Aaron Carass

Proceedings of the Medical Imaging 2020: Image Processing, 2020

Synthesizing Realistic Brain MR Images with Noise Control.

[BibT_eX]

[DOI]

Proceedings of the Simulation and Synthesis in Medical Imaging, 2020

Self Domain Adapted Network.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Inhomogeneity Correction in Magnetic Resonance Images Using Deep Image Priors.

[BibT_eX]

[DOI]

Proceedings of the Machine Learning in Medical Imaging - 11th International Workshop, 2020

A Disentangled Latent Space for Cross-Site MRI Harmonization.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Validating Uncertainty in Medical Image Translation.

[BibT_eX]

[DOI]

Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

2019

Automatic quality control using hierarchical shape analysis for cerebellum parcellation.

[BibT_eX]

[DOI]

Chiadikaobi U. Onyike

Proceedings of the Medical Imaging 2019: Image Processing, 2019

Evaluating the impact of intensity normalization on MR image synthesis.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2019: Image Processing, 2019

Cerebellum parcellation with convolutional neural networks.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2019: Image Processing, 2019

Fully Convolutional Boundary Regression for Retina OCT Segmentation.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Hierarchical Parcellation of the Cerebellum.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Projection Artifact Suppression For Inner Retina In Oct Angiography.

[BibT_eX]

[DOI]

Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

2018

Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images.

[BibT_eX]

[DOI]

Carlos R. Hernandez-Castillo

NeuroImage, 2018

Intensity inhomogeneity correction of SD-OCT data using macular flatspace.

[BibT_eX]

[DOI]

Medical Image Anal., 2018

Is the winner really the best? A critical analysis of common research practice in biomedical image analysis competitions.

[BibT_eX]

[DOI]

CoRR, 2018

Topology guaranteed segmentation of the human retina from OCT using convolutional neural networks.

[BibT_eX]

[DOI]

CoRR, 2018

Inter-scanner variation independent descriptors for constrained diffeomorphic demons registration of retina OCT.

[BibT_eX]

[DOI]

Sureerat Reaungamornrat

Proceedings of the Medical Imaging 2018: Image Processing, 2018

Deformable model reconstruction of the subarachnoid space.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2018: Image Processing, 2018

Inverse biomechanical modeling via machine learning and synthetic training data.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2018: Image-Guided Procedures, 2018

A Deep Learning Based Anti-aliasing Self Super-Resolution Algorithm for MRI.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Unpaired Brain MR-to-CT Synthesis Using a Structure-Constrained CycleGAN.

[BibT_eX]

[DOI]

Proceedings of the Deep Learning in Medical Image Analysis - and - Multimodal Learning for Clinical Decision Support, 2018

Shortcomings of Ventricle Segmentation Using Deep Convolutional Networks.

[BibT_eX]

[DOI]

Proceedings of the Understanding and Interpreting Machine Learning in Medical Image Computing Applications, 2018

Cross-Modality Image Synthesis from Unpaired Data Using CycleGAN - Effects of Gradient Consistency Loss and Training Data Size.

[BibT_eX]

[DOI]

Proceedings of the Simulation and Synthesis in Medical Imaging, 2018

Deep Harmonization of Inconsistent MR Data for Consistent Volume Segmentation.

[BibT_eX]

[DOI]

Proceedings of the Simulation and Synthesis in Medical Imaging, 2018

Automatic outlier detection using hidden Markov model for cerebellar lobule segmentation.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2018: Biomedical Applications in Molecular, 2018

Multi-atlas segmentation of the hydrocephalus brain using an adaptive ventricle atlas.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2018: Biomedical Applications in Molecular, 2018

Improving self super resolution in magnetic resonance images.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2018: Biomedical Applications in Molecular, 2018

Self super-resolution for magnetic resonance images using deep networks.

[BibT_eX]

[DOI]

Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Multi-layer fast level set segmentation for macular OCT.

[BibT_eX]

[DOI]

Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

2017

Thalamus segmentation using multi-modal feature classification: Validation and pilot study of an age-matched cohort.

[BibT_eX]

[DOI]

NeuroImage, 2017

Longitudinal multiple sclerosis lesion segmentation: Resource and challenge.

[BibT_eX]

[DOI]

NeuroImage, 2017

Random forest regression for magnetic resonance image synthesis.

[BibT_eX]

[DOI]

Medical Image Anal., 2017

Cross contrast multi-channel image registration using image synthesis for MR brain images.

[BibT_eX]

[DOI]

Medical Image Anal., 2017

Multi-atlas-based CT synthesis from conventional MRI with patch-based refinement for MRI-based radiotherapy planning.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2017: Image Processing, 2017

A Supervoxel Based Random Forest Synthesis Framework for Bidirectional MR/CT Synthesis.

[BibT_eX]

[DOI]

Proceedings of the Simulation and Synthesis in Medical Imaging, 2017

Whole Brain Segmentation and Labeling from CT Using Synthetic MR Images.

[BibT_eX]

[DOI]

Proceedings of the Machine Learning in Medical Imaging - 8th International Workshop, 2017

Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation.

[BibT_eX]

[DOI]

Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2017

Towards Topological Correct Segmentation of Macular OCT from Cascaded FCNs.

[BibT_eX]

[DOI]

Proceedings of the Fetal, Infant and Ophthalmic Medical Image Analysis, 2017

Falx Cerebri Segmentation via Multi-atlas Boundary Fusion.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Whole Brain Parcellation with Pathology: Validation on Ventriculomegaly Patients.

[BibT_eX]

[DOI]

Proceedings of the Patch-Based Techniques in Medical Imaging, 2017

Improving graph-based OCT segmentation for severe pathology in retinitis pigmentosa patients.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2017: Biomedical Applications in Molecular, 2017

Automatic falx cerebri and tentorium cerebelli segmentation from magnetic resonance images.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2017: Biomedical Applications in Molecular, 2017

Efficient multi-atlas registration using an intermediate template image.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2017: Biomedical Applications in Molecular, 2017

Longitudinal analysis of mouse SDOCT volumes.

[BibT_eX]

[DOI]

Bhavna Josephine Antony

Proceedings of the Medical Imaging 2017: Biomedical Applications in Molecular, 2017

2016

Automated cerebellar lobule segmentation with application to cerebellar structural analysis in cerebellar disease.

[BibT_eX]

[DOI]

NeuroImage, 2016

Consistent cortical reconstruction and multi-atlas brain segmentation.

[BibT_eX]

[DOI]

NeuroImage, 2016

Effects of spatial resolution on image registration.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2016: Image Processing, 2016

Landmark based shape analysis for cerebellar ataxia classification and cerebellar atrophy pattern visualization.

[BibT_eX]

[DOI]

Zhen Yang

Sayed Mazdak Abulnaga

Proceedings of the Medical Imaging 2016: Image Processing, 2016

Segmentation of thalamus from MR images via task-driven dictionary learning.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2016: Image Processing, 2016

Quality assurance using outlier detection on an automatic segmentation method for the cerebellar peduncles.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2016: Image Processing, 2016

Combined registration and motion correction of longitudinal retinal OCT data.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2016: Image Processing, 2016

Combining multi-atlas segmentation with brain surface estimation.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2016: Image Processing, 2016

Thalamus parcellation using multi-modal feature classification and thalamic nuclei priors.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2016: Image Processing, 2016

Segmentation and labeling of the ventricular system in normal pressure hydrocephalus using patch-based tissue classification and multi-atlas labeling.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2016: Image Processing, 2016

Simultaneous segmentation of retinal surfaces and microcystic macular edema in SDOCT volumes.

[BibT_eX]

[DOI]

Bhavna Josephine Antony

Proceedings of the Medical Imaging 2016: Image Processing, 2016

Self Super-Resolution for Magnetic Resonance Images.

[BibT_eX]

[DOI]

Amod Jog

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

A toolbox to visually explore cerebellar shape changes in cerebellar disease and dysfunction.

[BibT_eX]

[DOI]

Sayed Mazdak Abulnaga

Proceedings of the Medical Imaging 2016: Computer-Aided Diagnosis, San Diego, California, United States, 27 February, 2016

Voxel based morphometry in optical coherence tomography: validation and core findings.

[BibT_eX]

[DOI]

Bhavna Josephine Antony

Proceedings of the Medical Imaging 2016: Biomedical Applications in Molecular, Structural, and Functional Imaging, San Diego, California, United States, 27 February, 2016

Intensity inhomogeneity correction of macular OCT using N3 and retinal flatspace.

[BibT_eX]

[DOI]

Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

2015

Subject-Specific Sparse Dictionary Learning for Atlas-Based Brain MRI Segmentation.

[BibT_eX]

[DOI]

IEEE J. Biomed. Health Informatics, 2015

Deformation field correction for spatial normalization of PET images.

[BibT_eX]

[DOI]

NeuroImage, 2015

MR image synthesis by contrast learning on neighborhood ensembles.

[BibT_eX]

[DOI]

Medical Image Anal., 2015

MRBrainS Challenge: Online Evaluation Framework for Brain Image Segmentation in 3T MRI Scans.

[BibT_eX]

[DOI]

Comput. Intell. Neurosci., 2015

Longitudinal graph-based segmentation of macular OCT using fundus alignment.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2015: Image Processing, 2015

Multi-output decision trees for lesion segmentation in multiple sclerosis.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2015: Image Processing, 2015

Using image synthesis for multi-channel registration of different image modalities.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2015: Image Processing, 2015

Longitudinal Patch-Based Segmentation of Multiple Sclerosis White Matter Lesions.

[BibT_eX]

[DOI]

Proceedings of the Machine Learning in Medical Imaging - 6th International Workshop, 2015

Segmentation of microcystic macular edema in Cirrus OCT scans with an exploratory longitudinal study.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2015: Biomedical Applications in Molecular, 2015

Tree-Encoded Conditional Random Fields for Image Synthesis.

[BibT_eX]

[DOI]

Proceedings of the Information Processing in Medical Imaging, 2015

2014

Example based lesion segmentation.

[BibT_eX]

[DOI]

Daniel S. Reich

Dzung L. Pham

Proceedings of the Medical Imaging 2014: Image Processing, 2014

MR to CT registration of brains using image synthesis.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2014: Image Processing, 2014

An adaptive grid for graph-based segmentation in retinal OCT.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2014: Image Processing, 2014

Deep Learning for Cerebellar Ataxia Classification and Functional Score Regression.

[BibT_eX]

[DOI]

Proceedings of the Machine Learning in Medical Imaging - 5th International Workshop, 2014

Automatic Method for Thalamus Parcellation Using Multi-modal Feature Classification.

[BibT_eX]

[DOI]

Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Subject Specific Sparse Dictionary Learning for Atlas Based Brain MRI Segmentation.

[BibT_eX]

[DOI]

Proceedings of the Machine Learning in Medical Imaging - 5th International Workshop, 2014

Deformation Field Correction for Spatial Normalization of PET Images Using a Population-Derived Partial Least Squares Model.

[BibT_eX]

[DOI]

Proceedings of the Machine Learning in Medical Imaging - 5th International Workshop, 2014

Random forest FLAIR reconstruction from T1, T2, and PD-weighted MRI.

[BibT_eX]

[DOI]

Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Improving magnetic resonance resolution with supervised learning.

[BibT_eX]

[DOI]

Amod Jog

Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

A Bayesian Approach to Distinguishing Interdigitated Muscles in the Tongue from Limited Diffusion Weighted Imaging.

[BibT_eX]

[DOI]

Proceedings of the Bayesian and grAphical Models for Biomedical Imaging, 2014

2013

Magnetic Resonance Image Example-Based Contrast Synthesis.

[BibT_eX]

[DOI]

IEEE Trans. Medical Imaging, 2013

System for Integrated Neuroimaging Analysis and Processing of Structure.

[BibT_eX]

[DOI]

Neuroinformatics, 2013

Automatic magnetic resonance spinal cord segmentation with topology constraints for variable fields of view.

[BibT_eX]

[DOI]

NeuroImage, 2013

Automatic cell segmentation in fluorescence images of confluent cell monolayers using multi-object geometric deformable model.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2013: Image Processing, 2013

Longitudinal intensity normalization of magnetic resonance images using patches.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2013: Image Processing, 2013

Segmentation of retinal OCT images using a random forest classifier.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2013: Image Processing, 2013

Pulse sequence based multi-acquisition MR intensity normalization.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2013: Image Processing, 2013

Voxel-wise displacement as independent features in classification of multiple sclerosis.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2013: Image Processing, 2013

Automated anatomical labeling of the cerebral arteries using belief propagation.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2013: Image Processing, 2013

Atlas Based Intensity Transformation of Brain MR Images.

[BibT_eX]

[DOI]

Proceedings of the Multimodal Brain Image Analysis - Third International Workshop, 2013

Covariance shrinking in active shape models with application to gyral labeling of the cerebral cortex.

[BibT_eX]

[DOI]

Zhen Yang

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Longitudinal intensity normalization in the presence of multiple sclerosis lesions.

[BibT_eX]

[DOI]

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Patch based intensity normalization of brain MR images.

[BibT_eX]

[DOI]

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Magnetic resonance image synthesis through patch regression.

[BibT_eX]

[DOI]

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

Deformable registration of macular oct using a-mode scan similarity.

[BibT_eX]

[DOI]

Proceedings of the 10th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2013

2012

Consistent segmentation using a Rician classifier.

[BibT_eX]

[DOI]

Medical Image Anal., 2012

Topology preserving brain tissue segmentation using graph cuts.

[BibT_eX]

[DOI]

Proceedings of the 2012 IEEE Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Simultaneous cortical surface labeling and sulcal curve extraction.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2012: Image Processing, 2012

Automatic sulcal curve extraction with MRF based shape prior.

[BibT_eX]

[DOI]

Zhen Yang

Proceedings of the 9th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2012

2011

Simple paradigm for extra-cerebral tissue removal: Algorithm and analysis.

[BibT_eX]

[DOI]

NeuroImage, 2011

Intensity inhomogeneity correction of magnetic resonance images using patches.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2011: Image Processing, 2011

Distance transforms in multi channel MR image registration.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2011: Image Processing, 2011

Compressed sensing based intensity non-uniformity correction.

[BibT_eX]

[DOI]

Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

Topology preserving automatic segmentation of the spinal cord in magnetic resonance images.

[BibT_eX]

[DOI]

Min Chen

Pierre-Louis Bazin

Daniel S. Reich

Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

A Compressed Sensing Approach for MR Tissue Contrast Synthesis.

[BibT_eX]

[DOI]

Proceedings of the Information Processing in Medical Imaging, 2011

2010

Erratum to: The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software.

[BibT_eX]

[DOI]

Neuroinformatics, 2010

The Java Image Science Toolkit (JIST) for Rapid Prototyping and Publishing of Neuroimaging Software.

[BibT_eX]

[DOI]

Neuroinformatics, 2010

Longitudinal changes in cortical thickness associated with normal aging.

[BibT_eX]

[DOI]

NeuroImage, 2010

Synthesizing MR contrast and resolution through a patch matching technique.

[BibT_eX]

[DOI]

Proceedings of the Medical Imaging 2010: Image Processing, 2010

MR contrast synthesis for lesion segmentation.

[BibT_eX]

[DOI]

Proceedings of the 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2010

2009

A Rician Mixture Model Classification Algorithm for Magnetic Resonance Images.

[BibT_eX]

[DOI]

Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

2008

Automated reliable labeling of the cortical surface.

[BibT_eX]

[DOI]

Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Fuzzy c-means with variable compactness.

[BibT_eX]

[DOI]

Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Automatically identifying white matter tracts using cortical labels.

[BibT_eX]

[DOI]

Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

2007

A Joint Registration and Segmentation Approach to Skull Stripping.

[BibT_eX]

[DOI]

M. Bryan Wheeler

Pierre-Louis Bazin

Susan S. Bassett