Marek Ostaszewski

According to our database, Marek Ostaszewski authored at least 25 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

BioKC: a collaborative platform for curation and annotation of molecular interactions.

Carlos Vega, Marek Ostaszewski, Valentin Grouès, Reinhard Schneider, Venkata P. Satagopam

Database J. Biol. Databases Curation, January, 2024

2023

A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance.

Alexander Mazein, Marcio Luis Acencio, Irina Balaur, Adrien Rougny, Danielle Welter, Anna Niarakis, Diana Ramirez Ardila, Ugur Dogrusoz, Piotr Gawron, Venkata P. Satagopam, Wei Gu, Andreas Kremer, Reinhard Schneider, Marek Ostaszewski

Frontiers Bioinform., May, 2023

Applications of Boolean modeling to study the dynamics of a complex disease and therapeutics responses.

Ahmed Abdelmonem Hemedan, Reinhard Schneider, Marek Ostaszewski

Frontiers Bioinform., May, 2023

Visualization of automatically combined disease maps and pathway diagrams for rare diseases.

Piotr Gawron, David Hoksza, Janet Piñero, María Peña-Chilet, Marina Esteban-Medina, Jose Luis Fernandez-Rueda, Vincenza Colonna, Ewa Smula, Laurent Heirendt, François Ancien, Valentin Grouès, Venkata P. Satagopam, Reinhard Schneider, Joaquín Dopazo, Laura I. Furlong, Marek Ostaszewski

Frontiers Bioinform., May, 2023

2021

Machine Learning to Support the Presentation of Complex Pathway Graphs.

Sune S. Nielsen, Marek Ostaszewski, Fintan McGee, David Hoksza, Simone Zorzan

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Mechanistic modeling of the SARS-CoV-2 disease map.

Kinza Rian, Marina Esteban-Medina, Marta R. Hidalgo, Cankut Çubuk, Matias M. Falco, Carlos Loucera, Devrim Gunyel, Marek Ostaszewski, María Peña-Chilet, Joaquín Dopazo

BioData Min., 2021

Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop.

Anna Niarakis, Martin Kuiper, Marek Ostaszewski, Rahuman S. Malik-Sheriff, Cristina Casals-Casas, Denis Thieffry, Tom C. Freeman, Paul D. Thomas, Vasundra Touré, Vincent Noël, Gautier Stoll, Julio Saez-Rodriguez, Aurélien Naldi, Eugenia Oshurko, Ioannis Xenarios, Sylvain Soliman, Claudine Chaouiya, Tomás Helikar, Laurence Calzone

Briefings Bioinform., 2021

Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling.

Alexander Mazein, Adrien Rougny, Jonathan R. Karr, Julio Saez-Rodriguez, Marek Ostaszewski, Reinhard Schneider

Briefings Bioinform., 2021

2020

RA-map: building a state-of-the-art interactive knowledge base for rheumatoid arthritis.

Vidisha Singh, George D. Kalliolias, Marek Ostaszewski, Maëva Veyssiere, Eleftherios Pilalis, Piotr Gawron, Alexander Mazein, Eric Bonnet, Elisabeth Petit-Teixeira, Anna Niarakis

Database J. Biol. Databases Curation, 2020

Closing the gap between formats for storing layout information in systems biology.

David Hoksza, Piotr Gawron, Marek Ostaszewski, Jan Hasenauer, Reinhard Schneider

Briefings Bioinform., 2020

2019

MINERVA API and plugins: opening molecular network analysis and visualization to the community.

David Hoksza, Piotr Gawron, Marek Ostaszewski, Ewa Smula, Reinhard Schneider

Bioinform., 2019

Community-driven roadmap for integrated disease maps.

Marek Ostaszewski, Stephan Gebel, Inna Kuperstein, Alexander Mazein, Andrei Yu. Zinovyev, Ugur Dogrusoz, Jan Hasenauer, Ronan M. T. Fleming, Nicolas Le Novère, Piotr Gawron, Thomas S. Ligon, Anna Niarakis, David P. Nickerson, Daniel Weindl, Rudi Balling, Emmanuel Barillot, Charles Auffray, Reinhard Schneider

Briefings Bioinform., 2019

2018

Clustering approaches for visual knowledge exploration in molecular interaction networks.

Marek Ostaszewski, Emmanuel Kieffer, Grégoire Danoy, Reinhard Schneider, Pascal Bouvry

BMC Bioinform., 2018

MolArt: a molecular structure annotation and visualization tool.

David Hoksza, Piotr Gawron, Marek Ostaszewski, Reinhard Schneider

Bioinform., 2018

Single and Multiobjective Evolutionary Algorithms for Clustering Biomedical Information with Unknown Number of Clusters.

María Eugenia Curi, Lucía Carozzi, Renzo Massobrio, Sergio Nesmachnow, Grégoire Danoy, Marek Ostaszewski, Pascal Bouvry

Proceedings of the Bioinspired Optimization Methods and Their Applications, 2018

2016

Integration and Visualization of Translational Medicine Data for Better Understanding of Human Diseases.

Venkata P. Satagopam, Wei Gu, Serge Eifes, Piotr Gawron, Marek Ostaszewski, Stephan Gebel, Adriano Barbosa-Silva, Rudi Balling, Reinhard Schneider

Big Data, 2016

2014

Visualization and classification of protein secondary structures using Self-Organizing Maps.

Christian Grévisse, Ian Muller, Juan Luis Jiménez Laredo, Marek Ostaszewski, Grégoire Danoy, Pascal Bouvry

Proceedings of the 2014 IEEE Symposium on Computational Intelligence in Multi-Criteria Decision-Making, 2014

2009

Multiobjective classification with moGEP: an application in the network traffic domain.

Marek Ostaszewski, Pascal Bouvry, Franciszek Seredynski

Proceedings of the Genetic and Evolutionary Computation Conference, 2009

2008

Adaptive and dynamic intrusion detection by means of idiotypic networks paradigm.

Marek Ostaszewski, Pascal Bouvry, Franciszek Seredynski

Proceedings of the 22nd IEEE International Symposium on Parallel and Distributed Processing, 2008

Denial of service detection and analysis using idiotypic networks paradigm.

Marek Ostaszewski, Pascal Bouvry, Franciszek Seredynski

Proceedings of the Genetic and Evolutionary Computation Conference, 2008

An approach to intrusion detection by means of idiotypic networks paradigm.

Marek Ostaszewski, Pascal Bouvry, Franciszek Seredynski

Proceedings of the IEEE Congress on Evolutionary Computation, 2008

2007

Coevolutionary-based Mechanisms for Network Anomaly Detection.

Marek Ostaszewski, Franciszek Seredynski, Pascal Bouvry

J. Math. Model. Algorithms, 2007

2006

A nonself space approach to network anomaly detection.

Marek Ostaszewski, Franciszek Seredynski, Pascal Bouvry

Proceedings of the 20th International Parallel and Distributed Processing Symposium (IPDPS 2006), 2006

Network Traffic Analysis Using Immunological and Evolutionary Paradigms.

Marek Ostaszewski, Franciszek Seredynski, Pascal Bouvry

Proceedings of the Intelligent Information Processing and Web Mining, 2006

Immune anomaly detection enhanced with evolutionary paradigms.

Marek Ostaszewski, Franciszek Seredynski, Pascal Bouvry

Proceedings of the Genetic and Evolutionary Computation Conference, 2006