Petr Skoda

According to our database, Petr Skoda authored at least 37 papers between 2009 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Knowledge Graphs for the Life Sciences: Recent Developments, Challenges and Opportunities.

Jiaoyan Chen, Hang Dong, Janna Hastings, Ernesto Jiménez-Ruiz, Vanessa López, Pierre Monnin, Catia Pesquita, Petr Skoda, Valentina A. M. Tamma

TGDK, 2023

Atlas: A Toolset for Efficient Model-Driven Data Exchange in Data Spaces.

Jakub Klímek, Pavel Koupil, Petr Skoda, Jáchym Bártík, Stepán Stenchlák, Martin Necaský, Irena Holubová

Proceedings of the ACM/IEEE International Conference on Model Driven Engineering Languages and Systems, 2023

2022

Modular framework for similarity-based dataset discovery using external knowledge.

Martin Necaský, Petr Skoda, David Bernhauer, Jakub Klímek, Tomás Skopal

Data Technol. Appl., 2022

PDBe-KB: collaboratively defining the biological context of structural data.

Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar

Nucleic Acids Res., 2022

PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures.

David Jakubec, Petr Skoda, Radoslav Krivák, Marian Novotny, David Hoksza

Nucleic Acids Res., 2022

Open dataset discovery using context-enhanced similarity search.

David Bernhauer, Martin Necaský, Petr Skoda, Jakub Klímek, Tomás Skopal

Knowl. Inf. Syst., 2022

DataSpecer: A Model-Driven Approach to Managing Data Specifications.

Stepán Stenchlák, Martin Necaský, Petr Skoda, Jakub Klímek

Proceedings of the Semantic Web: ESWC 2022 Satellite Events - Hersonissos, Crete, Greece, May 29, 2022

2021

Similarity vs. Relevance: From Simple Searches to Complex Discovery.

Tomás Skopal, David Bernhauer, Petr Skoda, Jakub Klímek, Martin Necaský

Proceedings of the Similarity Search and Applications - 14th International Conference, 2021

2020

PDBe-KB: a community-driven resource for structural and functional annotations.

Mihaly Varadi, John M. Berrisford, Mandar S. Deshpande, Sreenath Nair, Aleksandras Gutmanas, David R. Armstrong, Lukás Pravda, Bissan Al-Lazikani, Stephen Anyango, Geoffrey J. Barton, Karel Berka, Tom L. Blundell, Neera Borkakoti, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Fábio Madeira, M. S. Madhusudhan, Henry J. Martell, Stuart A. MacGowan, Jake E. McGreig, Saqib Mir, Abhik Mukhopadhyay, Luca Parca, Typhaine Paysan-Lafosse, Leandro G. Radusky, António J. M. Ribeiro, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda, Radka Svobodová Vareková, Jonathan D. Tyzack, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar

Nucleic Acids Res., 2020

Visualizer of Dataset Similarity Using Knowledge Graph.

Petr Skoda, Jakub Matejík, Tomás Skopal

Proceedings of the Similarity Search and Applications - 13th International Conference, 2020

Evaluation Framework for Search Methods Focused on Dataset Findability in Open Data Catalogs.

Petr Skoda, David Bernhauer, Martin Necaský, Jakub Klímek, Tomás Skopal

Proceedings of the iiWAS '20: The 22nd International Conference on Information Integration and Web-based Applications & Services, Virtual Event / Chiang Mai, Thailand, November 30, 2020

Open IE-Triples Inference - Corpora Development and DNN Architectures.

Martin Víta, Petr Skoda

Proceedings of the 2020 Federated Conference on Computer Science and Information Systems, 2020

2019

Survey of tools for Linked Data consumption.

Jakub Klímek, Petr Skoda, Martin Necaský

Semantic Web, 2019

PrankWeb: a web server for ligand binding site prediction and visualization.

Lukás Jendele, Radoslav Krivák, Petr Skoda, Marian Novotny, David Hoksza

Nucleic Acids Res., 2019

Explainable Similarity of Datasets Using Knowledge Graph.

Petr Skoda, Jakub Klímek, Martin Necaský, Tomás Skopal

Proceedings of the Similarity Search and Applications - 12th International Conference, 2019

2018

UnifiedViews: An ETL tool for RDF data management.

Tomás Knap, Peter Hanecák, Jakub Klímek, Christian Mader, Martin Necaský, Bert Van Nuffelen, Petr Skoda

Semantic Web, 2018

LinkedPipes DCAT-AP Viewer: A Native DCAT-AP Data Catalog.

Jakub Klímek, Petr Skoda

Proceedings of the ISWC 2018 Posters & Demonstrations, Industry and Blue Sky Ideas Tracks co-located with 17th International Semantic Web Conference (ISWC 2018), Monterey, USA, October 8th - to, 2018

Software framework for similarity-based prediction of protein interfaces.

Jan Jelínek, Petr Skoda, David Hoksza

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017

Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sites.

Jan Jelínek, Petr Skoda, David Hoksza

BMC Bioinform., 2017

Speeding up Publication of Linked Data Using Data Chunking in LinkedPipes ETL.

Jakub Klímek, Petr Skoda

Proceedings of the On the Move to Meaningful Internet Systems. OTM 2017 Conferences, 2017

LinkedPipes ETL in use: practical publication and consumption of linked data.

Jakub Klímek, Petr Skoda

Proceedings of the 19th International Conference on Information Integration and Web-based Applications & Services, 2017

Practical Use Cases for Linked Open Data in eGovernment Demonstrated on the Czech Republic.

Martin Necaský, Jakub Klímek, Petr Skoda

Proceedings of the Electronic Government and the Information Systems Perspective, 2017

Platform for ligand-based virtual screening integration.

Petr Skoda, David Hoksza, Jan Jelínek

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Improving quality of ligand-binding site prediction with Bayesian optimization.

Radoslav Krivák, David Hoksza, Petr Skoda

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

2016

Requirements on Linked Data Consumption Platform.

Jakub Klímek, Petr Skoda, Martin Necaský

Proceedings of the Workshop on Linked Data on the Web, 2016

Reusable transformations of Data Cube Vocabulary datasets from the fiscal domain.

Jindrich Mynarz, Jakub Klímek, Marek Dudás, Petr Skoda, Christiane Engels, Fathoni A. Musyaffa, Vojtech Svátek

Proceedings of the 4th International Workshop on Semantic Statistics co-located with 15th International Semantic Web Conference, 2016

LinkedPipes ETL: Evolved Linked Data Preparation.

Jakub Klímek, Petr Skoda, Martin Necaský

Proceedings of the Semantic Web - ESWC 2016 Satellite Events, Heraklion, Crete, Greece, May 29, 2016

Using Bayesian modeling on molecular fragments features for virtual screening.

David Hoksza, Petr Skoda

Proceedings of the 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2016

Benchmarking platform for ligand-based virtual screening.

Petr Skoda, David Hoksza

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015

UnifiedViews: Towards ETL Tool for Simple yet Powerfull RDF Data Management.

Tomás Knap, Petr Skoda, Jakub Klímek, Martin Necaský

Proceedings of the Dateso 2015 Annual International Workshop on DAtabases, 2015

Exploration of topological torsion fingerprints.

Petr Skoda, David Hoksza

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

Molpher: a software framework for systematic chemical space exploration.

David Hoksza, Petr Skoda, Milan Vorsilák, Daniel Svozil

J. Cheminformatics, 2014

2D Pharmacophore Query Generation.

David Hoksza, Petr Skoda

Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014

UnifiedViews: An ETL Framework for Sustainable RDF Data Processing.

Tomás Knap, Maria Kukhar, Bohuslav Machác, Petr Skoda, Jirí Tomes, Ján Vojt

Proceedings of the Semantic Web: ESWC 2014 Satellite Events, 2014

Scaffold-based chemical space exploration.

David Hoksza, Petr Skoda

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

Chemical space visualization using ViFrame.

Petr Skoda, David Hoksza

Proceedings of the 2013 IEEE/ACIS 12th International Conference on Computer and Information Science, 2013

2009

Computability of Width of Submodular Partition Functions.

Petr Skoda

Proceedings of the Combinatorial Algorithms, 20th International Workshop, 2009