Dagmar Waltemath

According to our database1, Dagmar Waltemath authored at least 45 papers between 2010 and 2019.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Other 

Links

Homepages:

On csauthors.net:

Bibliography

2019
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.
J. Integrative Bioinformatics, 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
J. Integrative Bioinformatics, 2019

Harmonizing semantic annotations for computational models in biology.
Briefings in Bioinformatics, 2019

2018
Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation.
PLoS Computational Biology, 2018

Identifying frequent patterns in biochemical reaction networks - a workflow.
PeerJ PrePrints, 2018

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017.
J. Integrative Bioinformatics, 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core.
J. Integrative Bioinformatics, 2018

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 1 Core.
J. Integrative Bioinformatics, 2018

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3).
J. Integrative Bioinformatics, 2018

Evolution of computational models in BioModels Database and the Physiome Model Repository.
BMC Systems Biology, 2018

Identifying frequent patterns in biochemical reaction networks: a workflow.
Database, 2018

Notions of similarity for systems biology models.
Briefings in Bioinformatics, 2018

2017
Identifying frequent patterns in biochemical reaction networks - a workflow.
PeerJ PrePrints, 2017

The JWS online simulation database.
Bioinformatics, 2017

SED-ML web tools: generate, modify and export standard-compliant simulation studies.
Bioinformatics, 2017

Notions of similarity for systems biology models.
Briefings in Bioinformatics, 2017

A brief history of COMBINE.
Proceedings of the 2017 Winter Simulation Conference, 2017

2016
How Modeling Standards, Software, and Initiatives Support Reproducibility in Systems Biology and Systems Medicine.
IEEE Trans. Biomed. Engineering, 2016

Toward Community Standards and Software for Whole-Cell Modeling.
IEEE Trans. Biomed. Engineering, 2016

Finding patterns in biochemical reaction networks.
PeerJ PrePrints, 2016

Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2016.
J. Integrative Bioinformatics, 2016

STON: exploring biological pathways using the SBGN standard and graph databases.
BMC Bioinformatics, 2016

COMODI: an ontology to characterise differences in versions of computational models in biology.
J. Biomedical Semantics, 2016

An algorithm to detect and communicate the differences in computational models describing biological systems.
Bioinformatics, 2016

Challenges and opportunities for system biology standards and tools in medical research.
Proceedings of the 7th Workshop on Ontologies and Data in Life Sciences, 2016

2015
Finding pattern in biochemical reaction networks - a sub-graph mining approach.
PeerJ PrePrints, 2015

Specifications of Standards in Systems and Synthetic Biology.
J. Integrative Bioinformatics, 2015

Systems Biology Markup Language (SBML) Level 2 Version 5: Structures and Facilities for Model Definitions.
J. Integrative Bioinformatics, 2015

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2.
J. Integrative Bioinformatics, 2015

Annotation-based feature extraction from sets of SBML models.
J. Biomedical Semantics, 2015

Combining computational models, semantic annotations and simulation experiments in a graph database.
Database, 2015

Extracting reproducible simulation studies from model repositories using the combinearchive toolkit.
Proceedings of the Datenbanksysteme für Business, Technologie und Web (BTW 2015), 2015

2014
Simulation Experiment Description Markup Language (SED-ML).
Proceedings of the Encyclopedia of Computational Neuroscience, 2014

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
BMC Bioinformatics, 2014

The CombineArchiveWeb Application - A Web-based Tool to Handle Files Associated with Modelling Results.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

How Can Semantic Annotations Support the Identification of Network Similarities?
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

MaSyMoS: Finding Hidden Treasures in Model Repositories.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

Annotation-Based Feature Extraction from Sets of SBML Models.
Proceedings of the Data Integration in the Life Sciences - 10th International Conference, 2014

Information Retrieval in Life Sciences: A Programmatic Survey.
Proceedings of the Approaches in Integrative Bioinformatics - Towards the Virtual Cell, 2014

2013
Improving the reuse of computational models through version control.
Bioinformatics, 2013

2012
Considerations of graph-based concepts to manage of computational biology models and associated simulations.
Proceedings of the Informatik 2012, 2012

2011
Minimum Information About a Simulation Experiment (MIASE).
PLoS Computational Biology, 2011

Das Sombi-Framework zum Ermitteln geeigneter Suchfunktionen für biologische Modelldatenbasen.
Datenbank-Spektrum, 2011

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language.
BMC Systems Biology, 2011

2010
Ranked retrieval of Computational Biology models.
BMC Bioinformatics, 2010


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