Ian Sillitoe

Orcid: 0000-0003-1091-9144

According to our database1, Ian Sillitoe authored at least 43 papers between 2000 and 2023.

Collaborative distances:

Timeline

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Bibliography

2023
InterPro in 2022.
Nucleic Acids Res., January, 2023

CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models.
Bioinform., January, 2023

2022
Dissecting peripheral protein-membrane interfaces.
PLoS Comput. Biol., December, 2022

Assigning protein function from domain-function associations using DomFun.
BMC Bioinform., 2022

Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs.
Briefings Bioinform., 2022

2021
CATH: increased structural coverage of functional space.
Nucleic Acids Res., 2021

The InterPro protein families and domains database: 20 years on.
Nucleic Acids Res., 2021

2020
PDBe-KB: a community-driven resource for structural and functional annotations.
Nucleic Acids Res., 2020

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.
Nucleic Acids Res., 2020

The ELIXIR Core Data Resources: fundamental infrastructure for the life sciences.
Bioinform., 2020

2019
CATH: expanding the horizons of structure-based functional annotations for genome sequences.
Nucleic Acids Res., 2019

InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Nucleic Acids Res., 2019

cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly.
Bioinform., 2019

Associating Protein Domains with Biological Functions: A Tripartite Network Approach.
Proceedings of the Bioinformatics and Biomedical Engineering, 2019

2018
Gene3D: Extensive prediction of globular domains in proteins.
Nucleic Acids Res., 2018

2017
InterPro in 2017 - beyond protein family and domain annotations.
Nucleic Acids Res., 2017

CATH: an expanded resource to predict protein function through structure and sequence.
Nucleic Acids Res., 2017

2016
FunTree: advances in a resource for exploring and contextualising protein function evolution.
Nucleic Acids Res., 2016

Gene3D: expanding the utility of domain assignments.
Nucleic Acids Res., 2016

MSAViewer: interactive JavaScript visualization of multiple sequence alignments.
Bioinform., 2016

2015
CATH: comprehensive structural and functional annotations for genome sequences.
Nucleic Acids Res., 2015

The InterPro protein families database: the classification resource after 15 years.
Nucleic Acids Res., 2015

Genome3D: exploiting structure to help users understand their sequences.
Nucleic Acids Res., 2015

CATH FunFHMMer web server: protein functional annotations using functional family assignments.
Nucleic Acids Res., 2015

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.
Bioinform., 2015

2014
Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis.
Nucleic Acids Res., 2014

BioJS: an open source standard for biological visualisation - its status in 2014.
F1000Research, 2014

2013
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures.
Nucleic Acids Res., 2013

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.
Nucleic Acids Res., 2013

2012
Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies.
PLoS Comput. Biol., 2012

Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis.
Nucleic Acids Res., 2012

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies.
Nucleic Acids Res., 2012

2011
The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences.
Nucleic Acids Res., 2011

Extending CATH: increasing coverage of the protein structure universe and linking structure with function.
Nucleic Acids Res., 2011

2009
FLORA: A Novel Method to Predict Protein Function from Structure in Diverse Superfamilies.
PLoS Comput. Biol., 2009

The CATH classification revisited - architectures reviewed and new ways to characterize structural divergence in superfamilies.
Nucleic Acids Res., 2009

2007
The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution.
Nucleic Acids Res., 2007

2005
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.
Nucleic Acids Res., 2005

2004
A structural perspective on genome evolution.
Proceedings of the Eighth Annual International Conference on Computational Molecular Biology, 2004

2003
The CATH database: an extended protein family resource for structural and functional genomics.
Nucleic Acids Res., 2003

Recognizing the fold of a protein structure.
Bioinform., 2003

2001
A rapid classification protocol for the CATH Domain Database to support structural genomics.
Nucleic Acids Res., 2001

2000
Assigning genomic sequences to CATH.
Nucleic Acids Res., 2000


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