Cyrus Chothia

According to our database, Cyrus Chothia authored at least 22 papers between 1997 and 2015.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2015

Genome3D: exploiting structure to help users understand their sequences.

Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Domenico Cozzetto, Jose M. Dana, Ioannis Filippis, Julian Gough, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Jaina Mistry, Alexey G. Murzin, Bernardo Ochoa-Montaño, Matt E. Oates, Marco Punta, Owen J. L. Rackham, Jonathan Stahlhacke, Michael J. E. Sternberg, Sameer Velankar, Christine A. Orengo

Nucleic Acids Res., 2015

2014

SCOP2 prototype: a new approach to protein structure mining.

Antonina Andreeva, Dave Howorth, Cyrus Chothia, Eugene Kulesha, Alexey G. Murzin

Nucleic Acids Res., 2014

2013

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.

Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Alison L. Cuff, Jose M. Dana, Ioannis Filippis, Julian Gough, Sarah Hunter, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Alex L. Mitchell, Alexey G. Murzin, Bernardo Ochoa-Montaño, Owen J. L. Rackham, James Smith, Michael J. E. Sternberg, Sameer Velankar, Corin Yeats, Christine A. Orengo

Nucleic Acids Res., 2013

2011

SUPERFAMILY 1.75 including a domain-centric gene ontology method.

David A. de Lima Morais, Hai Fang, Owen J. L. Rackham, Derek Wilson, Ralph Pethica, Cyrus Chothia, Julian Gough

Nucleic Acids Res., 2011

2009

SUPERFAMILY - sophisticated comparative genomics, data mining, visualization and phylogeny.

Derek Wilson, Ralph Pethica, Yiduo Zhou, Charles Talbot, Christine Vogel, Martin Madera, Cyrus Chothia, Julian Gough

Nucleic Acids Res., 2009

2008

Data growth and its impact on the SCOP database: new developments.

Antonina Andreeva, Dave Howorth, John-Marc Chandonia, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin

Nucleic Acids Res., 2008

2007

The SUPERFAMILY database in 2007: families and functions.

Derek Wilson, Martin Madera, Christine Vogel, Cyrus Chothia, Julian Gough

Nucleic Acids Res., 2007

2006

Protein Family Expansions and Biological Complexity.

Christine Vogel, Cyrus Chothia

PLoS Comput. Biol., 2006

3D Complex: A Structural Classification of Protein Complexes.

Emmanuel D. Levy, José B. Pereira-Leal, Cyrus Chothia, Sarah A. Teichmann

PLoS Comput. Biol., 2006

2004

The SUPERFAMILY database in 2004: additions and improvements.

Martin Madera, Christine Vogel, Sarah K. Kummerfeld, Cyrus Chothia, Julian Gough

Nucleic Acids Res., 2004

SCOP database in 2004: refinements integrate structure and sequence family data.

Antonina Andreeva, Dave Howorth, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin

Nucleic Acids Res., 2004

2002

SUPERFAMILY: HMMs representing all proteins of known structure. SCOP sequence searches, alignments and genome assignments.

Julian Gough, Cyrus Chothia

Nucleic Acids Res., 2002

SCOP database in 2002: refinements accommodate structural genomics.

Loredana Lo Conte, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin

Nucleic Acids Res., 2002

2000

SCOP: a Structural Classification of Proteins database.

Loredana Lo Conte, Bart Ailey, Tim J. P. Hubbard, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia

Nucleic Acids Res., 2000

Geometric Invariant Core for the CL and CH1 Domains of Immunoglobulin Molecules.

Ognyan Stoyanov, Alexander Kister, Israel M. Gelfand, Casimir A. Kulikowski, Cyrus Chothia

J. Comput. Biol., 2000

Fast assignment of protein structures to sequences using the Intermediate Sequence Library PDB-ISL.

Sarah A. Teichmann, Cyrus Chothia, George M. Church, Jong-Chan Park

Bioinform., 2000

RSDB: representative protein sequence databases have high information content.

Jong-Chan Park, Liisa Holm, Andreas Heger, Cyrus Chothia

Bioinform., 2000

Sequence search algorithm assessment and testing toolkit (SAT).

Jong-Chan Park, Liisa Holm, Cyrus Chothia

Bioinform., 2000

PDB_ISL: an intermediate sequence library for protein structure assignment.

Sarah A. Teichmann, Cyrus Chothia, George M. Church, Jong-Chan Park

Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, 2000

1999

SCOP: a Structural Classification of Proteins database.

Tim J. P. Hubbard, Bart Ailey, Steven E. Brenner, Alexey G. Murzin, Cyrus Chothia

Nucleic Acids Res., 1999

Genome sequences and protein structures.

Sarah A. Teichmann, Jong-Chan Park, Cyrus Chothia

Proceedings of the Third Annual International Conference on Research in Computational Molecular Biology, 1999

1997

SCOP: a structural classification of proteins database.

Tim J. P. Hubbard, Alexey G. Murzin, Steven E. Brenner, Cyrus Chothia

Nucleic Acids Res., 1997