Doheon Lee
Orcid: 0000-0002-4650-3805
According to our database1,
Doheon Lee
authored at least 151 papers
between 1993 and 2023.
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Bibliography
2023
Reverse tracking from drug-induced transcriptomes through multilayer molecular networks reveals hidden drug targets.
Comput. Biol. Medicine, May, 2023
Large-scale prediction of adverse drug reactions-related proteins with network embedding.
Bioinform., January, 2023
Identifying prognostic subgroups of luminal-A breast cancer using deep autoencoders and gene expressions.
PLoS Comput. Biol., 2023
2022
Supplementary data for the manuscript entitled "Reliable data collection in participatory trials to assess digital healthcare applications".
Dataset, May, 2022
Machine-Learned Light-Field Camera that Reads Facial Expression from High-Contrast and Illumination Invariant 3D Facial Images.
Adv. Intell. Syst., 2022
SNEP-DB: An integrated database to associate genomic and pathological aspects of psychiatric disorders.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
2021
BMC Bioinform., 2021
2020
Literature mining for context-specific molecular relations using multimodal representations (COMMODAR).
BMC Bioinform., 2020
Reliable Data Collection in Participatory Trials to Assess Digital Healthcare Applications.
IEEE Access, 2020
Identifying prognostic subgroups of luminal-A breast cancer using a deep autoencoder.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
2019
Concept embedding to measure semantic relatedness for biomedical information ontologies.
J. Biomed. Informatics, 2019
CoRR, 2019
CODA-ML: context-specific biological knowledge representation for systemic physiology analysis.
BMC Bioinform., 2019
Deconvoluting essential gene signatures for cancer growth from genomic expression in compound-treated cells.
Bioinform., 2019
Proceedings of the International Conference on Robotics and Automation, 2019
DTMBIO 2019: The Thirteenth International Workshop on Data and Text Mining in Biomedical Informatics.
Proceedings of the 28th ACM International Conference on Information and Knowledge Management, 2019
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
2018
Predicting the Absorption Potential of Chemical Compounds Through a Deep Learning Approach.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018
Frontiers Comput. Sci., 2018
Annotating activation/inhibition relationships to protein-protein interactions using gene ontology relations.
BMC Syst. Biol., 2018
Petri net-based prediction of therapeutic targets that recover abnormally phosphorylated proteins in muscle atrophy.
BMC Syst. Biol., 2018
A systematic approach to identify therapeutic effects of natural products based on human metabolite information.
BMC Bioinform., 2018
Identification of common coexpression modules based on quantitative network comparison.
BMC Bioinform., 2018
IEEE Access, 2018
CORUS: Blockchain-Based Trustworthy Evaluation System for Efficacy of Healthcare Remedies.
Proceedings of the 2018 IEEE International Conference on Cloud Computing Technology and Science, 2018
2017
Eng. Appl. Artif. Intell., 2017
Coupling effects on turning points of infectious diseases epidemics in scale-free networks.
BMC Bioinform., 2017
Proceedings of the 2017 IEEE International Congress on Big Data, 2017
2016
Inferring new drug indications using the complementarity between clinical disease signatures and drug effects.
J. Biomed. Informatics, 2016
A bioinformatics system for searching Co-Occurrence based on Co-Operational Formation with Advanced Method (COCOFAM).
CoRR, 2016
BMC Syst. Biol., 2016
Prediction of compound-target interactions of natural products using large-scale drug and protein information.
BMC Bioinform., 2016
BMC Bioinform., 2016
BMC Bioinform., 2016
DTMBIO 2016: The Tenth International Workshop on Data and Text Mining in Biomedical Informatics.
Proceedings of the 25th ACM International Conference on Information and Knowledge Management, 2016
2015
BMC Medical Informatics Decis. Mak., 2015
BMC Medical Informatics Decis. Mak., 2015
SoloDel: a probabilistic model for detecting low-frequent somatic deletions from unmatched sequencing data.
Bioinform., 2015
Development of a Framework for Constructing a Virtual Physiological Human with the Integration of COntext Specific Directed Associations (CODA).
Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015
Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015
DTMBIO 2015: International Workshop on Data and Text Mining in Biomedical Informatics.
Proceedings of the 24th ACM International Conference on Information and Knowledge Management, 2015
Identifying Potential Bioactive Compounds of Natural Products by Combining ADMET Prediction Methods.
Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015
Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015
Building Text-mining Framework for Gene-Phenotype Relation Extraction using Deep Leaning.
Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015
Cell line specific method based on functional modules for drug sensitivity prediction.
Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015
2014
Proceedings of the 2014 Joint 7th International Conference on Soft Computing and Intelligent Systems (SCIS) and 15th International Symposium on Advanced Intelligent Systems (ISIS), 2014
Systematic Identification of Context-dependent Conflicting Information in Biological Pathways.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014
Discriminatory Analysis of Alzheimer's Disease through pathway Activity inference in the Resting-State brain.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014
Mining Context-Specific Rules from the Literature for Virtual Human Model Simulation.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014
Construction of Multi-level Networks Incorporating Molecule, Cell, Organ and Phenotype Properties for Drug-induced Phenotype Prediction.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014
Integrative Database for Exploring Compound Combinations of Natural Products for Medical Effects.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014
DTMBIO 2014: International Workshop on Data and Text Mining in Biomedical Informatics.
Proceedings of the 23rd ACM International Conference on Conference on Information and Knowledge Management, 2014
2013
BMC Medical Informatics Decis. Mak., 2013
Generation and application of drug indication inference models using typed network motif comparison analysis.
BMC Medical Informatics Decis. Mak., 2013
Inferring disease association using clinical factors in a combinatorial manner and their use in drug repositioning.
Bioinform., 2013
A comparison between continuous categorical emotion responses and Stimulus loudness parameters.
Proceedings of the 4th International Conference on Information, 2013
Proceedings of the Proceeding of the 7rd International Workshop on Data and Text Mining in Bioinformatics, 2013
Proceedings of the Proceeding of the 7rd International Workshop on Data and Text Mining in Bioinformatics, 2013
DTMBIO 2013: international workshop on data and text mining in biomedical informatics.
Proceedings of the 22nd ACM International Conference on Information and Knowledge Management, 2013
2012
Discovering context-specific relationships from biological literature by using multi-level context terms.
BMC Medical Informatics Decis. Mak., 2012
Electronic Medical Records privacy preservation through k-anonymity clustering method.
Proceedings of the 6th International Conference on Soft Computing and Intelligent Systems (SCIS), 2012
DTMBIO 2012: international workshop on data and text mining in biomedical informatics.
Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012
Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics, 2012
Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics, 2012
TNMCA: generation and application of network motif based inference models for drug repositioning.
Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics, 2012
2011
Predicting disease phenotypes based on the molecular networks with Condition-Responsive Correlation.
Int. J. Data Min. Bioinform., 2011
BMC Syst. Biol., 2011
Exploring molecular links between lymph node invasion and cancer prognosis in human breast cancer.
BMC Syst. Biol., 2011
Building the process-drug-side effect network to discover the relationship between biological Processes and side effects.
BMC Bioinform., 2011
BMC Bioinform., 2011
DTMBIO 2011: international workshop on data and textmining in biomedical informatics.
Proceedings of the 20th ACM Conference on Information and Knowledge Management, 2011
2010
Prediction of Extracellular Matrix Proteins Based on Distinctive Sequence and Domain Characteristics.
J. Comput. Biol., 2010
Genome-wide DNA-binding specificity of PIL5, an Arabidopsis basic Helix-Loop-Helix (bHLH) transcription factor.
Int. J. Data Min. Bioinform., 2010
Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes.
BMC Syst. Biol., 2010
Multivariate classification of urine metabolome profiles for breast cancer diagnosis.
BMC Bioinform., 2010
MKEM: a Multi-level Knowledge Emergence Model for mining undiscovered public knowledge.
BMC Bioinform., 2010
PSExplorer: whole parameter space exploration for molecular signaling pathway dynamics.
Bioinform., 2010
Inference of combinatorial Boolean rules of synergistic gene sets from cancer microarray datasets.
Bioinform., 2010
<i>RBSDesigner</i>: software for designing synthetic ribosome binding sites that yields a desired level of protein expression.
Bioinform., 2010
Proceedings of the 19th ACM Conference on Information and Knowledge Management, 2010
A new perspective of integrative genome-wide association analysis considering trans eSNP effect.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010
2009
Comparative analysis of the JAK/STAT signaling through erythropoietin receptor and thrombopoietin receptor using a systems approach.
BMC Bioinform., 2009
A method to improve protein subcellular localization prediction by integrating various biological data sources.
BMC Bioinform., 2009
BMC Bioinform., 2009
Mining metastasis related genes by primary-secondary tumor comparisons from large-scale databases.
BMC Bioinform., 2009
Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification.
Bioinform., 2009
Proceedings of the Proceeding of the 3rd International Workshop on Data and Text Mining in Bioinformatics, 2009
A large-scale gene network inference system for systems biology on supercomputing resources.
Proceedings of the Proceeding of the 3rd International Workshop on Data and Text Mining in Bioinformatics, 2009
Disease Classification Based on the Activities of Interacting Molecular Modules with Condition-Responsive Correlation.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009
2008
PLoS Comput. Biol., 2008
Nucleic Acids Res., 2008
DAhunter: a web-based server that identifies homologous proteins by comparing domain architecture.
Nucleic Acids Res., 2008
Proceedings of the Artificial Immune Systems, 7th International Conference, 2008
Identification of temporal association rules from time-series microarray data set: temporal association rules.
Proceedings of the Proceeding of the 2nd International Workshop on Data and Text Mining in Bioinformatics, 2008
Mining metastasis related genes by primary-secondary tumor comparisons from large-scale database.
Proceedings of the Proceeding of the 2nd International Workshop on Data and Text Mining in Bioinformatics, 2008
Genome-Wide DNA-Binding Specificity of PIL5, a Arabidopsis Basic Helix-Loop-Helix (bHLH) Transcription Factor.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008
2007
Nucleic Acids Res., 2007
Patome: a database server for biological sequence annotation and analysis in issued patents and published patent applications.
Nucleic Acids Res., 2007
Enabling Large-Scale Bayesian Network Learning by Preserving Intercluster Directionality.
IEICE Trans. Inf. Syst., 2007
BMC Bioinform., 2007
H-CORE: Enabling genome-scale Bayesian analysis of biological systems without prior knowledge.
Biosyst., 2007
Bioinform., 2007
Proceedings of the Artificial Immune Systems, 6th International Conference, 2007
Proceedings of the Artificial Immune Systems, 6th International Conference, 2007
Intelligent Navigation of Autonomous Underwater Vehicles for Cage Aquafarm Surveillance.
Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies 2007, 2007
Inferring Gene Regulatory Networks from Microarray Time Series Data Using Transfer Entropy.
Proceedings of the 20th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2007), 2007
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
2005
Pattern Recognit., 2005
Pattern Recognit., 2005
Evaluation of the performance of clustering algorithms in kernel-induced feature space.
Pattern Recognit., 2005
Improving Classification Accuracy of Decision Trees for Different Abstraction Levels of Data.
Int. J. Data Warehous. Min., 2005
J. Adv. Comput. Intell. Intell. Informatics, 2005
IEICE Trans. Inf. Syst., 2005
Architecture of basic building blocks in protein and domain structural interaction networks.
Bioinform., 2005
Modularized learning of genetic interaction networks from biological annotations and mRNA expression data.
Bioinform., 2005
Detecting clusters of different geometrical shapes in microarray gene expression data.
Bioinform., 2005
Proceedings of the Neural Nets, 16th Italian Workshop on Neural Nets, 2005
Voting Fuzzy k-NN to Predict Protein Subcellular Localization from Normalized Amino Acid Pair Compositions.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2005
Fuzzy Continuous Petri Net-Based Approach for Modeling Helper T Cell Differentiation.
Proceedings of the Artificial Immune Systems: 4th International Conference, 2005
Proceedings of the Artificial Immune Systems: 4th International Conference, 2005
2004
Pattern Recognit. Lett., 2004
Pattern Recognit. Lett., 2004
Pattern Recognit., 2004
A cluster validation index for GK cluster analysis based on relative degree of sharing.
Inf. Sci., 2004
Int. J. Uncertain. Fuzziness Knowl. Based Syst., 2004
Proceedings of the Artificial Immune Systems, Third International Conference, 2004
2003
Pattern Recognit. Lett., 2003
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2003
Proceedings of the 3rd IEEE International Conference on Data Mining (ICDM 2003), 2003
Immune-Based Framework for Exploratory Bio-information Retrieval from the Semantic Web.
Proceedings of the Artificial Immune Systems, Second International Conference, 2003
Proceedings of the Artificial Immune Systems, Second International Conference, 2003
2001
Proceedings of the Intelligent Agents: Specification, 2001
Proceedings of the Cooperative Information Agents V, 5th International Workshop, 2001
1997
IEEE Trans. Syst. Man Cybern. Part B, 1997
1994
Proceedings of the Tenth International Conference on Data Engineering, 1994
1993
Microprocess. Microprogramming, 1993
Accommodating subjective vagueness through a fuzzy extension to the relational data model.
Inf. Syst., 1993
A Fuzzification of the Relational Data Model.
Proceedings of the 3rd International Conference on Database Systems for Advanced Applications (DASFAA), 1993
Proceedings of the CIKM 93, 1993