David T. Jones

Orcid: 0000-0001-8626-3765

Affiliations:
  • University College London, UK


According to our database1, David T. Jones authored at least 66 papers between 1992 and 2024.

Collaborative distances:

Timeline

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Bibliography

2024
Exploring transfer learning for pathological speech feature prediction: Impact of layer selection.
CoRR, 2024

2023
SparCA: Sparse Compressed Agglomeration for Feature Extraction and Dimensionality Reduction.
CoRR, 2023

Not All Errors Are Created Equal: Evaluating The Impact of Model and Speaker Factors on ASR Outcomes in Clinical Populations.
Proceedings of the IEEE Automatic Speech Recognition and Understanding Workshop, 2023

Detecting Speech Abnormalities With a Perceiver-Based Sequence Classifier that Leverages a Universal Speech Model.
Proceedings of the IEEE Automatic Speech Recognition and Understanding Workshop, 2023

2022
Deep learning identifies brain structures that predict cognition and explain heterogeneity in cognitive aging.
NeuroImage, 2022

Risk of re-identification for shared clinical speech recordings.
CoRR, 2022

2021
Relationships between β-amyloid and tau in an elderly population: An accelerated failure time modelww.
NeuroImage, 2021

CSF dynamics as a predictor of cognitive progression.
NeuroImage, 2021

Associations of quantitative susceptibility mapping with Alzheimer's disease clinical and imaging markers.
NeuroImage, 2021

Increasing the accuracy of single sequence prediction methods using a deep semi-supervised learning framework.
Bioinform., 2021

Reinforcement Learning based Disease Progression Model for Alzheimer's Disease.
Proceedings of the Advances in Neural Information Processing Systems 34: Annual Conference on Neural Information Processing Systems 2021, 2021

Domain-guided Self-supervision of EEG Data Improves Downstream Classification Performance and Generalizability.
Proceedings of the Machine Learning for Health, 2021

2020
Improved protein structure prediction using potentials from deep learning.
Nat., 2020

Protein function prediction is improved by creating synthetic feature samples with generative adversarial networks.
Nat. Mach. Intell., 2020

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.
Nucleic Acids Res., 2020

2019
The PSIPRED Protein Analysis Workbench: 20 years on.
Nucleic Acids Res., 2019

2018
High precision in protein contact prediction using fully convolutional neural networks and minimal sequence features.
Bioinform., 2018

2017
Analysis of temporal transcription expression profiles reveal links between protein function and developmental stages of Drosophila melanogaster.
PLoS Comput. Biol., 2017

EigenTHREADER: analogous protein fold recognition by efficient contact map threading.
Bioinform., 2017

2015
Language networks associated with computerized semantic indices.
NeuroImage, 2015

Genome3D: exploiting structure to help users understand their sequences.
Nucleic Acids Res., 2015

MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins.
Bioinform., 2015

DISOPRED3: precise disordered region predictions with annotated protein-binding activity.
Bioinform., 2015

2014
Opportunities and limitations in applying coevolution-derived contacts to protein structure prediction.
Bio Algorithms Med Syst., 2014

2013
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.
Nucleic Acids Res., 2013

Scalable web services for the PSIPRED Protein Analysis Workbench.
Nucleic Acids Res., 2013

Membrane protein orientation and refinement using a knowledge-based statistical potential.
BMC Bioinform., 2013

Protein function prediction by massive integration of evolutionary analyses and multiple data sources.
BMC Bioinform., 2013

2012
Detecting pore-lining regions in transmembrane protein sequences.
BMC Bioinform., 2012

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments.
Bioinform., 2012

2011
Extending CATH: increasing coverage of the protein structure universe and linking structure with function.
Nucleic Acids Res., 2011

The MEMPACK alpha-helical transmembrane protein structure prediction server.
Bioinform., 2011

2010
Predicting Transmembrane Helix Packing Arrangements using Residue Contacts and a Force-Directed Algorithm.
PLoS Comput. Biol., 2010

Protein annotation and modelling servers at University College London.
Nucleic Acids Res., 2010

Computational Resources for the Prediction and Analysis of Native Disorder in Proteins.
Proceedings of the Proteome Bioinformatics, 2010

2009
Transmembrane protein topology prediction using support vector machines.
BMC Bioinform., 2009

Prediction of hot spot residues at protein-protein interfaces by combining machine learning and energy-based methods.
BMC Bioinform., 2009

Improving classification in protein structure databases using text mining.
BMC Bioinform., 2009

pGenTHREADER and pDomTHREADER: new methods for improved protein fold recognition and superfamily discrimination.
Bioinform., 2009

2008
ISPIDER Central: an integrated database web-server for proteomics.
Nucleic Acids Res., 2008

FFPred: an integrated feature-based function prediction server for vertebrate proteomes.
Nucleic Acids Res., 2008

Using neural networks and evolutionary information in decoy discrimination for protein tertiary structure prediction.
BMC Bioinform., 2008

2007
Inferring Function Using Patterns of Native Disorder in Proteins.
PLoS Comput. Biol., 2007

Improving the accuracy of transmembrane protein topology prediction using evolutionary information.
Bioinform., 2007

2006
High throughput profile-profile based fold recognition for the entire human proteome.
BMC Bioinform., 2006

Docking protein domains in contact space.
BMC Bioinform., 2006

<i>springScape</i>: visualisation of microarray and contextual bioinformatic data using spring embedding and an "information landscape".
Proceedings of the Proceedings 14th International Conference on Intelligent Systems for Molecular Biology 2006, 2006

Invited Talk: Docking Protein Domains Using a Contact Map Representation.
Proceedings of the German Conference on Bioinformatics GCB 2006, 19.09. 2006, 2006

2005
Protein structure prediction servers at University College London.
Nucleic Acids Res., 2005

Improving sequence-based fold recognition by using 3D model quality assessment.
Bioinform., 2005

2004
The Genomic Threading Database: a comprehensive resource for structural annotations of the genomes from key organisms.
Nucleic Acids Res., 2004

The DISOPRED server for the prediction of protein disorder.
Bioinform., 2004

The Genomic Threading Database.
Bioinform., 2004

BioRAT: extracting biological information from full-length papers.
Bioinform., 2004

Predicting Gene Ontology Annotations from Sequence Data Using Kernel-Based Machine Learning Algorithms.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

Automatic Prediction of Functional Site Regions in Low-Resolution Protein Structures.
Proceedings of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference, 2004

2003
Secondary structure prediction with support vector machines.
Bioinform., 2003

Improvement of the GenTHREADER Method for Genomic Fold Recognition.
Bioinform., 2003

2001
What are the baselines for protein fold recognition?
Bioinform., 2001

Protein Structure Prediction in Genomics.
Briefings Bioinform., 2001

Agent Interaction for Bioinformatics Data Management.
Appl. Artif. Intell., 2001

2000
The PSIPRED protein structure prediction server.
Bioinform., 2000

Applying Agents to Bioinformatics in GeneWeaver.
Proceedings of the Cooperative Information Agents IV, 2000

1998
PASSML: combining evolutionary inference and protein secondary structure prediction.
Bioinform., 1998

1993
Protein fold recognition.
J. Comput. Aided Mol. Des., 1993

1992
The rapid generation of mutation data matrices from protein sequences.
Comput. Appl. Biosci., 1992


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