Blake A. Sweeney

According to our database, Blake A. Sweeney authored at least 8 papers between 2014 and 2026.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2026

GOFlowLLM - curating miRNA literature with large language models and flowcharts.

Andrew Green, Nancy Ontiveros-Palacios, Isaac Jandalala, Simona Panni, Valerie Wood, Giulia Antonazzo, Helen Attrill, Alex Bateman, Blake A. Sweeney

Bioinform., 2026

2025

LitSumm: large language models for literature summarization of noncoding RNAs.

Andrew Green, Carlos Eduardo Ribas, Nancy Ontiveros-Palacios, Sam Griffiths-Jones, Anton I. Petrov, Alex Bateman, Blake A. Sweeney

Database J. Biol. Databases Curation, 2025

2024

Comprehensive survey of conserved RNA secondary structures in full-genome alignment of Hepatitis C virus - Supplementary Files.

Sandra Triebel, Kevin Lamkiewicz, Nancy Ontiveros-Palacios, Blake A. Sweeney, Peter F. Stadler, Anton I. Petrov, Michael Niepmann, Manja Marz

Dataset, July, 2024

2023

LitSumm: Large language models for literature summarisation of non-coding RNAs.

Andrew Green, Carlos Eduardo Ribas, Nancy Ontiveros-Palacios, Anton I. Petrov, Alex Bateman, Blake A. Sweeney

CoRR, 2023

2021

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.

Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg

Nucleic Acids Res., 2021

2016

JAR3D Webserver: Scoring and aligning RNA loop sequences to known 3D motifs.

James Roll, Craig L. Zirbel, Blake A. Sweeney, Anton I. Petrov, Neocles Leontis

Nucleic Acids Res., 2016

2015

R3D-2-MSA: the RNA 3D structure-to-multiple sequence alignment server.

Jamie J. Cannone, Blake A. Sweeney, Anton I. Petrov, Robin Ray Gutell, Craig L. Zirbel, Neocles Leontis

Nucleic Acids Res., 2015

2014

The Nucleic Acid Database: new features and capabilities.

Buvaneswari Coimbatore Narayanan, John D. Westbrook, Saheli Ghosh, Anton I. Petrov, Blake A. Sweeney, Craig L. Zirbel, Neocles Leontis, Helen M. Berman

Nucleic Acids Res., 2014