Weijia Xu

According to our database, Weijia Xu authored at least 108 papers between 2003 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Stronger Inductive Biases for Sample-Efficient and Controllable Neural Machine Translation.

Weijia Xu

PhD thesis, 2023

GRIM: GRaph-based Interactive narrative visualization for gaMes.

Jorge Leandro, Sudha Rao, Michael Xu, Weijia Xu, Nebojsa Jojic, Chris Brockett, Bill Dolan

CoRR, 2023

Reprompting: Automated Chain-of-Thought Prompt Inference Through Gibbs Sampling.

Weijia Xu, Andrzej Banburski-Fahey, Nebojsa Jojic

CoRR, 2023

Understanding and Detecting Hallucinations in Neural Machine Translation via Model Introspection.

Weijia Xu, Sweta Agrawal, Eleftheria Briakou, Marianna J. Martindale, Marine Carpuat

CoRR, 2023

2022

Deep Neural Network Training With Distributed K-FAC.

J. Gregory Pauloski, Lei Huang, Weijia Xu, Kyle Chard, Ian T. Foster, Zhao Zhang

IEEE Trans. Parallel Distributed Syst., 2022

Synchronic Curation for Assessing Reuse and Integration Fitness of Multiple Data Collections.

Maria Esteva, Weijia Xu, Nevan Simone, Kartik Nagpal, Amit Gupta, Moriba K. Jah

Int. J. Digit. Curation, 2022

Research on multi factor stock selection model based on LightGBM and Bayesian Optimization.

Zimo Li, Weijia Xu, Aihua Li

Proceedings of the 9th International Conference on Information Technology and Quantitative Management, 2022

BatchLens: A Visualization Approach for Analyzing Batch Jobs in Cloud Systems.

Shaolun Ruan, Yong Wang, Hailong Jiang, Weijia Xu, Qiang Guan

Proceedings of the 2022 Design, Automation & Test in Europe Conference & Exhibition, 2022

Constrained Regeneration for Cross-Lingual Query-Focused Extractive Summarization.

Elsbeth Turcan, David Wan, Faisal Ladhak, Petra Galuscáková, Sukanta Sen, Svetlana Tchistiakova, Weijia Xu, Marine Carpuat, Kenneth Heafield, Douglas W. Oard, Kathleen R. McKeown

Proceedings of the 29th International Conference on Computational Linguistics, 2022

Accelerating Deep Learning Training Through Transparent Storage Tiering.

Marco Dantas, Diogo Leitão, Peter Cui, Ricardo Macedo, Xinlian Liu, Weijia Xu, João Paulo

Proceedings of the 22nd IEEE International Symposium on Cluster, 2022

2021

EDITOR: an Edit-Based Transformer with Repositioning for Neural Machine Translation with Soft Lexical Constraints.

Weijia Xu, Marine Carpuat

Trans. Assoc. Comput. Linguistics, 2021

Gramene 2021: harnessing the power of comparative genomics and pathways for plant research.

Marcela K. Tello-Ruiz, Sushma Naithani, Parul Gupta, Andrew Olson, Sharon Wei, Justin Preece, Yinping Jiao, Bo Wang, Kapeel Chougule, Priyanka Garg, Justin Elser, Sunita Kumari, Vivek Kumar, Bruno Contreras-Moreira, Guy Naamati, Nancy George, Justin Cook, Dan M. Bolser, Peter D'Eustachio, Lincoln D. Stein, Amit Gupta, Weijia Xu, Jennifer Regala, Irene Papatheodorou, Paul J. Kersey, Paul Flicek, Crispin Taylor, Pankaj Jaiswal, Doreen Ware

Nucleic Acids Res., 2021

Improved incremental local outlier detection for data streams based on the landmark window model.

Aihua Li, Weijia Xu, Zhidong Liu, Yong Shi

Knowl. Inf. Syst., 2021

Recognition and Co-Analysis of Pedestrian Activities in Different Parts of Road using Traffic Camera Video.

Weijia Xu, Heidi Ross, Joel Meyer, Kelly A. Pierce, Natalia Ruiz-Juri, Jennifer C. Duthie

CoRR, 2021

Soft Layer Selection with Meta-Learning for Zero-Shot Cross-Lingual Transfer.

Weijia Xu, Batool Haider, Jason Krone, Saab Mansour

CoRR, 2021

Research on Tourism Prosperity Index Based on the Power Big Data.

Aihua Li, Qiyuan Zhan, Weijia Xu, Yuejin Zhang

Proceedings of the WI-IAT '21: IEEE/WIC/ACM International Conference on Web Intelligence, Hybrid Event / Melbourne, VIC, Australia, December 14 - 17, 2021, 2021

The Impact of COVID-19 on China's Capital Market and Major Industry Sectors.

Weijia Xu, Aihua Li, Lu Wei

Proceedings of the 8th International Conference on Information Technology and Quantitative Management, 2021

Improving Multilingual Neural Machine Translation with Auxiliary Source Languages.

Weijia Xu, Yuwei Yin, Shuming Ma, Dongdong Zhang, Haoyang Huang

Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2021, 2021

Rule-based Morphological Inflection Improves Neural Terminology Translation.

Weijia Xu, Marine Carpuat

Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing, 2021

Lightning Talks of EduHPC 2021.

Henry A. Gabb, Alexandru Nicolau, Satish Puri, Michael D. Shah, Rahul Toppur, Neftali Watkinson, Weijia Xu, Hui Zhang

Proceedings of the 9th IEEE/ACM Workshop on Education for High Performance Computing, 2021

The Case for Storage Optimization Decoupling in Deep Learning Frameworks.

Ricardo Macedo, Cláudia Correia, Marco Dantas, Cláudia Brito, Weijia Xu, Yusuke Tanimura, Jason Haga, João Paulo

Proceedings of the IEEE International Conference on Cluster Computing, 2021

MONARCH: Hierarchical Storage Management for Deep Learning Frameworks.

Marco Dantas, Diogo Leitão, Cláudia Correia, Ricardo Macedo, Weijia Xu, João Paulo

Proceedings of the IEEE International Conference on Cluster Computing, 2021

Tracking Property Ownership Variance and Forecasting Housing Price with Machine Learning and Deep Learning.

Junfeng Jiao, Seung-Jun Choi, Weijia Xu

Proceedings of the 2021 IEEE International Conference on Big Data (Big Data), 2021

How Does Distilled Data Complexity Impact the Quality and Confidence of Non-Autoregressive Machine Translation?

Weijia Xu, Shuming Ma, Dongdong Zhang, Marine Carpuat

Proceedings of the Findings of the Association for Computational Linguistics: ACL/IJCNLP 2021, 2021

A Non-Autoregressive Edit-Based Approach to Controllable Text Simplification.

Sweta Agrawal, Weijia Xu, Marine Carpuat

Proceedings of the Findings of the Association for Computational Linguistics: ACL/IJCNLP 2021, 2021

2020

Building a PubMed knowledge graph.

Jian Xu, Sunkyu Kim, Min Song, Minbyul Jeong, Donghyeon Kim, Jaewoo Kang, Justin F. Rousseau, Xin Li, Weijia Xu, Vetle I. Torvik, Yi Bu, Chongyan Chen, Islam Akef Ebeid, Daifeng Li, Ying Ding

CoRR, 2020

Hierarchical Dirichlet Multinomial Allocation Model for Multi-Source Document Clustering.

Ruizhang Huang, Weijia Xu, Yongbin Qin, Yanping Chen

IEEE Access, 2020

A New Data Fusion Framework of Business Intelligence and Analytics in Economy, Finance and Management.

Aihua Li, Weijia Xu, Yong Shi

Proceedings of the IEEE/WIC/ACM International Joint Conference on Web Intelligence and Intelligent Agent Technology, 2020

Convolutional neural network training with distributed K-FAC.

J. Gregory Pauloski, Zhao Zhang, Lei Huang, Weijia Xu, Ian T. Foster

Proceedings of the International Conference for High Performance Computing, 2020

Modeling Data Curation to Scientific Inquiry: A Case Study for Multimodal Data Integration.

Maria Esteva, Weijia Xu, Nevan Simone, Amit Gupta, Moriba K. Jah

Proceedings of the JCDL '20: Proceedings of the ACM/IEEE Joint Conference on Digital Libraries in 2020, 2020

Dual Reconstruction: a Unifying Objective for Semi-Supervised Neural Machine Translation.

Weijia Xu, Xing Niu, Marine Carpuat

Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2020, 2020

End-to-End Slot Alignment and Recognition for Cross-Lingual NLU.

Weijia Xu, Batool Haider, Saab Mansour

Proceedings of the 2020 Conference on Empirical Methods in Natural Language Processing, 2020

AI4AV (Artificial Intelligence for Audiovisual): Design and Evaluation of a Shared System for LAMs.

Maria Esteva, Tanya E. Clement, Weijia Xu, Aaron Choate, Hannah Robbins Hopkins

Proceedings of the 15th Annual International Conference of the Alliance of Digital Humanities Organizations, 2020

A Study of Spoken Audio Processing using Machine Learning for Libraries, Archives and Museums (LAM).

Weijia Xu, Maria Esteva, Peter Cui, Eugene Castillo, Kewen Wang, Hanna Robbins Hopkins, Tanya E. Clement, Aaron Choate, Ruizhu Huang

Proceedings of the 2020 IEEE International Conference on Big Data (IEEE BigData 2020), 2020

2019

Improving Publication Pipeline with Automated Biological Entity Detection and Validation Service.

Weijia Xu, Amit Gupta, Pankaj Jaiswal, Crispin Taylor, Patti Lockhart, Jennifer Regala

Data Inf. Manag., 2019

Special Issue on Cyberinfrastructure, Machine Learning, and Digital Library.

Weijia Xu, Maria Esteva, Jessica Trelogan, Dan Wu

Data Inf. Manag., 2019

Identifier Services: Modeling and Implementing Distributed Data Management in Cyberinfrastructure.

Maria Esteva, Ramona L. Walls, Andrew B. Magill, Weijia Xu, Ruizhu Huang, James D. Carson, Jawon Song

Data Inf. Manag., 2019

HPC AI500: A Benchmark Suite for HPC AI Systems.

Zihan Jiang, Wanling Gao, Lei Wang, Xingwang Xiong, Yuchen Zhang, Xu Wen, Chunjie Luo, Hainan Ye, Yunquan Zhang, Shengzhong Feng, Kenli Li, Weijia Xu, Jianfeng Zhan

CoRR, 2019

Extracting Domain Information using Deep Learning.

Amit Gupta, Weijia Xu, Pankaj Jaiswal, Crispin Taylor, Jennifer Regala

Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning), 2019

Adjusting the Inheritance of Topic for Dynamic Document Clustering.

Ruizhang Huang, Yingxue Zhu, Yanping Chen, Yue Yang, Weijia Xu, Jian Yang, Yaru Meng

Proceedings of the Theoretical Computer Science - 37th National Conference, 2019

Differentiable Sampling with Flexible Reference Word Order for Neural Machine Translation.

Weijia Xu, Xing Niu, Marine Carpuat

Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2019

Bi-Directional Differentiable Input Reconstruction for Low-Resource Neural Machine Translation.

Xing Niu, Weijia Xu, Marine Carpuat

Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2019

Surprise Languages: Rapid-Response Cross-Language IR.

Douglas W. Oard, Marine Carpuat, Petra Galuscáková, Joseph Barrow, Suraj Nair, Xing Niu, Han-Chin Shing, Weijia Xu, Elena Zotkina, Kathleen R. McKeown, Smaranda Muresan, Efsun Selin Kayi, Ramy Eskander, Chris Kedzie, Yan Virin, Dragomir R. Radev, Rui Zhang, Mark J. F. Gales, Anton Ragni, Kenneth Heafield

Proceedings of the 9th International Workshop on Evaluating Information Access co-located with the 14th NTCIR Conference on the Evaluation of Information Access Technologies (NTCIR 2019), 2019

Quantifying the Impact of Memory Errors in Deep Learning.

Zhao Zhang, Lei Huang, Ruizhu Huang, Weijia Xu, Daniel S. Katz

Proceedings of the 2019 IEEE International Conference on Cluster Computing, 2019

Detecting Pedestrian Crossing Events in Large Video Data from Traffic Monitoring Cameras.

Weijia Xu, Natalia Ruiz-Juri, Kelly A. Pierce, Ruizhu Huang, Joel Meyer, Jen Duthie

Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019

Performance Comparison of Julia Distributed Implementations of Dirichlet Process Mixture Models.

Ruizhu Huang, Weijia Xu, Yinzhi Wang, Silvia Liverani, Ann E. Stapleton

Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019

2018

Authentication with User Driven Web Application for Accessing Remote Resources.

Yige Wang, Ruizhu Huang, Weijia Xu

Proceedings of the Practice and Experience on Advanced Research Computing, 2018

A Case Study of R Performance Analysis and Optimization.

Ruizhu Huang, Weijia Xu, Silvia Liverani, Dave Hiltbrand, Ann E. Stapleton

Proceedings of the Practice and Experience on Advanced Research Computing, 2018

Building Big Data Processing and Visualization Pipeline through Apache Zeppelin.

Yanzhe Cheng, Fang (Cherry) Liu, Shan Jing, Weijia Xu, Duen Horng Chau

Proceedings of the Practice and Experience on Advanced Research Computing, 2018

The University of Maryland's Chinese-English Neural Machine Translation Systems at WMT18.

Weijia Xu, Marine Carpuat

Proceedings of the Third Conference on Machine Translation: Shared Task Papers, 2018

Enabling User Driven Web Applications on Remote Computing Resource.

Weijia Xu, Ruizhu Huang, Yige Wang

Proceedings of the 2018 IEEE World Congress on Services, 2018

Cyberinfrastructure for Digital Libraries and Archives: Integrating Data Management, Analysis, and Publication.

Weijia Xu, Maria Esteva, Jessica Trelogan

Proceedings of the 18th ACM/IEEE on Joint Conference on Digital Libraries, 2018

Domain Informational Vocabulary Extraction Experiences with Publication Pipeline Integration and Ontology Curation.

Amit Gupta, Weijia Xu, Pankaj Jaiswal, Crispin Taylor, Jennifer Regala

Proceedings of the 9th International Conference on Biological Ontology (ICBO 2018), 2018

Enabling User Driven Big Data Application on Remote Computing Resources.

Weijia Xu, Ruizhu Huang, Yige Wang

Proceedings of the IEEE International Conference on Big Data (IEEE BigData 2018), 2018

Integrated HPC Scheduler Data Processing Workflow using Apache Zeppelin.

Fang (Cherry) Liu, Yuanjie Sun, Adele Yunlan Sun, Weijia Xu

Proceedings of the IEEE International Conference on Big Data (IEEE BigData 2018), 2018

HPC AI500: A Benchmark Suite for HPC AI Systems.

Zihan Jiang, Wanling Gao, Lei Wang, Xingwang Xiong, Yuchen Zhang, Xu Wen, Chunjie Luo, Hainan Ye, Xiaoyi Lu, Yunquan Zhang, Shengzhong Feng, Kenli Li, Weijia Xu, Jianfeng Zhan

Proceedings of the Benchmarking, Measuring, and Optimizing, 2018

2017

Insights into Research Computing Operations using Big Data-Powered Log Analysis.

Fang (Cherry) Liu, Weijia Xu, Mehmet Belgin, Ruizhu Huang, Blake C. Fleischer

Proceedings of the Practice and Experience in Advanced Research Computing 2017: Sustainability, 2017

A Portable Strategy for Preserving Web Applications Functionality.

Weijia Xu, Maria Esteva, Deborah Beck, Yi-Hsuan Hsieh

Proceedings of the 2017 ACM/IEEE Joint Conference on Digital Libraries, 2017

Big data system for information aggregation and model comparison for precison medicine.

Ziwei Zhu, Weijia Xu, Wei He

Proceedings of the 2017 IEEE International Conference on Big Data (IEEE BigData 2017), 2017

Enabling versatile analysis of large scale traffic video data with deep learning and HiveQL.

Lei Huang, Weijia Xu, Si Liu, Venktesh Pandey, Natalia Ruiz-Juri

Proceedings of the 2017 IEEE International Conference on Big Data (IEEE BigData 2017), 2017

2016

A web interface for XALT log data analysis.

Ruizhu Huang, Weijia Xu, Robert T. McLay

Proceedings of the XSEDE16 Conference on Diversity, 2016

Data Curation with a Focus on Reuse.

Maria Esteva, Sandra Sweat, Robert T. McLay, Weijia Xu, Sivakumar Kulasekaran

Proceedings of the 16th ACM/IEEE-CS on Joint Conference on Digital Libraries, 2016

A Web Application for Extracting Key Domain Information for Scientific Publications Using Ontology.

Weijia Xu, Amit Gupta, Pankaj Jaiswal, Crispin Taylor, Patti Lockhart

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Enhancing Information Accessibility of Publications with Text Mining and Ontology.

Weijia Xu, Amit Gupta, Pankaj Jaiswal, Crispin Taylor, Patti Lockhart

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Computation-Aided Analysis on Film Credits.

Li Yang, Weijia Xu

Proceedings of the 11th Annual International Conference of the Alliance of Digital Humanities Organizations, 2016

Supporting large scale connected vehicle data analysis using HIVE.

Weijia Xu, Natalia Ruiz-Juri, Amit Gupta, Amanda Deering, Chandra R. Bhat, James Kuhr, Jackson Archer

Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016

Content-based comparison for collections identification.

Weijia Xu, Ruizhu Huang, Maria Esteva, Jawon Song, Ramona L. Walls

Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016

A workload aware model of computational resource selection for big data applications.

Amit Gupta, Weijia Xu, Natalia Ruiz-Juri, Kenneth Perrine

Proceedings of the 2016 IEEE International Conference on Big Data (IEEE BigData 2016), 2016

2015

FlowGate: towards extensible and scalable web-based flow cytometry data analysis.

Yu Qian, Hyunsoo Kim, Shweta Purawat, Jianwu Wang, Rick Stanton, Alexandra Lee, Weijia Xu, Ilkay Altintas, Robert S. Sinkovits, Richard H. Scheuermann

Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure, St. Louis, MO, USA, July 26, 2015

Multi-Column Query Method Research and Optimization on HBase.

Bo Shen, Han-Chieh Chao, Weijia Xu

Proceedings of the Knowledge Management in Organizations - 10th International Conference, 2015

Wrangler's user environment: A software framework for management of data-intensive computing system.

Christopher Jordan, David Walling, Weijia Xu, Stephen A. Mock, Niall Gaffney, Dan Stanzione

Proceedings of the 2015 IEEE International Conference on Big Data (IEEE BigData 2015), Santa Clara, CA, USA, October 29, 2015

Performance evaluation of enabling logistic regression for big data with R.

Ruizhu Huang, Weijia Xu

Proceedings of the 2015 IEEE International Conference on Big Data (IEEE BigData 2015), Santa Clara, CA, USA, October 29, 2015

Supporting Data Driven Access through Automatic Keyword Extraction and Summarization.

Weijia Xu, Wei Luo, Nicholas Woodward, Yan Zhang

Proceedings of the 2015 IEEE International Congress on Big Data, New York City, NY, USA, June 27, 2015

2014

Interactive visualization for curatorial analysis of large digital collection.

Weijia Xu, Maria Esteva, Suyog Dott Jain, Varun Jain

Inf. Vis., 2014

The Adaptive Projection Forest: Using adjustable exclusion and parallelism in metric space indexes.

Lee Parnell Thompson, Weijia Xu, Daniel P. Miranker

Proceedings of the 2014 IEEE International Conference on Big Data (IEEE BigData 2014), 2014

On scaling time dependent shortest path computations for Dynamic Traffic Assignment.

Amit Gupta, Weijia Xu, Kenneth Perrine, Dennis Bell, Natalia Ruiz-Juri

Proceedings of the 2014 IEEE International Conference on Big Data (IEEE BigData 2014), 2014

2013

Two accurate sequence, structure, and phylogenetic template-based RNA alignment systems.

Lei Shang, David P. Gardner, Weijia Xu, Jamie J. Cannone, Daniel P. Miranker, Stuart Ozer, Robin Ray Gutell

BMC Syst. Biol., 2013

Lost in the Data, Aerial Views of an Archaeological Collection.

Maria Esteva, Jessica Trelogan, Weijia Xu, Andrew J. Solis, Nicholas E. Lauland

Proceedings of the 8th Annual International Conference of the Alliance of Digital Humanities Organizations, 2013

A case study on entity Resolution for Distant Processing of big Humanities data.

Weijia Xu, Maria Esteva, Jessica Trelogan, Todd Swinson

Proceedings of the 2013 IEEE International Conference on Big Data (IEEE BigData 2013), 2013

Fast scalable selection algorithms for large scale data.

Lee Parnell Thompson, Weijia Xu, Daniel P. Miranker

Proceedings of the 2013 IEEE International Conference on Big Data (IEEE BigData 2013), 2013

Performance evaluation of R with Intel Xeon Phi coprocessor.

Yaakoub El Khamra, Niall Gaffney, David Walling, Eric A. Wernert, Weijia Xu, Hui Zhang

Proceedings of the 2013 IEEE International Conference on Big Data (IEEE BigData 2013), 2013

Data mining for "big archives" analysis: A case study.

Maria Esteva, Jeffrey Felix Tang, Weijia Xu, Karthik Anantha Padmanabhan

Proceedings of the Beyond the Cloud: Rethinking Information Boundaries, 2013

2012

On automatically tagging web documents from examples.

Nicholas Joel Woodward, Weijia Xu, Kent Norsworthy

Proceedings of the 35th International ACM SIGIR conference on research and development in Information Retrieval, 2012

Analysis and Optimization of Data Import with Hadoop.

Weijia Xu, Wei Luo, Nicholas Woodward

Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012

An accurate scalable template-based alignment algorithm.

David P. Gardner, Weijia Xu, Daniel P. Miranker, Stuart Ozer, Jamie J. Cannone, Robin Ray Gutell

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Designing an Interface for Exploring Online Autism Support Communities.

Bretagne Abirached, Wei Luo, Weijia Xu, Yan Zhang

Proceedings of the AMIA 2012, 2012

2011

Finding stories in the archive through paragraph alignment.

Weijia Xu, Maria Esteva

Lit. Linguistic Comput., 2011

Assessing the Preservation Condition of Large and Heterogeneous Electronic Records Collections with Visualization.

Maria Esteva, Weijia Xu, Suyog Dott Jain, Jennifer L. Lee, Wendy K. Martin

Int. J. Digit. Curation, 2011

Integrating multi-touch in high-resolution display environments.

Brandt M. Westing, Benjamin Urick, Maria Esteva, Freddy Rojas, Weijia Xu

Proceedings of the Conference on High Performance Computing Networking, Storage and Analysis, 2011

Analysis of large digital collections with interactive visualization.

Weijia Xu, Maria Esteva, Suyog Dott Jain, Varun Jain

Proceedings of the 6th IEEE Conference on Visual Analytics Science and Technology, 2011

Facilitating Understanding of Large Document Collections.

Jae Hyeon Bae, Weijia Xu, Maria Esteva

Proceedings of the 2011 International Conference on Document Analysis and Recognition, 2011

rCAD: A Novel Database Schema for the Comparative Analysis of RNA.

Stuart Ozer, Kishore J. Doshi, Weijia Xu, Robin Ray Gutell

Proceedings of the IEEE 7th International Conference on E-Science, 2011

RNA2DMap: A Visual Exploration Tool of the Information in RNA's Higher-Order Structure.

Weijia Xu, Ame Wongsa, Jung Lee, Lei Shang, Jamie J. Cannone, Robin Ray Gutell

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

R-PASS: A Fast Structure-Based RNA Sequence Alignment Algorithm.

Yanan Jiang, Weijia Xu, Lee Parnell Thompson, Robin Ray Gutell, Daniel P. Miranker

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010

Visualizing personal digital collections.

Weijia Xu, Maria Esteva, Suyog Dott Jain

Proceedings of the 2010 Joint International Conference on Digital Libraries, 2010

Distributed, Scalable Clustering for Detecting Halos in Terascale Astronomy Datasets.

Srivatsava Daruru, Sankari Dhandapani, Gunjan Gupta, Ilian Iliev, Weijia Xu, Paul A. Navrátil, Nena M. Marin, Joydeep Ghosh

Proceedings of the ICDMW 2010, 2010

2009

Visual Representation of Multiple Associations in Data using Constrained Graph Layout.

Weijia Xu, Jaya Sreevalsan-Nair

Proceedings of the EG UK Theory and Practice of Computer Graphics, 2009

Covariant Evolutionary Event Analysis for Base Interaction Prediction Using a Relational Database Management System for RNA.

Weijia Xu, Stuart Ozer, Robin Ray Gutell

Proceedings of the Scientific and Statistical Database Management, 2009

Composing and executing parallel data-flow graphs with shell pipes.

Edward Walker, Weijia Xu, Vinoth Chandar

Proceedings of the 4th Workshop on Workflows in Support of Large-Scale Science, 2009

2008

Anytime k-nearest neighbor search for database applications.

Weijia Xu, Daniel P. Miranker, Rui Mao, Smriti R. Ramakrishnan

Proceedings of the 24th International Conference on Data Engineering Workshops, 2008

2006

A fast coarse filtering method for peptide identification by mass spectrometry.

Smriti R. Ramakrishnan, Rui Mao, Aleksey A. Nakorchevskiy, John T. Prince, Willard S. Willard, Weijia Xu, Edward M. Marcotte, Daniel P. Miranker

Bioinform., 2006

On Integrating Peptide Sequence Analysis and Relational Distance-Based Indexing.

Weijia Xu, Rui Mao, Shu Wang, Daniel P. Miranker

Proceedings of the Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 2006

2005

An Assessment of a Metric Space Database Index to Support Sequence Homology.

Rui Mao, Weijia Xu, Neha Singh, Daniel P. Miranker

Int. J. Artif. Intell. Tools, 2005

On Optimizing Distance-Based Similarity Search for Biological Databases.

Rui Mao, Weijia Xu, Smriti R. Ramakrishnan, Glen Nuckolls, Daniel P. Miranker

Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference, 2005

2004

Biosequence Use Cases in MoBIoS SQL.

Daniel P. Miranker, Willard J. Briggs, Rui Mao, Shulin Ni, Weijia Xu

IEEE Data Eng. Bull., 2004

A metric model of amino acid substitution.

Weijia Xu, Daniel P. Miranker

Bioinform., 2004

Using MoBIoS' scalable genome join to find conserved primer pair candidates between two genomes.

Weijia Xu, Willard J. Briggs, Joanna Padolina, Ruth E. Timme, Wenguo Liu, C. Randal Linder, Daniel P. Miranker

Proceedings of the Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology 2004, 2004

2003

MoBIoS: A Metric-Space DBMS to Support Biological Discovery.

Daniel P. Miranker, Weijia Xu, Rui Mao

Proceedings of the 15th International Conference on Scientific and Statistical Database Management (SSDBM 2003), 2003