Daniel W. A. Buchan

According to our database, Daniel W. A. Buchan authored at least 13 papers between 2001 and 2025.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2025

Foldclass and Merizo-search: scalable structural similarity search for single- and multi-domain proteins using geometric learning.

Shaun M. Kandathil, Andy M. Lau, Daniel W. A. Buchan, David T. Jones

Bioinform., 2025

Less is more: improving cell-type identification with augmentation-free single-cell RNA-Seq contrastive learning.

Ibrahim Alsaggaf, Daniel W. A. Buchan, Cen Wan

Bioinform., 2025

2020

Genome3D: integrating a collaborative data pipeline to expand the depth and breadth of consensus protein structure annotation.

Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Robert D. Finn, Julian Gough, David T. Jones, Lawrence A. Kelley, Typhaine Paysan-Lafosse, Su Datt Lam, Alexey G. Murzin, Arun Prasad Pandurangan, Gustavo A. Salazar, Marcin J. Skwark, Michael J. E. Sternberg, Sameer Velankar, Christine A. Orengo

Nucleic Acids Res., 2020

2019

The PSIPRED Protein Analysis Workbench: 20 years on.

Daniel W. A. Buchan, David T. Jones

Nucleic Acids Res., 2019

2017

EigenTHREADER: analogous protein fold recognition by efficient contact map threading.

Daniel W. A. Buchan, David T. Jones

Bioinform., 2017

2015

Genome3D: exploiting structure to help users understand their sequences.

Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Domenico Cozzetto, Jose M. Dana, Ioannis Filippis, Julian Gough, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Jaina Mistry, Alexey G. Murzin, Bernardo Ochoa-Montaño, Matt E. Oates, Marco Punta, Owen J. L. Rackham, Jonathan Stahlhacke, Michael J. E. Sternberg, Sameer Velankar, Christine A. Orengo

Nucleic Acids Res., 2015

2013

Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains.

Tony E. Lewis, Ian Sillitoe, Antonina Andreeva, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Alison L. Cuff, Jose M. Dana, Ioannis Filippis, Julian Gough, Sarah Hunter, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt, Federico Minneci, Alex L. Mitchell, Alexey G. Murzin, Bernardo Ochoa-Montaño, Owen J. L. Rackham, James Smith, Michael J. E. Sternberg, Sameer Velankar, Corin Yeats, Christine A. Orengo

Nucleic Acids Res., 2013

Scalable web services for the PSIPRED Protein Analysis Workbench.

Daniel W. A. Buchan, Federico Minneci, Tim C. O. Nugent, Kevin Bryson, David T. Jones

Nucleic Acids Res., 2013

Protein function prediction by massive integration of evolutionary analyses and multiple data sources.

Domenico Cozzetto, Daniel W. A. Buchan, Kevin Bryson, David T. Jones

BMC Bioinform., 2013

2012

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments.

David T. Jones, Daniel W. A. Buchan, Domenico Cozzetto, Massimiliano Pontil

Bioinform., 2012

2010

Protein annotation and modelling servers at University College London.

Daniel W. A. Buchan, S. M. Ward, Anna E. Lobley, Timothy Nugent, Kevin Bryson, David T. Jones

Nucleic Acids Res., 2010

2003

Gene3D: structural assignments for the biologist and bioinformaticist alike.

Daniel W. A. Buchan, Stuart C. G. Rison, James E. Bray, David A. Lee, Frances M. G. Pearl, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2003

2001

A rapid classification protocol for the CATH Domain Database to support structural genomics.

Frances M. G. Pearl, Nigel J. Martin, James E. Bray, Daniel W. A. Buchan, Andrew P. Harrison, David A. Lee, Gabrielle A. Reeves, Adrian J. Shepherd, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2001