Yuki Naito

According to our database, Yuki Naito authored at least 14 papers between 2003 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Localizatome: a database for stress-dependent subcellular localization changes in proteins.

Takahide Matsushima, Yuki Naito, Tomoki Chiba, Ryota Kurimoto, Keiko Itano, Koji Ochiai, Koichi Takahashi, Naoki Goshima, Hiroshi Asahara

Database J. Biol. Databases Curation, 2025

2023

Quantum Query Lower Bounds for Key Recovery Attacks on the Even-Mansour Cipher.

Akinori Kawachi, Yuki Naito

Proceedings of the Computing and Combinatorics - 29th International Conference, 2023

2022

TogoID: an exploratory ID converter to bridge biological datasets.

Shuya Ikeda, Hiromasa Ono, Tazro Ohta, Hirokazu Chiba, Yuki Naito, Yuki Moriya, Shuichi Kawashima, Yasunori Yamamoto, Shinobu Okamoto, Susumu Goto, Toshiaki Katayama

Bioinform., 2022

2021

Bowel sound-based features to investigate the effect of coffee and soda on gastrointestinal motility.

Kensuke Horiyama, Takahiro Emoto, Takeyuki Haraguchi, Takashi Uebanso, Yuki Naito, Takuma Gyobu, Kenta Kanemoto, Junichi Inobe, Ayumi Sano, Masatake Akutagawa, Akira Takahashi

Biomed. Signal Process. Control., 2021

2020

BioHackathon 2015: Semantics of data for life sciences and reproducible research.

Rutger A. Vos, Toshiaki Katayama, Hiroyuki Mishima, Shin Kawano, Shuichi Kawashima, Jin-Dong Kim, Yuki Moriya, Toshiaki Tokimatsu, Atsuko Yamaguchi, Yasunori Yamamoto, Hongyan Wu, Peter Amstutz, Erick Antezana, Nobuyuki P. Aoki, Kazuharu Arakawa, Jerven T. Bolleman, Evan E. Bolton, Raoul Jean Pierre Bonnal, Hidemasa Bono, Kees Burger, Hirokazu Chiba, Kevin Bretonnel Cohen, Eric W. Deutsch, Jesualdo Tomás Fernández-Breis, Gang Fu, Takatomo Fujisawa, Atsushi Fukushima, Alexander García Castro, Naohisa Goto, Tudor Groza, Colin Hercus, Robert Hoehndorf, Kotone Itaya, Nick S. Juty, Takeshi Kawashima, Jee-Hyub Kim, Akira R. Kinjo, Masaaki Kotera, Kouji Kozaki, Sadahiro Kumagai, Tatsuya Kushida, Thomas Lütteke, Masaaki Matsubara, Joe Miyamoto, Attayeb Mohsen, Hiroshi Mori, Yuki Naito, Takeru Nakazato, Jeremy NguyenXuan, Kozo Nishida, Naoki Nishida, Hiroyo Nishide, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Benedict Paten, Jean-Luc Perret, Philip Prathipati, Pjotr Prins, Núria Queralt-Rosinach, Daisuke Shinmachi, Shinya Suzuki, Tsuyosi Tabata, Terue Takatsuki, Kieron R. Taylor, Mark Thompson, Ikuo Uchiyama, Bruno Vieira, Chih-Hsuan Wei, Mark D. Wilkinson, Issaku Yamada, Ryota Yamanaka, Kazutoshi Yoshitake, Akiyasu C. Yoshizawa, Michel Dumontier, Kenjiro Kosaki, Toshihisa Takagi

F1000Research, 2020

2019

TogoGenome/TogoStanza: modularized Semantic Web genome database.

Toshiaki Katayama, Shuichi Kawashima, Shinobu Okamoto, Yuki Moriya, Hirokazu Chiba, Yuki Naito, Takatomo Fujisawa, Hiroshi Mori, Toshihisa Takagi

Database J. Biol. Databases Curation, 2019

2015

CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites.

Yuki Naito, Kimihiro Hino, Hidemasa Bono, Kumiko Ui-Tei

Bioinform., 2015

2012

GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.

Yuki Naito, Hidemasa Bono

Nucleic Acids Res., 2012

2009

siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect.

Yuki Naito, Jun Yoshimura, Shinichi Morishita, Kumiko Ui-Tei

BMC Bioinform., 2009

Hardware-aware model of sigma-delta cellular neural network.

Hisashi Aomori, Yuki Naito, Tsuyoshi Otake, Nobuaki Takahashi, Ichiro Matsuda, Susumu Itoh, Mamoru Tanaka

Proceedings of the 19th European Conference on Circuit Theory and Design, 2009

2006

siVirus: web-based antiviral siRNA design software for highly divergent viral sequences.

Yuki Naito, Kumiko Ui-Tei, Toru Nishikawa, Yutaka Takebe, Kaoru Saigo

Nucleic Acids Res., 2006

2005

dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference.

Yuki Naito, Tomoyuki Yamada, Takahiro Matsumiya, Kumiko Ui-Tei, Kaoru Saigo, Shinichi Morishita

Nucleic Acids Res., 2005

2004

siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference.

Yuki Naito, Tomoyuki Yamada, Kumiko Ui-Tei, Shinichi Morishita, Kaoru Saigo

Nucleic Acids Res., 2004

2003

Ontology-Based Medical Information Service System.

Hirokazu Taki, Noriyuki Matsuda, Michiyasu Hiramatsu, Yuki Naito, Jiro Nakajima, Tadashi Nakamura, Akihisa Imagawa, Yuji Matsuzawa, Norihiro Abe, Satoshi Hori

Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2003