Doheon Lee

Orcid: 0000-0002-4650-3805

According to our database1, Doheon Lee authored at least 152 papers between 1993 and 2024.

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Bibliography

2024
Community cohesion looseness in gene networks reveals individualized drug targets and resistance.
Briefings Bioinform., 2024

2023
Reverse tracking from drug-induced transcriptomes through multilayer molecular networks reveals hidden drug targets.
Comput. Biol. Medicine, May, 2023

Large-scale prediction of adverse drug reactions-related proteins with network embedding.
Bioinform., January, 2023

Identifying prognostic subgroups of luminal-A breast cancer using deep autoencoders and gene expressions.
PLoS Comput. Biol., 2023

2022
Supplementary data for the manuscript entitled "Reliable data collection in participatory trials to assess digital healthcare applications".
Dataset, May, 2022

Machine-Learned Light-Field Camera that Reads Facial Expression from High-Contrast and Illumination Invariant 3D Facial Images.
Adv. Intell. Syst., 2022

SNEP-DB: An integrated database to associate genomic and pathological aspects of psychiatric disorders.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021
Context-aware multi-token concept recognition of biological entities.
BMC Bioinform., 2021

2020
Literature mining for context-specific molecular relations using multimodal representations (COMMODAR).
BMC Bioinform., 2020

Reliable Data Collection in Participatory Trials to Assess Digital Healthcare Applications.
IEEE Access, 2020

Identifying prognostic subgroups of luminal-A breast cancer using a deep autoencoder.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Accelerating Drug Discovery with an AI-Based Virtual Human System CODA.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

2019
Concept embedding to measure semantic relatedness for biomedical information ontologies.
J. Biomed. Informatics, 2019

Robust Sound Source Localization considering Similarity of Back-Propagation Signals.
CoRR, 2019

CODA-ML: context-specific biological knowledge representation for systemic physiology analysis.
BMC Bioinform., 2019

Deconvoluting essential gene signatures for cancer growth from genomic expression in compound-treated cells.
Bioinform., 2019

Diffraction-Aware Sound Localization for a Non-Line-of-Sight Source.
Proceedings of the International Conference on Robotics and Automation, 2019

DTMBIO 2019: The Thirteenth International Workshop on Data and Text Mining in Biomedical Informatics.
Proceedings of the 28th ACM International Conference on Information and Knowledge Management, 2019

Visualizing multifunctional PPI network with Gene Ontology annotation.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

2018
Predicting the Absorption Potential of Chemical Compounds Through a Deep Learning Approach.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

CONET: a virtual human system-centered platform for drug discovery.
Frontiers Comput. Sci., 2018

Annotating activation/inhibition relationships to protein-protein interactions using gene ontology relations.
BMC Syst. Biol., 2018

Petri net-based prediction of therapeutic targets that recover abnormally phosphorylated proteins in muscle atrophy.
BMC Syst. Biol., 2018

A systematic approach to identify therapeutic effects of natural products based on human metabolite information.
BMC Bioinform., 2018

Identification of common coexpression modules based on quantitative network comparison.
BMC Bioinform., 2018

A Data-Driven Approach for Identifying Medicinal Combinations of Natural Products.
IEEE Access, 2018

CORUS: Blockchain-Based Trustworthy Evaluation System for Efficacy of Healthcare Remedies.
Proceedings of the 2018 IEEE International Conference on Cloud Computing Technology and Science, 2018

2017
Recent advances in immunological inspired computation.
Eng. Appl. Artif. Intell., 2017

Coupling effects on turning points of infectious diseases epidemics in scale-free networks.
BMC Bioinform., 2017

Drowsy Driving Warning System Based on GS1 Standards with Machine Learning.
Proceedings of the 2017 IEEE International Congress on Big Data, 2017

2016
Inferring new drug indications using the complementarity between clinical disease signatures and drug effects.
J. Biomed. Informatics, 2016

A bioinformatics system for searching Co-Occurrence based on Co-Operational Formation with Advanced Method (COCOFAM).
CoRR, 2016

Prediction of drugs having opposite effects on disease genes in a directed network.
BMC Syst. Biol., 2016

Prediction of compound-target interactions of natural products using large-scale drug and protein information.
BMC Bioinform., 2016

Context-specific functional module based drug efficacy prediction.
BMC Bioinform., 2016

A corpus for plant-chemical relationships in the biomedical domain.
BMC Bioinform., 2016

DTMBIO 2016: The Tenth International Workshop on Data and Text Mining in Biomedical Informatics.
Proceedings of the 25th ACM International Conference on Information and Knowledge Management, 2016

2015
Context-based resolution of semantic conflicts in biological pathways.
BMC Medical Informatics Decis. Mak., 2015

Inference of brain pathway activities for Alzheimer's disease classification.
BMC Medical Informatics Decis. Mak., 2015

SoloDel: a probabilistic model for detecting low-frequent somatic deletions from unmatched sequencing data.
Bioinform., 2015

Development of a Framework for Constructing a Virtual Physiological Human with the Integration of COntext Specific Directed Associations (CODA).
Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015

What-if Analysis in Biomedical Networks based on Production Rule System.
Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015

DTMBIO 2015: International Workshop on Data and Text Mining in Biomedical Informatics.
Proceedings of the 24th ACM International Conference on Information and Knowledge Management, 2015

Identifying Potential Bioactive Compounds of Natural Products by Combining ADMET Prediction Methods.
Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015

Citizen Organization System for Advanced MEDical research (COSAMED).
Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015

Building Text-mining Framework for Gene-Phenotype Relation Extraction using Deep Leaning.
Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015

Cell line specific method based on functional modules for drug sensitivity prediction.
Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015

2014
Context-specific biological network construction.
Proceedings of the 2014 Joint 7th International Conference on Soft Computing and Intelligent Systems (SCIS) and 15th International Symposium on Advanced Intelligent Systems (ISIS), 2014

Systematic Identification of Context-dependent Conflicting Information in Biological Pathways.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014

Visualization of Zoomable Network for Multi-Compounds and Multi-Targets Analysis.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014

Discriminatory Analysis of Alzheimer's Disease through pathway Activity inference in the Resting-State brain.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014

Mining Context-Specific Rules from the Literature for Virtual Human Model Simulation.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014

Construction of Multi-level Networks Incorporating Molecule, Cell, Organ and Phenotype Properties for Drug-induced Phenotype Prediction.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014

Integrative Database for Exploring Compound Combinations of Natural Products for Medical Effects.
Proceedings of the ACM 8th International Workshop on Data and Text Mining in Bioinformatics, 2014

DTMBIO 2014: International Workshop on Data and Text Mining in Biomedical Informatics.
Proceedings of the 23rd ACM International Conference on Conference on Information and Knowledge Management, 2014

2013
Rule-based multi-scale simulation for drug effect pathway analysis.
BMC Medical Informatics Decis. Mak., 2013

Generation and application of drug indication inference models using typed network motif comparison analysis.
BMC Medical Informatics Decis. Mak., 2013

Inferring disease association using clinical factors in a combinatorial manner and their use in drug repositioning.
Bioinform., 2013

A comparison between continuous categorical emotion responses and Stimulus loudness parameters.
Proceedings of the 4th International Conference on Information, 2013

Pathway-based classification of brain activities for alzheimer's disease analysis.
Proceedings of the Proceeding of the 7rd International Workshop on Data and Text Mining in Bioinformatics, 2013

BSML: bio-synergy modeling language for multi-component and multi-target analysis.
Proceedings of the Proceeding of the 7rd International Workshop on Data and Text Mining in Bioinformatics, 2013

DTMBIO 2013: international workshop on data and text mining in biomedical informatics.
Proceedings of the 22nd ACM International Conference on Information and Knowledge Management, 2013

2012
Discovering context-specific relationships from biological literature by using multi-level context terms.
BMC Medical Informatics Decis. Mak., 2012

Electronic Medical Records privacy preservation through k-anonymity clustering method.
Proceedings of the 6th International Conference on Soft Computing and Intelligent Systems (SCIS), 2012

DTMBIO 2012: international workshop on data and text mining in biomedical informatics.
Proceedings of the 21st ACM International Conference on Information and Knowledge Management, 2012

Session details: Keynote address.
Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics, 2012

Rule-based whole body modeling for analyzing multi-compound effects.
Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics, 2012

TNMCA: generation and application of network motif based inference models for drug repositioning.
Proceedings of the ACM sixth international workshop on Data and text mining in biomedical informatics, 2012

2011
Predicting disease phenotypes based on the molecular networks with Condition-Responsive Correlation.
Int. J. Data Min. Bioinform., 2011

SigCS base: an integrated genetic information resource for human cerebral stroke.
BMC Syst. Biol., 2011

Exploring molecular links between lymph node invasion and cancer prognosis in human breast cancer.
BMC Syst. Biol., 2011

Building the process-drug-side effect network to discover the relationship between biological Processes and side effects.
BMC Bioinform., 2011

Context-dependent transcriptional regulations between signal transduction pathways.
BMC Bioinform., 2011

DTMBIO 2011: international workshop on data and textmining in biomedical informatics.
Proceedings of the 20th ACM Conference on Information and Knowledge Management, 2011

2010
Prediction of Extracellular Matrix Proteins Based on Distinctive Sequence and Domain Characteristics.
J. Comput. Biol., 2010

Genome-wide DNA-binding specificity of PIL5, an Arabidopsis basic Helix-Loop-Helix (bHLH) transcription factor.
Int. J. Data Min. Bioinform., 2010

Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes.
BMC Syst. Biol., 2010

Multivariate classification of urine metabolome profiles for breast cancer diagnosis.
BMC Bioinform., 2010

MKEM: a Multi-level Knowledge Emergence Model for mining undiscovered public knowledge.
BMC Bioinform., 2010

PSExplorer: whole parameter space exploration for molecular signaling pathway dynamics.
Bioinform., 2010

Inference of combinatorial Boolean rules of synergistic gene sets from cancer microarray datasets.
Bioinform., 2010

<i>RBSDesigner</i>: software for designing synthetic ribosome binding sites that yields a desired level of protein expression.
Bioinform., 2010

DTMBIO workshop summary.
Proceedings of the 19th ACM Conference on Information and Knowledge Management, 2010

A new perspective of integrative genome-wide association analysis considering trans eSNP effect.
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009
Special Issue on Artificial Immune Systems.
J. Math. Model. Algorithms, 2009

Comparative analysis of the JAK/STAT signaling through erythropoietin receptor and thrombopoietin receptor using a systems approach.
BMC Bioinform., 2009

A method to improve protein subcellular localization prediction by integrating various biological data sources.
BMC Bioinform., 2009

Identification of temporal association rules from time-series microarray data sets.
BMC Bioinform., 2009

Protein comparison at the domain architecture level.
BMC Bioinform., 2009

Analysis of AML genes in dysregulated molecular networks.
BMC Bioinform., 2009

Mining metastasis related genes by primary-secondary tumor comparisons from large-scale databases.
BMC Bioinform., 2009

Combining tissue transcriptomics and urine metabolomics for breast cancer biomarker identification.
Bioinform., 2009

Mining cancer genes with running-sum statistics.
Proceedings of the Proceeding of the 3rd International Workshop on Data and Text Mining in Bioinformatics, 2009

A large-scale gene network inference system for systems biology on supercomputing resources.
Proceedings of the Proceeding of the 3rd International Workshop on Data and Text Mining in Bioinformatics, 2009

Disease Classification Based on the Activities of Interacting Molecular Modules with Condition-Responsive Correlation.
Proceedings of the 2009 IEEE International Conference on Bioinformatics and Biomedicine, 2009

2008
Inferring Pathway Activity toward Precise Disease Classification.
PLoS Comput. Biol., 2008

AsiDesigner: exon-based siRNA design server considering alternative splicing.
Nucleic Acids Res., 2008

DAhunter: a web-based server that identifies homologous proteins by comparing domain architecture.
Nucleic Acids Res., 2008

AIS-Based Bootstrapping of Bayesian Networks for Identifying Protein Energy Route.
Proceedings of the Artificial Immune Systems, 7th International Conference, 2008

Identification of temporal association rules from time-series microarray data set: temporal association rules.
Proceedings of the Proceeding of the 2nd International Workshop on Data and Text Mining in Bioinformatics, 2008

Mining metastasis related genes by primary-secondary tumor comparisons from large-scale database.
Proceedings of the Proceeding of the 2nd International Workshop on Data and Text Mining in Bioinformatics, 2008

Genome-Wide DNA-Binding Specificity of PIL5, a Arabidopsis Basic Helix-Loop-Helix (bHLH) Transcription Factor.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007
Density-Induced Support Vector Data Description.
IEEE Trans. Neural Networks, 2007

SNP@Ethnos: a database of ethnically variant single-nucleotide polymorphisms.
Nucleic Acids Res., 2007

Patome: a database server for biological sequence annotation and analysis in issued patents and published patent applications.
Nucleic Acids Res., 2007

Enabling Large-Scale Bayesian Network Learning by Preserving Intercluster Directionality.
IEICE Trans. Inf. Syst., 2007

BioCAD: an information fusion platform for bio-network inference and analysis.
BMC Bioinform., 2007

H-CORE: Enabling genome-scale Bayesian analysis of biological systems without prior knowledge.
Biosyst., 2007

Towards clustering of incomplete microarray data without the use of imputation.
Bioinform., 2007

Clonal Selection Algorithms for 6-DOF PID Control of Autonomous Underwater Vehicles.
Proceedings of the Artificial Immune Systems, 6th International Conference, 2007

Automated Blog Design System with a Population-Based Artificial Immune Algorithm.
Proceedings of the Artificial Immune Systems, 6th International Conference, 2007

Intelligent Navigation of Autonomous Underwater Vehicles for Cage Aquafarm Surveillance.
Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies 2007, 2007

Inferring Gene Regulatory Networks from Microarray Time Series Data Using Transfer Entropy.
Proceedings of the 20th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2007), 2007

Stochastic Simulation Model for Patterned Neural Multi-Electrode Arrays.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2005
A kernel-based subtractive clustering method.
Pattern Recognit. Lett., 2005

Improving support vector data description using local density degree.
Pattern Recognit., 2005

Possibilistic support vector machines.
Pattern Recognit., 2005

A <i>k</i>-populations algorithm for clustering categorical data.
Pattern Recognit., 2005

Evaluation of the performance of clustering algorithms in kernel-induced feature space.
Pattern Recognit., 2005

Improving Classification Accuracy of Decision Trees for Different Abstraction Levels of Data.
Int. J. Data Warehous. Min., 2005

Extraction of Developmentally Important Genes from Microarray Data.
J. Adv. Comput. Intell. Intell. Informatics, 2005

Assessing the Quality of Fuzzy Partitions Using Relative Intersection.
IEICE Trans. Inf. Syst., 2005

Architecture of basic building blocks in protein and domain structural interaction networks.
Bioinform., 2005

Modularized learning of genetic interaction networks from biological annotations and mRNA expression data.
Bioinform., 2005

Detecting clusters of different geometrical shapes in microarray gene expression data.
Bioinform., 2005

Fuzzy Continuous Petri Net-Based Approach for Modeling Immune Systems.
Proceedings of the Neural Nets, 16th Italian Workshop on Neural Nets, 2005

Voting Fuzzy k-NN to Predict Protein Subcellular Localization from Normalized Amino Acid Pair Compositions.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2005

Fuzzy Continuous Petri Net-Based Approach for Modeling Helper T Cell Differentiation.
Proceedings of the Artificial Immune Systems: 4th International Conference, 2005

Mathematical Modeling of Immune Suppression.
Proceedings of the Artificial Immune Systems: 4th International Conference, 2005

2004
Fuzzy branching temporal logic.
IEEE Trans. Syst. Man Cybern. Part B, 2004

Fuzzy clustering of categorical data using fuzzy centroids.
Pattern Recognit. Lett., 2004

A novel initialization scheme for the fuzzy c-means algorithm for color clustering.
Pattern Recognit. Lett., 2004

On cluster validity index for estimation of the optimal number of fuzzy clusters.
Pattern Recognit., 2004

Ranking the sequences of fuzzy values.
Inf. Sci., 2004

A cluster validation index for GK cluster analysis based on relative degree of sharing.
Inf. Sci., 2004

Comparison Of Type-2 Fuzzy Values With Satisfaction Function.
Int. J. Uncertain. Fuzziness Knowl. Based Syst., 2004

Regression trees for regulatory element identification.
Bioinform., 2004

Integration of Immune Models Using Petri Nets.
Proceedings of the Artificial Immune Systems, Third International Conference, 2004

2003
Fuzzy cluster validation index based on inter-cluster proximity.
Pattern Recognit. Lett., 2003

A Taxonomy of Dirty Data.
Data Min. Knowl. Discov., 2003

Learning Rules to Extract Protein Interactions from Biomedical Text.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2003

Regulatory Element Discovery Using Tree-structured Models.
Proceedings of the 3rd IEEE International Conference on Data Mining (ICDM 2003), 2003

Immune-Based Framework for Exploratory Bio-information Retrieval from the Semantic Web.
Proceedings of the Artificial Immune Systems, Second International Conference, 2003

Complementary Dual Detectors for Effective Classification.
Proceedings of the Artificial Immune Systems, Second International Conference, 2003

2001
Scalable Workflow System Model Based on Mobile Agents.
Proceedings of the Intelligent Agents: Specification, 2001

Decision Trees for Multiple Abstraction Levels of Data.
Proceedings of the Cooperative Information Agents V, 5th International Workshop, 2001

1997
Database summarization using fuzzy ISA hierarchies.
IEEE Trans. Syst. Man Cybern. Part B, 1997

1994
Discovering Database Summaries through Refinements of Fuzzy Hypotheses.
Proceedings of the Tenth International Conference on Data Engineering, 1994

1993
Extending semantics of relational operators for vague queries.
Microprocess. Microprogramming, 1993

Accommodating subjective vagueness through a fuzzy extension to the relational data model.
Inf. Syst., 1993

A Fuzzification of the Relational Data Model.
Proceedings of the 3rd International Conference on Database Systems for Advanced Applications (DASFAA), 1993

A Hypothesis Refinement Method for Summary Discovery in Databases.
Proceedings of the CIKM 93, 1993


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