Sam Griffiths-Jones

According to our database, Sam Griffiths-Jones authored at least 21 papers between 2002 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2021

RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.

Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg

Nucleic Acids Res., 2021

Rfam 14: expanded coverage of metagenomic, viral and microRNA families.

Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov

Nucleic Acids Res., 2021

2019

miRBase: from microRNA sequences to function.

Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones

Nucleic Acids Res., 2019

2015

Bias in microRNA functional enrichment analysis.

Thomas Bleazard, Janine A. Lamb, Sam Griffiths-Jones

Bioinform., 2015

2014

miRBase: annotating high confidence microRNAs using deep sequencing data.

Ana Kozomara, Sam Griffiths-Jones

Nucleic Acids Res., 2014

2012

Detection of microRNAs in color space.

Antonio Marco, Sam Griffiths-Jones

Bioinform., 2012

2011

miRBase: integrating microRNA annotation and deep-sequencing data.

Ana Kozomara, Sam Griffiths-Jones

Nucleic Acids Res., 2011

Rfam: Wikipedia, clans and the "decimal" release.

Paul P. Gardner, Jennifer Daub, John G. Tate, Benjamin L. Moore, Isabelle H. Osuch, Sam Griffiths-Jones, Robert D. Finn, Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy, Alex Bateman

Nucleic Acids Res., 2011

2009

Rfam: updates to the RNA families database.

Paul P. Gardner, Jennifer Daub, John G. Tate, Eric P. Nawrocki, Diana L. Kolbe, Stinus Lindgreen, Adam C. Wilkinson, Robert D. Finn, Sam Griffiths-Jones, Sean R. Eddy, Alex Bateman

Nucleic Acids Res., 2009

2008

miRBase: tools for microRNA genomics.

Sam Griffiths-Jones, Harpreet Kaur Saini, Stijn van Dongen, Anton J. Enright

Nucleic Acids Res., 2008

2006

miRBase: microRNA sequences, targets and gene nomenclature.

Sam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright

Nucleic Acids Res., 2006

Pfam: clans, web tools and services.

Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman

Nucleic Acids Res., 2006

2005

Rfam: annotating non-coding RNAs in complete genomes.

Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy, Alex Bateman

Nucleic Acids Res., 2005

RALEE--RNA ALignment Editor in Emacs.

Sam Griffiths-Jones

Bioinform., 2005

2004

The microRNA Registry.

Sam Griffiths-Jones

Nucleic Acids Res., 2004

The Pfam protein families database.

Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy

Nucleic Acids Res., 2004

2003

The InterPro Database, 2003 brings increased coverage and new features.

Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov

Nucleic Acids Res., 2003

Rfam: an RNA family database.

Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R. Eddy

Nucleic Acids Res., 2003

2002

The Pfam Protein Families Database.

Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Ettwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer

Nucleic Acids Res., 2002

The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs.

Sam Griffiths-Jones, Alex Bateman

Bioinform., 2002

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites

Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist

Briefings Bioinform., 2002