Barend Mons

According to our database, Barend Mons authored at least 54 papers between 2000 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies.

Yu-Ning Huang, Michael I. Love, Cynthia Flaire Ronkowski, Dhrithi Deshpande, Lynn M. Schriml, Annie Wong-Beringer, Barend Mons, Russell Corbett-Detig, Christopher I Hunter, Jason H. Moore, Lana X. Garmire, T. B. K. Reddy, Winston A. Hide, Atul J. Butte, Mark D. Robinson, Serghei Mangul

CoRR, 2024

2023

The use of foundational ontologies in biomedical research.

César Henrique Bernabé, Núria Queralt-Rosinach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Barend Mons, Annika Jacobsen, Marco Roos

J. Biomed. Semant., December, 2023

A goal-oriented method for FAIRification planning.

César Henrique Bernabé, Tiago Prince Sales, Erik Schultes, Niek van Ulzen, Annika Jacobsen, Luiz Olavo Bonino da Silva Santos, Barend Mons, Marco Roos

Proceedings of the Companion Proceedings of the 42nd International Conference on Conceptual Modeling: ER Forum, 2023

2022

FAIR Digital Twins for Data-Intensive Research.

Erik Schultes, Marco Roos, Luiz Olavo Bonino da Silva Santos, Giancarlo Guizzardi, Jildau Bouwman, Thomas Hankemeier, Arie Baak, Barend Mons

Frontiers Big Data, 2022

Introduction to the Special Issue: Data Intelligence on Patient Health Records.

Mirjam van Reisen, Barend Mons

Data Intell., 2022

Playing catch-up in building an open research commons.

Philip E. Bourne, Vivien Bonazzi, Amy Brand, Bonnie Carroll, Ian T. Foster, Ramanathan V. Guha, Robert J. Hanisch, Sallie Ann Keller, Mary Lee Kennedy, Christine R. Kirkpatrick, Barend Mons, Sarah M. Nusser, Michael Stebbins, George O. Strawn, Alex Szalay

CoRR, 2022

Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic.

Núria Queralt-Rosinach, Rajaram Kaliyaperumal, César Henrique Bernabé, Qinqin Long, Simone A. Joosten, Henk Jan van der Wijk, Erik Flikkenschild, Kees Burger, Annika Jacobsen, Barend Mons, Marco Roos

J. Biomed. Semant., 2022

The Use of Foundational Ontologies in Bioinformatics.

César Henrique Bernabé, Núria Queralt-Rosinach, Vítor E. Silva Souza, Luiz Olavo Bonino da Silva Santos, Annika Jacobsen, Barend Mons, Marco Roos

Proceedings of the 13th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2022

2021

Comments to Jean-Claude Burgelman's article Politics and Open Science: How the European Open Science Cloud Became Reality (the Untold Story) - "EOSC is a bigger ME" and the Dunning Kruger effect.

Barend Mons

Data Intell., 2021

2020

Towards the Tipping Point for FAIR Implementation.

Mirjam van Reisen, Mia Stokmans, Mariam Basajja, Antony Otieno Ong'ayo, Christine R. Kirkpatrick, Barend Mons

Data Intell., 2020

The FAIR Principles: First Generation Implementation Choices and Challenges.

Barend Mons, Erik Schultes, Fenghong Liu, Annika Jacobsen

Data Intell., 2020

A Generic Workflow for the Data FAIRification Process.

Annika Jacobsen, Rajaram Kaliyaperumal, Luiz Olavo Bonino da Silva Santos, Barend Mons, Erik Schultes, Marco Roos, Mark Thompson

Data Intell., 2020

FAIR Principles: Interpretations and Implementation Considerations.

Annika Jacobsen, Ricardo de Miranda Azevedo, Nick S. Juty, Dominique Batista, Simon J. Coles, Ronald Cornet, Mélanie Courtot, Mercè Crosas, Michel Dumontier, Chris T. A. Evelo, Carole A. Goble, Giancarlo Guizzardi, Karsten Kryger Hansen, Ali Hasnain, Kristina M. Hettne, Jaap Heringa, Rob W. W. Hooft, Melanie Imming, Keith G. Jeffery, Rajaram Kaliyaperumal, Martijn G. Kersloot, Christine R. Kirkpatrick, Tobias Kuhn, Ignasi Labastida, Barbara Magagna, Peter McQuilton, Natalie Meyers, Annalisa Montesanti, Mirjam van Reisen, Philippe Rocca-Serra, Robert Pergl, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Juliane Schneider, George O. Strawn, Mark Thompson, Andra Waagmeester, Tobias Weigel, Mark D. Wilkinson, Egon L. Willighagen, Peter Wittenburg, Marco Roos, Barend Mons, Erik Schultes

Data Intell., 2020

FAIR Data Management to Access Patient Data.

Núria Queralt Rosinach, Rajaram Kaliyaperumal, César Henrique Bernabé, Qinqin Long, Henk Jan van der Wijk, Barend Mons, Marco Roos

Proceedings of the DaMaLOS, 2020

2019

FAIR Science for Social Machines: Let's Share Metadata Knowlets in the Internet of FAIR Data and Services.

Barend Mons

Data Intell., 2019

A Journal for Human and Machine.

James A. Hendler, Ying Ding, Barend Mons

Data Intell., 2019

2018

Bioinformatics in the Netherlands: the value of a nationwide community.

Celia W. G. van Gelder, Rob W. W. Hooft, Merlijn N. van Rijswijk, Linda van den Berg, Ruben G. Kok, Marcel J. T. Reinders, Barend Mons, Jaap Heringa

Briefings Bioinform., 2018

Ready, Set, GO FAIR: Accelerating Convergence to an Internet of FAIR Data and Services.

Erik A. Schultes, George O. Strawn, Barend Mons

Proceedings of the Selected Papers of the XX International Conference on Data Analytics and Management in Data Intensive Domains (DAMDID/RCDL 2018), 2018

2017

Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud.

Barend Mons, Cameron Neylon, Jan Velterop, Michel Dumontier, Luiz Olavo Bonino da Silva Santos, Mark D. Wilkinson

Inf. Serv. Use, 2017

Overview of a Suite of Tools and Training Material for Implementing FAIR Data Principles.

Mark Thompson, Luiz Olavo Bonino da Silva Santos, Kees Burger, Rajaram Kaliyaperumal, Erik A. Schultes, Annika Jacobsen, Claudio Carta, Richard Finkers, David van Enckevort, Mascha Jansen, Barend Mons, Marco Roos

Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

2015

Converting neXtProt into Linked Data and nanopublications.

Christine Chichester, Oliver Karch, Pascale Gaudet, Lydie Lane, Barend Mons, Amos Bairoch

Semantic Web, 2015

Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study.

Eleni Mina, Mark Thompson, Rajaram Kaliyaperumal, Jun Zhao, Eelke van der Horst, Zuotian Tatum, Kristina M. Hettne, Erik A. Schultes, Barend Mons, Marco Roos

J. Biomed. Semant., 2015

Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites.

Eelke van der Horst, Rajaram Kaliyaperumal, Zuotian Tatum, Mark Thompson, Erik A. Schultes, Eleni Mina, Ivo Fokkema, Johan T. den Dunnen, Marco Roos, Jeroen F. J. Laros, Barend Mons, Kristina M. Hettne, Peter A. C. 't Hoen

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

Multidisciplinary Collaboration to Facilitate Hypotheses Generation in Huntington's Disease.

Eleni Mina, Mark Thompson, Kristina M. Hettne, Willeke M. C. van Roon-Mom, Rajaram Kaliyaperumal, Eelke van der Horst, Katherine Wolstencroft, Barend Mons, Marco Roos

Proceedings of the 11th IEEE International Conference on e-Science, 2015

2014

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression.

Christine Chichester, Pascale Gaudet, Oliver Karch, Paul Groth, Lydie Lane, Amos Bairoch, Barend Mons, Antonis Loizou

J. Web Semant., 2014

Explain your data by Concept Profile Analysis Web Services.

Kristina M. Hettne, Reinout van Schouwen, Eleni Mina, Eelke van der Horst, Mark Thompson, Rajaram Kaliyaperumal, Barend Mons, Erik M. van Mulligen, Jan A. Kors, Marco Roos

F1000Research, 2014

Integrated Bio-Search: challenges and trends for the integration, search and comprehensive processing of biological information.

Marco Masseroli, Barend Mons, Erik Bongcam-Rudloff, Stefano Ceri, Alexander E. Kel, François Rechenmann, Frédérique Lisacek, Paolo Romano

BMC Bioinform., 2014

Bring Your Own Data Workshops: A Mechanism to Aid Data Owners to Comply with Linked Data Best Practices.

Marco Roos, Alasdair J. G. Gray, Andra Waagmeester, Mark Thompson, Rajaram Kaliyaperumal, Eelke van der Horst, Barend Mons, Mark D. Wilkinson

Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

2012

Data Publishing Using Nanopublications.

Mark Thompson, Erik A. Schultes, Marco Roos, Barend Mons

Tiny Trans. Comput. Sci., 2012

Theoretical And Technological Building Blocks For An Innovation Accelerator

Frank van Harmelen, George Kampis, Katy Börner, Peter van den Besselaar, Erik A. Schultes, Carole A. Goble, Paul Groth, Barend Mons, Stuart Anderson, Stefan Decker, Conor Hayes, Thierry Buecheler, Dirk Helbing

CoRR, 2012

Towards Computational Evaluation of Evidence for Scientific Assertions with Nanopublications.

Andrew P. Gibson, Jesse C. J. van Dam, Erik A. Schultes, Marco Roos, Barend Mons

Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

2011

Supporting nanopublication provenance: PMID2DOI converter.

Christine Chichester, Kees Burger, Hailiang Mei, Barend Mons

Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

2010

Import of ENZYME Data into the ConceptWiki and its Representation as RDF.

Paul Boekschoten, Kees Burger, Barend Mons, Christine Chichester

Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2010

2008

Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease.

Rob Jelier, Peter A. C. 't Hoen, Ellen Sterrenburg, Johan T. den Dunnen, Gert-Jan B. van Ommen, Jan A. Kors, Barend Mons

BMC Bioinform., 2008

2007

Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification.

Martijn J. Schuemie, Barend Mons, Marc Weeber, Jan A. Kors

J. Biomed. Informatics, 2007

Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation.

Rob Jelier, Guido Jenster, Lambert C. J. Dorssers, Bas J. Wouters, Peter J. M. Hendriksen, Barend Mons, Ruud Delwel, Jan A. Kors

BMC Bioinform., 2007

2006

Databases for knowledge discovery: Examples from biomedicine and health care.

Jan H. van Bemmel, Erik M. van Mulligen, Barend Mons, Mark A. van Wijk, Jan A. Kors, Johan van der Lei

Int. J. Medical Informatics, 2006

An Online Ontology: WiktionaryZ.

Erik M. van Mulligen, Erik Möller, Peter-Jan Roes, Marc Weeber, Gerard Meijssen, Barend Mons

Proceedings of the KR-MED 2006, 2006

2005

Word Sense Disambiguation in the Biomedical Domain: An Overview.

Martijn J. Schuemie, Jan A. Kors, Barend Mons

J. Comput. Biol., 2005

Thesaurus-based disambiguation of gene symbols.

Bob J. A. Schijvenaars, Barend Mons, Marc Weeber, Martijn J. Schuemie, Erik M. van Mulligen, Hester M. Wain, Jan A. Kors

BMC Bioinform., 2005

Which gene did you mean?

Barend Mons

BMC Bioinform., 2005

Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes.

Rob Jelier, Guido Jenster, Lambert C. J. Dorssers, C. Christiaan van der Eijk, Erik M. van Mulligen, Barend Mons, Jan A. Kors

Bioinform., 2005

Online tools to support literature-based discovery in the life sciences.

Marc Weeber, Jan A. Kors, Barend Mons

Briefings Bioinform., 2005

TREC 2005 Genomics Track A Concept-Based Approach to Text Categorization.

Bob J. A. Schijvenaars, Martijn J. Schuemie, Erik M. van Mulligen, Marc Weeber, Rob Jelier, Barend Mons, Jan A. Kors, Wessel Kraaij

Proceedings of the Fourteenth Text REtrieval Conference, 2005

2004

Constructing an associative concept space for literature-based discovery.

C. Christiaan van der Eijk, Erik M. van Mulligen, Jan A. Kors, Barend Mons, Jan van den Berg

J. Assoc. Inf. Sci. Technol., 2004

Distribution of information in biomedical abstracts and full-text publications.

Martijn J. Schuemie, Marc Weeber, Bob J. A. Schijvenaars, Erik M. van Mulligen, C. Christiaan van der Eijk, Rob Jelier, Barend Mons, Jan A. Kors

Bioinform., 2004

Contextual Annotation of Web Pages for Interactive Browsing.

Erik M. van Mulligen, Mario Diwersy, Bob J. A. Schijvenaars, Marc Weeber, C. Christiaan van der Eijk, Rob Jelier, Martijn J. Schuemie, Jan A. Kors, Barend Mons

Proceedings of the MEDINFO 2004, 2004

2003

Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification.

Rob Jelier, Martijn J. Schuemie, C. Christiaan van der Eijk, Marc Weeber, Erik M. van Mulligen, Bob J. A. Schijvenaars, Barend Mons, Jan A. Kors

Proceedings of The Twelfth Text REtrieval Conference, 2003

Ambiguity of Human Gene Symbols in LocusLink and MEDLINE: Creating an Inventory and a Disambiguation Test Collection.

Marc Weeber, Bob J. A. Schijvenaars, Erik M. van Mulligen, Barend Mons, Rob Jelier, C. Christiaan van der Eijk, Jan A. Kors

Proceedings of the AMIA 2003, 2003

Using Contextual Queries.

Bob J. A. Schijvenaars, Erik M. van Mulligen, Mario Diwersy, Marc Weeber, C. Christiaan van der Eijk, Rob Jelier, Jan A. Kors, Barend Mons

Proceedings of the AMIA 2003, 2003

Mining Microarray Datasets Aided by Knowledge Stored in Literature.

Rob Jelier, Guido Jenster, Lambert C. J. Dorssers, Erik M. van Mulligen, Barend Mons, Jan A. Kors

Proceedings of the AMIA 2003, 2003

2002

Research for research: tools for knowledge discovery and visualization.

Erik M. van Mulligen, C. Christiaan van der Eijk, Jan A. Kors, Bob J. A. Schijvenaars, Barend Mons

Proceedings of the AMIA 2002, 2002

2001

Architecture for Information Mediation.

Erik M. van Mulligen, Barend Mons, Martin Schmidt, Mario Diwersy, Achim Domma

Proceedings of the MEDINFO 2001, 2001

2000

Facilitating networks of information.

Erik M. van Mulligen, Mario Diwersy, Martin Schmidt, Henk Buurman, Barend Mons

Proceedings of the AMIA 2000, 2000