Jan A. Kors

According to our database1, Jan A. Kors authored at least 70 papers between 1986 and 2019.

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Bibliography

2019
Automatic identification of relevant chemical compounds from patents.
Database, 2019

Using Predicate Information from a Knowledge Graph to Identify Disease Trajectories.
Proceedings of the AAAI 2019 Spring Symposium on Combining Machine Learning with Knowledge Engineering (AAAI-MAKE 2019) Stanford University, 2019

2018
Using predicate and provenance information from a knowledge graph for drug efficacy screening.
J. Biomedical Semantics, 2018

2017
Automated extraction of potential migraine biomarkers using a semantic graph.
Journal of Biomedical Informatics, 2017

2016
Extraction of chemical-induced diseases using prior knowledge and textual information.
Database, 2016

Chemical entity recognition in patents by combining dictionary-based and statistical approaches.
Database, 2016

Discovering Information from an Integrated Graph Database.
Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

SEMCARE: Multilingual Semantic Search in Semi-Structured Clinical Data.
Proceedings of the Health Informatics Meets eHealth - Predictive Modeling in Healthcare - From Prediction to Prevention, 2016

Erasmus MC at CLEF eHealth 2016: Concept Recognition and Coding in French Texts.
Proceedings of the Working Notes of CLEF 2016, 2016

Concept Recognition in French Biomedical Text Using Automatic Translation.
Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2016

2015
The CHEMDNER corpus of chemicals and drugs and its annotation principles.
J. Cheminformatics, 2015

Ambiguity of non-systematic chemical identifiers within and between small-molecule databases.
J. Cheminformatics, 2015

Recognition of chemical entities: combining dictionary-based and grammar-based approaches.
J. Cheminformatics, 2015

A multilingual gold-standard corpus for biomedical concept recognition: the Mantra GSC.
JAMIA, 2015

Information from Semantic Integration of Texts and Databases.
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

Biomedical Concept Recognition in French Text Using Automatic Translation of English Terms.
Proceedings of the Working Notes of CLEF 2015, 2015


2014
Knowledge-based extraction of adverse drug events from biomedical text.
BMC Bioinformatics, 2014

ContextD: an algorithm to identify contextual properties of medical terms in a Dutch clinical corpus.
BMC Bioinformatics, 2014

A novel feature-based approach to extract drug-drug interactions from biomedical text.
Bioinformatics, 2014

2013
Improving sensitivity of machine learning methods for automated case identification from free-text electronic medical records.
BMC Med. Inf. & Decision Making, 2013

Using rule-based natural language processing to improve disease normalization in biomedical text.
JAMIA, 2013

Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview.
Proceedings of the Information Access Evaluation. Multilinguality, Multimodality, and Visualization, 2013

Machine Translation of Bio-Thesauri.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

Creating Multilingual Gold Standard Corpora for Biomedical Concept Recognition.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

A fast rule-based approach for biomedical event extraction.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

2012
Automatic Filtering and Substantiation of Drug Safety Signals.
PLoS Computational Biology, 2012

Consistency of systematic chemical identifiers within and between small-molecule databases.
J. Cheminformatics, 2012

The EU-ADR corpus: Annotated drugs, diseases, targets, and their relationships.
Journal of Biomedical Informatics, 2012

Using an ensemble system to improve concept extraction from clinical records.
Journal of Biomedical Informatics, 2012

Training text chunkers on a silver standard corpus: can silver replace gold?
BMC Bioinformatics, 2012

CALBC: Releasing the Final Corpora.
Proceedings of the Eighth International Conference on Language Resources and Evaluation, 2012

2011
Comparing and combining chunkers of biomedical text.
Journal of Biomedical Informatics, 2011

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.
J. Biomedical Semantics, 2011

2010
Finding a short and accurate decision rule in disjunctive normal form by exhaustive search.
Machine Learning, 2010

Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining (Correction).
J. Cheminformatics, 2010

Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining.
J. Cheminformatics, 2010

Calbc Silver Standard Corpus.
J. Bioinformatics and Computational Biology, 2010

A Concept Annotation System for Clinical Records
CoRR, 2010

Rewriting and suppressing UMLS terms for improved biomedical term identification.
J. Biomedical Semantics, 2010

GeneE: Gene and protein query expansion with disambiguation.
Bioinformatics, 2010

A Concept Annotation System for Clinical Records.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2010


The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers.
Proceedings of the International Conference on Language Resources and Evaluation, 2010

2009
A dictionary to identify small molecules and drugs in free text.
Bioinformatics, 2009

2008
Literature-based concept profiles for gene annotation: The issue of weighting.
I. J. Medical Informatics, 2008

Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease.
BMC Bioinformatics, 2008

Jane: suggesting journals, finding experts.
Bioinformatics, 2008

2007
Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification.
Journal of Biomedical Informatics, 2007

Text-derived concept profiles support assessment of DNA microarray data for acute myeloid leukemia and for androgen receptor stimulation.
BMC Bioinformatics, 2007

2006
Databases for knowledge discovery: Examples from biomedicine and health care.
I. J. Medical Informatics, 2006

2005
Word Sense Disambiguation in the Biomedical Domain: An Overview.
Journal of Computational Biology, 2005

Storing, linking, and mining microarray databases using SRS.
BMC Bioinformatics, 2005

Thesaurus-based disambiguation of gene symbols.
BMC Bioinformatics, 2005

Co-occurrence based meta-analysis of scientific texts: retrieving biological relationships between genes.
Bioinformatics, 2005

Online tools to support literature-based discovery in the life sciences.
Briefings in Bioinformatics, 2005

TREC 2005 Genomics Track A Concept-Based Approach to Text Categorization.
Proceedings of the Fourteenth Text REtrieval Conference, 2005

2004
Constructing an associative concept space for literature-based discovery.
JASIST, 2004

Distribution of information in biomedical abstracts and full-text publications.
Bioinformatics, 2004

Contextual Annotation of Web Pages for Interactive Browsing.
Proceedings of the MEDINFO 2004, 2004

2003
Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification.
Proceedings of The Twelfth Text REtrieval Conference, 2003

Ambiguity of Human Gene Symbols in LocusLink and MEDLINE: Creating an Inventory and a Disambiguation Test Collection.
Proceedings of the AMIA 2003, 2003


Mining Microarray Datasets Aided by Knowledge Stored in Literature.
Proceedings of the AMIA 2003, 2003

2002
Research for research: tools for knowledge discovery and visualization.
Proceedings of the AMIA 2002, 2002

2001
Employment of Intra-Individual Variability to Improve Computerized ECG Interpretation.
Proceedings of the MEDINFO 2001, 2001

The Coming of Age of Computerized ECG Processing: Can it Replace the Cardiologist in Epidemiological Studies and Clinical Trials?
Proceedings of the MEDINFO 2001, 2001

1997
Induction of decision rules that fulfil user-specified performance requirements.
Pattern Recognition Letters, 1997

1986
Adaptive Gaussian filtering in routine ECG/VCG analysis.
IEEE Trans. Acoustics, Speech, and Signal Processing, 1986


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