Yi Zhao

According to our database, Yi Zhao authored at least 40 papers between 2005 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Enzyme Repertoires and Genomic Insights into <i>Lycium barbarum</i> Pectin Polysaccharide Biosynthesis.

Haiyan Yue, Yiheng Tang, Aixuan Li, Lili Zhang, Yiwei Niu, Yiming Zhang, Hao Wang, Jianjun Luo, Yi Zhao, Shunmin He, Chang Chen, Runsheng Chen

Genom. Proteom. Bioinform., 2025

CIEC: Cross-tissue Immune Cell Type Enrichment and Expression Map Visualization for Cancer.

Jinhua He, Haitao Luo, Wei Wang, Dechao Bu, Zhengkai Zou, Haolin Wang, Hongzhen Tang, Zeping Han, Wenfeng Luo, Jian Shen, Fangmei Xie, Yi Zhao, Zhiming Xiang

Genom. Proteom. Bioinform., 2025

2024

Predicting transcriptional responses to novel chemical perturbations using deep generative model for drug discovery.

Xiaoning Qi, Lianhe Zhao, Yi Zhao

Dataset, November, 2024

Predicting transcriptional responses to novel chemical perturbations using deep generative model for drug discovery.

Xiaoning Qi, Lianhe Zhao, Yi Zhao

Dataset, October, 2024

MiHATP:A Multi-hybrid Attention Super-Resolution Network for Pathological Image Based on Transformation Pool Contrastive Learning.

Zhufeng Xu, Jiaxin Qin, Chenhao Li, Dechao Bu, Yi Zhao

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

2023

Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network.

Lianhe Zhao, Xiaoning Qi, Yang Chen, Yixuan Qiao, Dechao Bu, Yang Wu, Yufan Luo, Sheng Wang, Rui Zhang, Yi Zhao

Briefings Bioinform., March, 2023

NPInter v5.0: ncRNA interaction database in a new era.

Yu Zheng, Huaxia Luo, XueYi Teng, Xinpei Hao, Xiaoyu Yan, Yiheng Tang, Wanyu Zhang, Yuanxin Wang, Peng Zhang, Yanyan Li, Yi Zhao, Runsheng Chen, Shunmin He

Nucleic Acids Res., January, 2023

2022

piRBase: integrating piRNA annotation in all aspects.

Jiajia Wang, Yirong Shi, Honghong Zhou, Peng Zhang, Tingrui Song, Zhiye Ying, Haopeng Yu, Yanyan Li, Yi Zhao, Xiaoxi Zeng, Shunmin He, Runsheng Chen

Nucleic Acids Res., 2022

dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms.

Feng Xu, Yifan Wang, Yunchao Ling, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yi Zhao, Haitao Zhao, Yungang He, Guoqing Zhang, Zhen Yang

Genom. Proteom. Bioinform., 2022

Multi-modality artificial intelligence in digital pathology.

Yixuan Qiao, Lianhe Zhao, Chunlong Luo, Yufan Luo, Yang Wu, Shengtong Li, Dechao Bu, Yi Zhao

Briefings Bioinform., 2022

2021

NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants.

Lianhe Zhao, Jiajia Wang, Yanyan Li, Tingrui Song, Yang Wu, Shuangsang Fang, Dechao Bu, Hui Li, Liang Sun, Dong Pei, Yu Zheng, Jianqin Huang, Mingqing Xu, Runsheng Chen, Yi Zhao, Shunmin He

Nucleic Acids Res., 2021

ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs.

Yuwei Zhang, Dechao Bu, Peipei Huo, Zhihao Wang, Hao Rong, Yanguo Li, Jingjia Liu, Meng Ye, Yang Wu, Zheng Jiang, Qi Liao, Yi Zhao

Nucleic Acids Res., 2021

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021.

Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Zheng Gong, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Tao Zhang, Wang Kang, Fei Yang, Jing Qu, Weiqi Zhang, Guanghui Liu, Lin Liu, Yang Zhang, Guangyi Niu, Tongtong Zhu, Changrui Feng, Xiaonan Liu, Yuansheng Zhang, Zhao Li, Ruru Chen, Qianpeng Li, Zhongyi Hua, Chao Jiang, Ziyuan Chen, Fangshu He, Yuyang Zhao, Yan Jin, Luqi Huang, Yuan Yuan, Chenfen Zhou, Qingwei Xu, Sheng He, Wei Ye, Ruifang Cao, Pengyu Wang, Yunchao Ling, Xing Yan, Qingzhong Wang, Qiang Du, Wenting Zong, Hongen Kang, Zhuang Xiong, Wendi Huan, Sirui Zhang, Qiguang Xia, Xiaojuan Fan, Zefeng Wang, Xu Chen, Tingting Chen, Sisi Zhang, Bixia Tang, Lili Dong, Zhewen Zhang, Zhonghuang Wang, Hailong Kang, Yanqing Wang, Song Wu, Ming Chen, Chang Liu, Yujia Xiong, Xueying Shao, Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, Lili Zhang, Huaxia Luo, Yajing Hao, Peng Zhang, Zhi Nie, Shuhuan Yu, Jian Sang, Zhaohua Li, Xiangquan Zhang, Qing Zhou, Shuang Zhai, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Jun Yan, Chen Li, Zhennan Wang, Xiangfeng Wang, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Hai-Chun Jing, Lianhe Zhao, Jiajia Wang, Tinrui Song, Yi Zhao, Furrukh Mehmood, Shahid Ali, Amjad Ali, Shoaib Saleem, Irfan Hussain, Amir Ali Abbasi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Yiran Tu, Yu Xue, Wanying Wu, Peifeng Ji, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Wanshan Ning, Shaofeng Lin, Teng Liu, An-Yuan Guo, Hao Yuan, Yong E. Zhang, Xiaodan Tan, Weizhi Zhang, Yubin Xie, Chenwei Wang, Chun-Jie Liu, De-Chang Yang, Feng Tian, Ge Gao, Dachao Tang, Lan Yao, Qinghua Cui, Ni A. An, Chuan-Yun Li, Xiaotong Luo

Nucleic Acids Res., 2021

HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine.

Shuangsang Fang, Lei Dong, Liu Liu, Jincheng Guo, Lianhe Zhao, Jiayuan Zhang, Dechao Bu, Xinkui Liu, Peipei Huo, Wanchen Cao, Qiongye Dong, Jiarui Wu, Xiaoxi Zeng, Yang Wu, Yi Zhao

Nucleic Acids Res., 2021

KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis.

Dechao Bu, Haitao Luo, Peipei Huo, Zhihao Wang, Shan Zhang, Zihao He, Yang Wu, Lianhe Zhao, Jingjia Liu, Jincheng Guo, Shuangsang Fang, Wanchen Cao, Lan Yi, Yi Zhao, Lei Kong

Nucleic Acids Res., 2021

Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity.

Haitao Luo, Dechao Bu, Lijuan Shao, Yang Li, Liang Sun, Ce Wang, Jing Wang, Wei Yang, Xiaofei Yang, Jun Dong, Yi Zhao, Furong Li

Genom. Proteom. Bioinform., 2021

2020

NPInter v4.0: an integrated database of ncRNA interactions.

XueYi Teng, Xiaomin Chen, Hua Xue, Yiheng Tang, Peng Zhang, Quan Kang, Yajing Hao, Runsheng Chen, Yi Zhao, Shunmin He

Nucleic Acids Res., 2020

LSD 3.0: a comprehensive resource for the leaf senescence research community.

Zhonghai Li, Yang Zhang, Dong Zou, Yi Zhao, Hou-Ling Wang, Yi Zhang, Xinli Xia, Jingchu Luo, Hongwei Guo, Zhang Zhang

Nucleic Acids Res., 2020

PBRnet: Pyramidal Bounding Box Refinement to Improve Object Localization Accuracy.

Li Xiao, Yufan Luo, Chunlong Luo, Lianhe Zhao, Quanshui Fu, Guoqing Yang, Anpeng Huang, Yi Zhao

CoRR, 2020

2019

SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping.

Yang Wu, Feilong Zhang, Kuo Yang, Shuangsang Fang, Dechao Bu, Hui Li, Liang Sun, Hairuo Hu, Kuo Gao, Wei Wang, Xuezhong Zhou, Yi Zhao, Jianxin Chen

Nucleic Acids Res., 2019

CNIT: a fast and accurate web tool for identifying protein-coding and long non-coding transcripts based on intrinsic sequence composition.

Jincheng Guo, Shuangsang Fang, Yang Wu, Jianhua Zhang, Yang Chen, Jing Liu, Bo Wu, Jiarui Wu, Enmin Li, Liyan Xu, Liang Sun, Yi Zhao

Nucleic Acids Res., 2019

Learning from Suspected Target: Bootstrapping Performance for Breast Cancer Detection in Mammography.

Li Xiao, Cheng Zhu, Junjun Liu, Chunlong Luo, Peifang Liu, Yi Zhao

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

DeepACE: Automated Chromosome Enumeration in Metaphase Cell Images Using Deep Convolutional Neural Networks.

Li Xiao, Chunlong Luo, Yufan Luo, Tianqi Yu, Chan Tian, Jie Qiao, Yi Zhao

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

2018

NONCODEV5: a comprehensive annotation database for long non-coding RNAs.

Shuangsang Fang, LiLi Zhang, Jincheng Guo, Yiwei Niu, Yang Wu, Hui Li, Lianhe Zhao, Xiyuan Li, XueYi Teng, XianHui Sun, Liang Sun, Michael Q. Zhang, Runsheng Chen, Yi Zhao

Nucleic Acids Res., 2018

2017

dbDEMC 2.0: updated database of differentially expressed miRNAs in human cancers.

Zhen Yang, Liangcai Wu, Anqiang Wang, Wei Tang, Yi Zhao, Haitao Zhao, Andrew E. Teschendorff

Nucleic Acids Res., 2017

Identification and function annotation of long intervening noncoding RNAs.

Haitao Luo, Dechao Bu, Liang Sun, Shuangsang Fang, Zhiyong Liu, Yi Zhao

Briefings Bioinform., 2017

2016

NONCODE 2016: an informative and valuable data source of long non-coding RNAs.

Yi Zhao, Hui Li, Shuangsang Fang, Yue Kang, Wei Wu, Yajing Hao, Ziyang Li, Dechao Bu, Ninghui Sun, Michael Q. Zhang, Runsheng Chen

Nucleic Acids Res., 2016

NPInter v3.0: an upgraded database of noncoding RNA-associated interactions.

Yajing Hao, Wei Wu, Hui Li, Jiao Yuan, Jianjun Luo, Yi Zhao, Runsheng Chen

Database J. Biol. Databases Curation, 2016

2015

Dr.VIS v2.0: an updated database of human disease-related viral integration sites in the era of high-throughput deep sequencing.

Xiaobo Yang, Ming Li, Qi Liu, Yabing Zhang, Junyan Qian, Xueshuai Wan, Anqiang Wang, Haohai Zhang, Chengpei Zhu, Xin Lu, Yilei Mao, Xinting Sang, Haitao Zhao, Yi Zhao, Xiaoyan Zhang

Nucleic Acids Res., 2015

2014

NPInter v2.0: an updated database of ncRNA interactions.

Jiao Yuan, Wei Wu, Chaoyong Xie, Guoguang Zhao, Yi Zhao, Runsheng Chen

Nucleic Acids Res., 2014

NONCODEv4: exploring the world of long non-coding RNA genes.

Chaoyong Xie, Jiao Yuan, Hui Li, Ming Li, Guoguang Zhao, Dechao Bu, Weimin Zhu, Wei Wu, Runsheng Chen, Yi Zhao

Nucleic Acids Res., 2014

2012

NONCODE v3.0: integrative annotation of long noncoding RNAs.

Dechao Bu, Kuntao Yu, Silong Sun, Chaoyong Xie, Geir Skogerbø, Ruoyu Miao, Hui Xiao, Qi Liao, Haitao Luo, Guoguang Zhao, Haitao Zhao, Zhiyong Liu, Changning Liu, Runsheng Chen, Yi Zhao

Nucleic Acids Res., 2012

2011

ncFANs: a web server for functional annotation of long non-coding RNAs.

Qi Liao, Hui Xiao, Dechao Bu, Chaoyong Xie, Ruoyu Miao, Haitao Luo, Guoguang Zhao, Kuntao Yu, Haitao Zhao, Geir Skogerbø, Runsheng Chen, Zhongdao Wu, Changning Liu, Yi Zhao

Nucleic Acids Res., 2011

2009

Clustered microRNAs' coordination in regulating protein-protein interaction network.

Xiongying Yuan, Changning Liu, Pengcheng Yang, Shunmin He, Qi Liao, Shuli Kang, Yi Zhao

BMC Syst. Biol., 2009

2008

NONCODE v2.0: decoding the non-coding.

Shunmin He, Changning Liu, Geir Skogerbø, Haitao Zhao, Jie Wang, Tao Liu, Baoyan Bai, Yi Zhao, Runsheng Chen

Nucleic Acids Res., 2008

2007

antiCODE: a natural sense-antisense transcripts database.

Yifei Yin, Yi Zhao, Jie Wang, Changning Liu, Shuguang Chen, Runsheng Chen, Haitao Zhao

BMC Bioinform., 2007

United-FS: A Logical File System Providing a Single Image of Multiple Physical File Systems on NFS Server.

Huan Chen, Yi Zhao, Jin Xiong, Jie Ma, Ninghui Sun

Proceedings of the 21th International Parallel and Distributed Processing Symposium (IPDPS 2007), 2007

2006

NPInter: the noncoding RNAs and protein related biomacromolecules interaction database.

Tao Wu, Jie Wang, Changning Liu, Yong Zhang, Baochen Shi, Xiaopeng Zhu, Zhihua Zhang, Geir Skogerbø, Lan Chen, Hongchao Lu, Yi Zhao, Runsheng Chen

Nucleic Acids Res., 2006

Research on Key Technologies of Load Balancing for NFS Server with Multiple Network Paths.

Huan Chen, Rongfeng Tang, Yi Zhao, Jin Xiong, Jie Ma, Ninghui Sun

Proceedings of the Grid and Cooperative Computing Workshops, 2006

2005

NONCODE: an integrated knowledge database of non-coding RNAs.

Changning Liu, Baoyan Bai, Geir Skogerbø, Lun Cai, Wei Deng, Yong Zhang, Dongbo Bu, Yi Zhao, Runsheng Chen

Nucleic Acids Res., 2005