Models.
Proceedings of the 2nd Workshop on Search, 2021


Investigating the FAIR Equivalency in National Guidance in Health in Kenya.
Proceedings of the Applying the FAIR Principles to Accelerate Health Research in Europe in the Post COVID-19 Era, 2021

2020
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).
J. Integr. Bioinform., 2020

Specifications of standards in systems and synthetic biology: status and developments in 2020.
J. Integr. Bioinform., 2020

Open modeling and exchange (OMEX) metadata specification version 1.0.
J. Integr. Bioinform., 2020

Towards standardization guidelines for in silico approaches in personalized medicine.
J. Integr. Bioinform., 2020

2019
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.
J. Integr. Bioinform., 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
J. Integr. Bioinform., 2019

Harmonizing semantic annotations for computational models in biology.
Briefings Bioinform., 2019

2018
Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation.
PLoS Comput. Biol., 2018

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.
J. Integr. Bioinform., 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
J. Integr. Bioinform., 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
J. Integr. Bioinform., 2018

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3).
J. Integr. Bioinform., 2018

Evolution of computational models in BioModels Database and the Physiome Model Repository.
BMC Syst. Biol., 2018

Identifying frequent patterns in biochemical reaction networks: a workflow.
Database J. Biol. Databases Curation, 2018

Notions of similarity for systems biology models.
Briefings Bioinform., 2018

2017
The JWS online simulation database.
Bioinform., 2017

SED-ML web tools: generate, modify and export standard-compliant simulation studies.
Bioinform., 2017

A brief history of COMBINE.
Proceedings of the 2017 Winter Simulation Conference, 2017

2016
How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine.
IEEE Trans. Biomed. Eng., 2016

Toward Community Standards and Software for Whole-Cell Modeling.
IEEE Trans. Biomed. Eng., 2016

Finding patterns in biochemical reaction networks.
PeerJ Prepr., 2016

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.
J. Integr. Bioinform., 2016

A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in <i>Drosophila </i>embryos.
F1000Research, 2016

STON: exploring biological pathways using the SBGN standard and graph databases.
BMC Bioinform., 2016

COMODI: an ontology to characterise differences in versions of computational models in biology.
J. Biomed. Semant., 2016

An algorithm to detect and communicate the differences in computational models describing biological systems.
Bioinform., 2016

Challenges and opportunities for system biology standards and tools in medical research.
Proceedings of the 7th Workshop on Ontologies and Data in Life Sciences, 2016

2015
Finding pattern in biochemical reaction networks - a sub-graph mining approach.
PeerJ Prepr., 2015

Specifications of Standards in Systems and Synthetic Biology.
J. Integr. Bioinform., 2015

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.
J. Integr. Bioinform., 2015

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2.
J. Integr. Bioinform., 2015

Annotation-based feature extraction from sets of SBML models.
J. Biomed. Semant., 2015

Combining computational models, semantic annotations and simulation experiments in a graph database.
Database J. Biol. Databases Curation, 2015

Extracting reproducible simulation studies from model repositories using the combinearchive toolkit.
Proceedings of the Datenbanksysteme für Business, Technologie und Web (BTW 2015), 2015

2014
Simulation Experiment Description Markup Language (SED-ML).
Proceedings of the Encyclopedia of Computational Neuroscience, 2014

COMBINE archive: One File To Share Them All.
CoRR, 2014

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
BMC Bioinform., 2014

The CombineArchiveWeb Application - A Web-based Tool to Handle Files Associated with Modelling Results.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

How Can Semantic Annotations Support the Identification of Network Similarities?
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

MaSyMoS: Finding Hidden Treasures in Model Repositories.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

Annotation-Based Feature Extraction from Sets of SBML Models.
Proceedings of the Data Integration in the Life Sciences - 10th International Conference, 2014

Information Retrieval in Life Sciences: A Programmatic Survey.
Proceedings of the Approaches in Integrative Bioinformatics - Towards the Virtual Cell, 2014

2013
Improving the reuse of computational models through version control.
Bioinform., 2013

2012
Considerations of graph-based concepts to manage of computational biology models and associated simulations.
Proceedings of the 57. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie, 42. Jahrestagung der Gesellschaft für Informatik, Was bewegt uns in der/die Zukunft?, 2012

2011
Minimum Information About a Simulation Experiment (MIASE).
PLoS Comput. Biol., 2011

Das Sombi-Framework zum Ermitteln geeigneter Suchfunktionen für biologische Modelldatenbasen.
Datenbank-Spektrum, 2011

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language.
BMC Syst. Biol., 2011

2010
Ranked retrieval of Computational Biology models.
BMC Bioinform., 2010


  Loading...