Werner Ceusters

Anuwat Pengput

Proceedings of the Formal Ontology in Information Systems, 2023

2021

Challenges in Realism-Based Ontology Design: A Case Study on Creating an Ontology for Motivational Learning Theories.

[BibT_eX]

[DOI]

Irshad Ally

Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

2020

Foundations for a Realism-Based Ontology of Protein Aggregates.

[BibT_eX]

[DOI]

Proceedings of the 11th International Conference on Biomedical Ontologies (ICBO) joint with the 10th Workshop on Ontologies and Data in Life Sciences (ODLS) and part of the Bolzano Summer of Knowledge (BoSK 2020), 2020

2019

Expanding Evolutionary Terminology Auditing with Historic Formal and Linguistic Intensions: A Case Study in SNOMED CT.

[BibT_eX]

[DOI]

Sarah Mullin

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Foundations for a Realism-based Drug Repurposing Ontology.

[BibT_eX]

[DOI]

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

Warranted Diagnosis.

[BibT_eX]

[DOI]

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

2018

Mismatches between major subhierarchies and semantic tags in SNOMED CT.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2018

On Defining Bruxism.

[BibT_eX]

[DOI]

Proceedings of the Building Continents of Knowledge in Oceans of Data: The Future of Co-Created eHealth, 2018

Caveats for the Use of the Active Problem List as Ground Truth for Decision Support.

[BibT_eX]

[DOI]

Jonathan Blaisure

Proceedings of the Decision Support Systems and Education, 2018

Enhancing the Representational Power of i2b2 through Referent Tracking.

[BibT_eX]

[DOI]

Jonathan C. Blaisure

Proceedings of the AMIA 2018, 2018

2017

A Realism-Based View on Counts in OMOP's Common Data Model.

[BibT_eX]

[DOI]

Jonathan Blaisure

Proceedings of the pHealth 2017, 2017

Classifying Processes and Basic Formal Ontology.

[BibT_eX]

[DOI]

Mustafa Jarrar

Proceedings of the 8th International Conference on Biomedical Ontology (ICBO 2017), Newcastle-upon-Tyne, United Kingdom, September 13th, 2017

Scrutinizing the Relationships Between SNOMED CT Concepts and Semantic Tags.

[BibT_eX]

[DOI]

Proceedings of the 8th International Conference on Biomedical Ontology (ICBO 2017), Newcastle-upon-Tyne, United Kingdom, September 13th, 2017

The Problems of Realism-Based Ontology Design: a Case Study in Creating Definitions for an Application Ontology for Diabetes Camps.

[BibT_eX]

[DOI]

James C. Schuler

Proceedings of the AMIA 2017, 2017

Improving the 'Fitness for Purpose' of Common Data Models through Realism Based Ontology.

[BibT_eX]

[DOI]

Jonathan C. Blaisure

Proceedings of the AMIA 2017, 2017

2016

Diagnosis, misdiagnosis, lucky guess, hearsay, and more: an ontological analysis.

[BibT_eX]

[DOI]

William R. Hogan

J. Biomed. Semant., 2016

Functions in Basic Formal Ontology.

[BibT_eX]

[DOI]

Andrew D. Spear

Appl. Ontology, 2016

Analysis of SNOMED "Bleeding" Concepts & Terms.

[BibT_eX]

[DOI]

Selja Seppälä

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Representing SNOMED CT Concept Evolutions using Process Profiles.

[BibT_eX]

[DOI]

Proceedings of the Joint Ontology Workshops 2016 Episode 2: The French Summer of Ontology co-located with the 9th International Conference on Formal Ontology in Information Systems (FOIS 2016), 2016

Ontologies of Dynamical Systems and Verifiable Ontology-Based Computation: Towards a Haskell-Based Implementation of Referent Tracking.

[BibT_eX]

[DOI]

Thomas Bittner

Proceedings of the Formal Ontology in Information Systems, 2016

Analyzing SNOMED CT's Historical Data: Pitfalls and Possibilities.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

Identifying Missing Finding Site Relations in SNOMED CT.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

2015

Biomarkers in the Ontology for General Medical Science.

[BibT_eX]

[DOI]

Proceedings of the Digital Healthcare Empowering Europeans, 2015

Aboutness: towards foundations for the Information Artifact Ontology.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Biomedical Ontology, 2015

An ontological analysis of diagnostic assertions in electronic healthcare records.

[BibT_eX]

[DOI]

William R. Hogan

Proceedings of the International Conference on Biomedical Ontology, 2015

Replacing EHR structured data with explicit representations.

[BibT_eX]

[DOI]

Proceedings of the International Conference on Biomedical Ontology, 2015

2014

Clinical Data Wrangling using Ontological Realism and Referent Tracking.

[BibT_eX]

[DOI]

Chiun Yu Hsu

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Pain Assessment Terminology in the NCBO BioPortal: Evaluation and Recommendations.

[BibT_eX]

[DOI]

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

Applying the Realism-Based Ontology-Versioning Method for Tracking Changes in the Basic Formal Ontology.

[BibT_eX]

[DOI]

Selja Seppälä

Proceedings of the Formal Ontology in Information Systems, 2014

2013

Applying Ontological Realism to Medically Unexplained Syndromes.

[BibT_eX]

[DOI]

Kristina Doing-Harris

Stéphane M. Meystre

Matthew H. Samore

Proceedings of the MEDINFO 2013, 2013

2012

An Information Artifact Ontology Perspective on Data Collections and Associated Representational Artifacts.

[BibT_eX]

[DOI]

Proceedings of the Quality of Life through Quality of Information, 2012

Wanting what we don't want to want: Representing addiction in interoperable bio-ontologies.

[BibT_eX]

[DOI]

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Domain and Application Ontologies for Medically Unexplained Syndromes.

[BibT_eX]

[DOI]

Kristina Doing-Harris

Stéphane M. Meystre

Matthew H. Samore

Proceedings of the AMIA 2012, 2012

2011

SNOMED CT's RF2: Is the Future Bright?

[BibT_eX]

[DOI]

Proceedings of the User Centered Networked Health Care - Proceedings of MIE 2011, 2011

Representing Local Identifiers in a Referent-Tracking System.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

AEO: A Realism-Based Biomedical Ontology for the Representation of Adverse Events.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Dispositions and Processes in the Emotion Ontology.

[BibT_eX]

[DOI]

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

The Emotion Ontology: Enabling Interdisciplinary Research in the Affective Sciences.

[BibT_eX]

[DOI]

Proceedings of the Modeling and Using Context, 2011

2010

Foundations for a realist ontology of mental disease.

[BibT_eX]

[DOI]

J. Biomed. Semant., 2010

Ontological realism: A methodology for coordinated evolution of scientific ontologies.

[BibT_eX]

[DOI]

Appl. Ontology, 2010

Introducing Ontological Realism for Semi-Supervised Detection and Annotation of Operationally Significant Activity in Surveillance Videos.

[BibT_eX]

[DOI]

Proceedings of the Fifth International Conference on Semantic Technologies for Intelligence, 2010

A Unified Framework for Biomedical Terminologies and Ontologies.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2010, 2010

2009

Applying evolutionary terminology auditing to the Gene Ontology.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2009

An Evolutionary Approach to the Representation of Adverse Events.

[BibT_eX]

[DOI]

Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009

2008

OnToContent+QSI 2008 PC Co-chairs' Message.

[BibT_eX]

[DOI]

Proceedings of the On the Move to Meaningful Internet Systems: OTM 2008 Workshops, 2008

Introducing Realist Ontology for the Representation of Adverse Events.

[BibT_eX]

[DOI]

Proceedings of the Formal Ontology in Information Systems, 2008

2007

Referent tracking for Digital Rights Management.

[BibT_eX]

[DOI]

Int. J. Metadata Semant. Ontologies, 2007

Negative findings in electronic health records and biomedical ontologies: A realist approach.

[BibT_eX]

[DOI]

Peter L. Elkin

Int. J. Medical Informatics, 2007

Implementation of a Referent Tracking System.

[BibT_eX]

[DOI]

Shahid Manzoor

Ron Rudnicki

Int. J. Heal. Inf. Syst. Informatics, 2007

OnToContent 2007 PC Co-chairs' Message.

[BibT_eX]

[DOI]

Proceedings of the On the Move to Meaningful Internet Systems 2007: OTM 2007 Workshops, 2007

Ontologies, Semantic Technologies, and Intelligence: Looking Toward the Future.

[BibT_eX]

[DOI]

Leo Obrst

Terry L. Janssen

Proceedings of the Ontologies and Semantic Technologies for Intelligence [papers from the Second International Ontology for the Intelligence Community (OIC) Conference, 2007

Introduction: Ontologies, Semantic Technologies, and Intelligence.

[BibT_eX]

[DOI]

Terry L. Janssen

Leo Obrst

Proceedings of the Ontologies and Semantic Technologies for Intelligence [papers from the Second International Ontology for the Intelligence Community (OIC) Conference, 2007

How to Track Absolutely Everything.

[BibT_eX]

[DOI]

Shahid Manzoor

Proceedings of the Ontologies and Semantic Technologies for Intelligence [papers from the Second International Ontology for the Intelligence Community (OIC) Conference, 2007

Reconciliation of Ontology and Terminology to Cope with Linguistics.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007

Referent Tracking and its Applications.

[BibT_eX]

[DOI]

Proceedings of the WWW2007 Workshop I<sup>3</sup>: Identity, Identifiers, 2007

What Particulars are Referred to in Electronic Health Record Data? A Case Study in Integrating Referent Tracking into an EHR Application.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2007, 2007

A Middleware Approach to Integrate Referent Tracking in EHR Systems.

[BibT_eX]

[DOI]

Shahid Manzoor

Ron Rudnicki

Proceedings of the AMIA 2007, 2007

Would SNOMED CT benefit from Realism-Based Ontology Evolution?

[BibT_eX]

[DOI]

Kent A. Spackman

Proceedings of the AMIA 2007, 2007

2006

Referent tracking for treatment optimisation in schizophrenic patients: A case study in applying philosophical ontology to diagnostic algorithms.

[BibT_eX]

[DOI]

J. Web Semant., 2006

Strategies for referent tracking in electronic health records.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2006

OnToContent 2006 PC Co-chairs' Message.

[BibT_eX]

[DOI]

Proceedings of the On the Move to Meaningful Internet Systems 2006: OTM 2006 Workshops, 2006

HL7 RIM: An Incoherent Standard.

[BibT_eX]

[DOI]

Proceedings of the Ubiquity: Technologies for Better Health in Aging Societies, 2006

Referent Tracking: The Problem of Negative Findings.

[BibT_eX]

[DOI]

Peter L. Elkin

Proceedings of the Ubiquity: Technologies for Better Health in Aging Societies, 2006

Towards a Reference Terminology for Ontology Research and Development in the Biomedical Domain.

[BibT_eX]

[DOI]

Proceedings of the KR-MED 2006, 2006

Towards A Realism-Based Metric for Quality Assurance in Ontology Matching.

[BibT_eX]

[DOI]

Proceedings of the Formal Ontology in Information Systems, 2006

A Realism-Based Approach to the Evolution of Biomedical Ontologies.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2006, 2006

2005

A novel view on information content of concepts in a large ontology and a view on the structure and the quality of the ontology.

[BibT_eX]

[DOI]

Carl Van Buggenhout

Int. J. Medical Informatics, 2005

The Significance of SNODENT.

[BibT_eX]

[DOI]

Proceedings of the Connecting Medical Informatics and Bio-Informatics - Proceedings of MIE 2005, 2005

Tracking Referents in Electronic Health Records.

[BibT_eX]

[DOI]

Proceedings of the Connecting Medical Informatics and Bio-Informatics - Proceedings of MIE 2005, 2005

Wüsteria.

[BibT_eX]

[DOI]

Rita Temmerman

Proceedings of the Connecting Medical Informatics and Bio-Informatics - Proceedings of MIE 2005, 2005

An Ontology-Based Methodology for the Migration of Biomedical Terminologies to Electronic Health Records.

[BibT_eX]

[DOI]

Mariana Casella dos Santos

Proceedings of the AMIA 2005, 2005

2004

Ontology-assisted database integration to support natural language processing and biomedical data-mining.

[BibT_eX]

[DOI]

Jean-Luc Verschelde

Tom Deray

J. Integr. Bioinform., 2004

Ontology-Based Error Detection in SNOMED-CT®.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2004, 2004

Ontological Theory for Ontological Engineering: Biomedical Systems Information Integration.

[BibT_eX]

[DOI]

James Matthew Fielding

Jonathan Simon

Proceedings of the Principles of Knowledge Representation and Reasoning: Proceedings of the Ninth International Conference (KR2004), 2004

LinkSuite™: Formally Robust Ontology-Based Data and Information Integration.

[BibT_eX]

[DOI]

James Matthew Fielding

Proceedings of the Data Integration in the Life Sciences, First International Workshop, 2004

2003

Using Cross-Lingual Information to Cope with Underspecification in Formal Ontologies.

[BibT_eX]

[DOI]

Proceedings of the New Navigators: from Professionals to Patients, 2003

A Novel View on Information Content of Concepts in Extremely Large Ontologies.

[BibT_eX]

[DOI]

Carl Van Buggenhout

Mariana Casella dos Santos

Proceedings of the New Navigators: from Professionals to Patients, 2003

2002

Some Ontology Engineering Processes and Their Supporting Technologies.

[BibT_eX]

[DOI]

Alan Flett

Proceedings of the Knowledge Engineering and Knowledge Management. Ontologies and the Semantic Web, 2002

1999

Syntactic-semantic tagging as a mediator between linguistic representations and formal models: an exercise in linking SNOMED to GALEN.

[BibT_eX]

[DOI]

Artif. Intell. Medicine, 1999

1998

Reconciling users' needs and formal requirements: issues in developing a reusable ontology for medicine.

[BibT_eX]

[DOI]

Egbert J. van der Haring

Judith C. Wagner

IEEE Trans. Inf. Technol. Biomed., 1998

From syntactic-semantic tagging to knowledge discovery in medical texts.

[BibT_eX]

[DOI]