Francisco M. Couto
Orcid: 0000-0003-0627-1496
According to our database1,
Francisco M. Couto
authored at least 141 papers
between 2003 and 2024.
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Bibliography
2024
ACM Comput. Surv., June, 2024
2023
DGH-GO: dissecting the genetic heterogeneity of complex diseases using gene ontology.
BMC Bioinform., December, 2023
Adv. Comput., 2023
lasigeBioTM at SemEval-2023 Task 7: Improving Natural Language Inference Baseline Systems with Domain Ontologies.
Proceedings of the The 17th International Workshop on Semantic Evaluation, 2023
2022
IEEE J. Biomed. Health Informatics, 2022
J. Biomed. Informatics, 2022
2021
J. Cheminformatics, 2021
Information Retrieval Using Machine Learning for Biomarker Curation in the Exposome-Explorer.
Frontiers Res. Metrics Anal., 2021
Lasige-BioTM at ProfNER: BiLSTM-CRF and contextual Spanish embeddings for Named Entity Recognition and Tweet Binary Classification.
Proceedings of the Sixth Social Media Mining for Health Workshop and Shared Task, 2021
Proceedings of the 16th International Workshop on Ontology Matching co-located with the 20th International Semantic Web Conference (ISWC 2021), 2021
Proceedings of the KDD '21: The 27th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2021
LASIGE-BioTM at MESINESP2: entity linking with semantic similarity and extreme multi-label classification on Spanish biomedical documents.
Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to, 2021
Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to, 2021
Proceedings of the Artificial Neural Networks - Third Edition., 2021
2020
DNA-SeAl: Sensitivity Levels to Optimize the Performance of Privacy-Preserving DNA Alignment.
IEEE J. Biomed. Health Informatics, 2020
Linking chemical and disease entities to ontologies by integrating PageRank with extracted relations from literature.
J. Cheminformatics, 2020
A hybrid approach toward biomedical relation extraction training corpora: combining distant supervision with crowdsourcing.
Database J. Biol. Databases Curation, 2020
LasigeBioTM at CANTEMIST: Named Entity Recognition and Normalization of Tumour Morphology Entities and Clinical Coding of Spanish Health-related Documents.
Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2020) co-located with 36th Conference of the Spanish Society for Natural Language Processing (SEPLN 2020), 2020
Proceedings of the 15th International Workshop on Ontology Matching co-located with the 19th International Semantic Web Conference (ISWC 2020), 2020
Proceedings of the RecSys 2020: Fourteenth ACM Conference on Recommender Systems, 2020
Proceedings of the 1st Workshop on NLP for COVID-19@ EMNLP 2020, Online, December 2020, 2020
Proceedings of the Advances in Information Retrieval, 2020
Towards a Multilingual Corpus for Named Entity Linking Evaluation in the Clinical Domain.
Proceedings of the Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages co-located with 42nd European Conference on Information Retrieval, 2020
Biomedical Question Answering using Extreme Multi-Label Classification and Ontologies in the Multilingual Panorama.
Proceedings of the Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages co-located with 42nd European Conference on Information Retrieval, 2020
Report of the First International Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages.
Proceedings of the Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages co-located with 42nd European Conference on Information Retrieval, 2020
Proposal of the First International Workshop on Semantic Indexing and Information Retrieval for Health from Heterogeneous Content Types and Languages (SIIRH).
Proceedings of the Advances in Information Retrieval, 2020
Proceedings of the Advances in Information Retrieval, 2020
LasigeBioTM Team at CLEF2020 ChEMU Evaluation Lab: Named Entity Recognition and Event extraction from chemical reactions described in patents using BioBERT NER and RE.
Proceedings of the Working Notes of CLEF 2020, 2020
Extreme Multi-Label Classification applied to the Biomedical and Multilingual Panorama.
Proceedings of the Working Notes of CLEF 2020, 2020
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents.
Proceedings of the Working Notes of CLEF 2020, 2020
2019
BO-LSTM: classifying relations via long short-term memory networks along biomedical ontologies.
BMC Bioinform., December, 2019
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019
BMC Bioinform., 2019
Using Research Literature to Generate Datasets of Implicit Feedback for Recommending Scientific Items.
IEEE Access, 2019
Proceedings of the 14th International Workshop on Ontology Matching co-located with the 18th International Semantic Web Conference (ISWC 2019), 2019
Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2019
LasigeBioTM at MEDIQA 2019: Biomedical Question Answering using Bidirectional Transformers and Named Entity Recognition.
Proceedings of the 18th BioNLP Workshop and Shared Task, 2019
2018
MER: a shell script and annotation server for minimal named entity recognition and linking.
J. Cheminformatics, 2018
J. Biomed. Informatics, 2018
Proceedings of the 13th International Workshop on Ontology Matching co-located with the 17th International Semantic Web Conference, 2018
2017
J. Integr. Bioinform., 2017
CoRR, 2017
Database J. Biol. Databases Curation, 2017
Proceedings of the 12th International Workshop on Ontology Matching co-located with the 16th International Semantic Web Conference (ISWC 2017), 2017
Proceedings of the 11th International Workshop on Semantic Evaluation, 2017
ULISBOA at SemEval-2017 Task 12: Extraction and classification of temporal expressions and events.
Proceedings of the 11th International Workshop on Semantic Evaluation, 2017
Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017
Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017
Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017
Proceedings of the 11th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2017
2016
WS4A: a Biomedical Question and Answering System based on public Web Services and Ontologies.
CoRR, 2016
Proceedings of the 11th International Workshop on Ontology Matching co-located with the 15th International Semantic Web Conference (ISWC 2016), 2016
ULISBOA at SemEval-2016 Task 12: Extraction of temporal expressions, clinical events and relations using IBEnt.
Proceedings of the 10th International Workshop on Semantic Evaluation, 2016
Extraction of Regulatory Events using Kernel-based Classifiers and Distant Supervision.
Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, 2016
2015
J. Cheminformatics, 2015
J. Cheminformatics, 2015
Automatic concept recognition using the Human Phenotype Ontology reference and test suite corpora.
Database J. Biol. Databases Curation, 2015
The semantic web in translational medicine: current applications and future directions.
Briefings Bioinform., 2015
Proceedings of the 14th ACM Workshop on Privacy in the Electronic Society, 2015
Proceedings of the 10th International Workshop on Ontology Matching collocated with the 14th International Semantic Web Conference (ISWC 2015), 2015
Proceedings of the 9th International Workshop on Semantic Evaluation, 2015
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2015
Annotating biomedical ontology terms in electronic health records using crowd-sourcing.
Proceedings of the International Conference on Biomedical Ontology, 2015
Proceedings of the Progress in Artificial Intelligence, 2015
2014
J. Integr. Bioinform., 2014
The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources.
J. Biomed. Semant., 2014
Proceedings of the International Web for All Conference, 2014
Proceedings of the 37th International ACM SIGIR Conference on Research and Development in Information Retrieval, 2014
Building reference alignments for compound matching of multiple ontologies using OBO cross-products.
Proceedings of the 9th International Workshop on Ontology Matching collocated with the 13th International Semantic Web Conference (ISWC 2014), 2014
Proceedings of the ISWC 2014 Posters & Demonstrations Track a track within the 13th International Semantic Web Conference, 2014
Proceedings of the 9th International Workshop on Ontology Matching collocated with the 13th International Semantic Web Conference (ISWC 2014), 2014
Proceedings of the Semantic Web - ISWC 2014, 2014
Rating, Recognizing and Rewarding Metadata Integration and Sharing on the Semantic Web.
Proceedings of the 10th International Workshop on Uncertainty Reasoning for the Semantic Web (URSW 2014) co-located with the 13th International Semantic Web Conference (ISWC 2014), 2014
Proceedings of the 8th International Workshop on Semantic Evaluation, 2014
Chemical Named Entity Recognition: Improving Recall Using a Comprehensive List of Lexical Features.
Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014
Proceedings of the Data Integration in the Life Sciences - 10th International Conference, 2014
2013
The Next Generation of Similarity Measures that Fully Explore the Semantics in Biomedical Ontologies.
J. Bioinform. Comput. Biol., 2013
CoRR, 2013
CIDS country rankings: comparing documents and citations of USA, UK and China top researchers.
CoRR, 2013
Bioinform., 2013
Proceedings of the 22nd International World Wide Web Conference, 2013
Proceedings of the Semantic Web - ISWC 2013, 2013
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments.
Proceedings of the 8th International Workshop on Ontology Matching co-located with the 12th International Semantic Web Conference (ISWC 2013), 2013
Proceedings of the 8th International Workshop on Ontology Matching co-located with the 12th International Semantic Web Conference (ISWC 2013), 2013
Proceedings of the 7th International Workshop on Semantic Evaluation, 2013
Proceedings of the 7th International Workshop on Semantic Evaluation, 2013
Proceedings of the On the Move to Meaningful Internet Systems: OTM 2013 Conferences, 2013
Proceedings of the 10th International Conference on Digital Preservation, 2013
2012
Proceedings of the Computational Processing of the Portuguese Language, 2012
Proceedings of the Information Technology in Bio- and Medical Informatics, 2012
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012
The Epidemic Marketplace Platform: towards semantic characterization of epidemiological resources using biomedical ontologies.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012
2011
Trans. Large Scale Data Knowl. Centered Syst., 2011
Disjunctive shared information between ontology concepts: application to Gene Ontology.
J. Biomed. Semant., 2011
Proceedings of the Fourth Text Analysis Conference, 2011
Proceedings of the 6th International Workshop on Ontology Matching, 2011
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011
2010
PLoS Comput. Biol., 2010
ERCIM News, 2010
Proceedings of the 5th International Workshop on Ontology Matching (OM-2010), 2010
Proceedings of the Information Technology in Bio- and Medical Informatics, 2010
Proceedings of the 6th Workshop on Geographic Information Retrieval, 2010
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2010
2009
Measuring coherence between electronic and manual annotations in biological databases.
Proceedings of the 2009 ACM Symposium on Applied Computing (SAC), 2009
Proceedings of the Distributed Computing, 2009
Proceedings of the Distributed Computing, 2009
Proceedings of the Distributed Computing, 2009
Proceedings of the Information Retrieval in Biomedicine, 2009
2008
BMC Bioinform., 2008
Proceedings of the Third IEEE International Conference on Digital Information Management (ICDIM), 2008
2007
2006
Proceedings of the 2006 ACM CIKM International Conference on Information and Knowledge Management, 2006
2005
Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors.
Proceedings of the 2005 ACM CIKM International Conference on Information and Knowledge Management, Bremen, Germany, October 31, 2005
2004
Proceedings of the 2004 ACM Symposium on Applied Computing (SAC), 2004
2003
ProFAL: PROtein Functional Annotation through Literature.
Proceedings of the VIII Jornadas Ingeniería del Software y Bases de Datos (JISBD 2003), 2003