Honglin Li

This page is a disambiguation page, it actually contains mutiple papers from persons of the same or a similar name.

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Bibliography

2024
MoDAFold: a strategy for predicting the structure of missense mutant protein based on AlphaFold2 and molecular dynamics.
Briefings Bioinform., January, 2024

PathAsst: A Generative Foundation AI Assistant towards Artificial General Intelligence of Pathology.
Proceedings of the Thirty-Eighth AAAI Conference on Artificial Intelligence, 2024

2023
MAF-Net: multidimensional attention fusion network for multichannel speech separation.
Multim. Syst., December, 2023

RNAincoder: a deep learning-based encoder for RNA and RNA-associated interaction.
Nucleic Acids Res., July, 2023

MacFrag: segmenting large-scale molecules to obtain diverse fragments with high qualities.
Bioinform., January, 2023

Remote art therapy in collaborative virtual environment: a pilot study on feasibility and usability.
Proceedings of the IEEE Conference on Virtual Reality and 3D User Interfaces Abstracts and Workshops, 2023

2022
VRPharmer: bringing virtual reality into pharmacophore-based virtual screening with interactive exploration and realistic visualization.
Bioinform., October, 2022

Molecular Docking for Ligand-Receptor Binding Process Based on Heterogeneous Computing.
Sci. Program., 2022

Supply chain design for transactive energy operations in the nexus of manufacturing, microgrid and climate.
J. Oper. Res. Soc., 2022

SwinOCSR: end-to-end optical chemical structure recognition using a Swin Transformer.
J. Cheminformatics, 2022

ReMODE: a deep learning-based web server for target-specific drug design.
J. Cheminformatics, 2022

Automatic pulmonary auscultation grading diagnosis of Coronavirus Disease 2019 in China with artificial intelligence algorithms: A cohort study.
Comput. Methods Programs Biomed., 2022

Accurate floorplan reconstruction using geometric priors.
Comput. Graph., 2022

PFmulDL: a novel strategy enabling multi-class and multi-label protein function annotation by integrating diverse deep learning methods.
Comput. Biol. Medicine, 2022

ncRNAInter: a novel strategy based on graph neural network to discover interactions between lncRNA and miRNA.
Briefings Bioinform., 2022

Comprehensive assessment of deep generative architectures for de novo drug design.
Briefings Bioinform., 2022

Multi-modal chemical information reconstruction from images and texts for exploring the near-drug space.
Briefings Bioinform., 2022

e-TSN: an interactive visual exploration platform for target-disease knowledge mapping from literature.
Briefings Bioinform., 2022

Semantic Video Entity Linking.
Proceedings of the Semantic Web: ESWC 2022 Satellite Events - Hersonissos, Crete, Greece, May 29, 2022

Dive In! Computer World Action: A Platform Game for Secondary School Students to Learn Boolean Operations in Computer Science.
Proceedings of the Extended Abstracts of the Annual Symposium on Computer-Human Interaction in Play, 2022

2021
Automatic embroidery texture synthesis for garment design and online display.
Vis. Comput., 2021

Deep-based Self-refined Face-top Coordination.
ACM Trans. Multim. Comput. Commun. Appl., 2021

Continual Learning Using Bayesian Neural Networks.
IEEE Trans. Neural Networks Learn. Syst., 2021

Greening of the Qinghai-Tibet Plateau and Its Response to Climate Variations along Elevation Gradients.
Remote. Sens., 2021

HeterSkinNet: A Heterogeneous Network for Skin Weights Prediction.
Proc. ACM Comput. Graph. Interact. Tech., 2021

ePharmer: An integrated and graphical software for pharmacophore-based virtual screening.
J. Comput. Chem., 2021

Cover Image.
J. Comput. Chem., 2021

Monitoring Vegetation Greenness in Response to Climate Variation along the Elevation Gradient in the Three-River Source Region of China.
ISPRS Int. J. Geo Inf., 2021

Designing A Clinically Applicable Deep Recurrent Model to Identify Neuropsychiatric Symptoms in People Living with Dementia Using In-Home Monitoring Data.
CoRR, 2021

An attention model to analyse the risk of agitation and urinary tract infections in people with dementia.
CoRR, 2021

Wowtao: A personalized pottery-making system.
Comput. Ind., 2021

Automatic pose and wrinkle transfer for aesthetic garment display.
Comput. Aided Geom. Des., 2021

Digital Twin Technology for Integrated Energy System and Its Application.
Proceedings of the IEEE 2nd International Conference on Digital Twins and Parallel Intelligence, 2021

2020
NOREVA: enhanced normalization and evaluation of time-course and multi-class metabolomic data.
Nucleic Acids Res., 2020

Computational Insight into the Allosteric Activation Mechanism of Farnesoid X Receptor.
J. Chem. Inf. Model., 2020

Machine learning for risk analysis of Urinary Tract Infection in people with dementia.
CoRR, 2020

Semi-supervised Federated Learning for Activity Recognition.
CoRR, 2020

Continual Learning Using Task Conditional Neural Networks.
CoRR, 2020

Verifying the Causes of Adversarial Examples.
Proceedings of the 25th International Conference on Pattern Recognition, 2020

2019
Caricature synthesis with feature deviation matching under example-based framework.
Vis. Comput., 2019

Pharmacodynamics simulation of HOEC by a computational model of arachidonic acid metabolic network.
Quant. Biol., 2019

eSHAFTS: Integrated and graphical drug design software based on 3D molecular similarity.
J. Comput. Chem., 2019

Continual Learning in Deep Neural Network by Using a Kalman Optimiser.
CoRR, 2019

Joint Video Caching and User Association With Mobile Edge Computing.
Proceedings of the 2019 IEEE Wireless Communications and Networking Conference Workshop, 2019

Delay-Based Congestion Control for Multipath TCP in Heterogeneous Wireless Networks.
Proceedings of the 2019 IEEE Wireless Communications and Networking Conference Workshop, 2019

2018
A Bayesian Space-Time Hierarchical Model for Remotely Sensed Lattice Data Based on Multiscale Homogeneous Statistical Units.
IEEE J. Sel. Top. Appl. Earth Obs. Remote. Sens., 2018

Kalman Filter Modifier for Neural Networks in Non-stationary Environments.
CoRR, 2018

Cross-Cultural Communication in Design Collaboration.
Proceedings of the Cross-Cultural Design. Methods, Tools, and Users, 2018

S.A.D in Education and CHEER in Practice: A Case Study of DTIT Program at NTUA.
Proceedings of the Cross-Cultural Design. Applications in Cultural Heritage, Creativity and Social Development, 2018

2017
Statistical Analysis, Investigation, and Prediction of the Water Positions in the Binding Sites of Proteins.
J. Chem. Inf. Model., July, 2017

PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database.
Nucleic Acids Res., 2017

Synthesis of Facial Images Based on Relevance Feedback.
Proceedings of the 2017 International Conference on Cyberworlds, 2017

2016
Retrieval of clothing images based on relevance feedback with focus on collar designs.
Vis. Comput., 2016

Enhancing the Enrichment of Pharmacophore-Based Target Prediction for the Polypharmacological Profiles of Drugs.
J. Chem. Inf. Model., 2016

Accurate prediction of RNA-binding protein residues with two discriminative structural descriptors.
BMC Bioinform., 2016

Example-based Caricature Synthesis via Feature Deviation Matching.
Proceedings of the Short Paper Proceedings of the 33rd Computer Graphics International, Heraklion, Greece, June 28, 2016

Breaking the Top-k Restriction of the kNN Hidden Databases.
Proceedings of the 7th International Conference on Cloud Computing and Big Data, 2016

2015
An Accurate Metalloprotein-Specific Scoring Function and Molecular Docking Program Devised by a Dynamic Sampling and Iteration Optimization Strategy.
J. Chem. Inf. Model., 2015

2014
iDrug: a web-accessible and interactive drug discovery and design platform.
J. Cheminformatics, 2014

2013
SimG: An Alignment Based Method for Evaluating the Similarity of Small Molecules and Binding Sites.
J. Chem. Inf. Model., 2013

An improved sequence based prediction protocol for DNA-binding proteins using SVM and comprehensive feature analysis.
BMC Bioinform., 2013

PTID: an integrated web resource and computational tool for agrochemical discovery.
Bioinform., 2013

ChemMapper: a versatile web server for exploring pharmacology and chemical structure association based on molecular 3D similarity method.
Bioinform., 2013

2011
SHAFTS: A Hybrid Approach for 3D Molecular Similarity Calculation. 1. Method and Assessment of Virtual Screening.
J. Chem. Inf. Model., 2011

Identification of Inhibitors against p90 Ribosomal S6 Kinase 2 (RSK2) through Structure-Based Virtual Screening with the Inhibitor-Constrained Refined Homology Model.
J. Chem. Inf. Model., 2011

A Steganalysis Method for 2D Engineering Graphics Based on the Statistic of Geometric Features.
Int. J. Digit. Crime Forensics, 2011

2010
PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach.
Nucleic Acids Res., 2010

Bioactive Conformational Generation of Small Molecules: A Comparative Analysis between Force-Field and Multiple Empirical Criteria Based Methods.
BMC Bioinform., 2010

2009
Optimizing Energy Potential for Protein Fold Recognition with Parametric Evaluation Function.
J. Comput. Biol., 2009

An improved adaptive genetic algorithm for protein-ligand docking.
J. Comput. Aided Mol. Des., 2009

Cyndi: a multi-objective evolution algorithm based method for bioactive molecular conformational generation.
BMC Bioinform., 2009

An effective docking strategy for virtual screening based on multi-objective optimization algorithm.
BMC Bioinform., 2009

2008
Mechanics of Channel Gating of the Nicotinic Acetylcholine Receptor.
PLoS Comput. Biol., 2008

An Improved PMF Scoring Function for Universally Predicting the Interactions of a Ligand with Protein, DNA, and RNA.
J. Chem. Inf. Model., 2008

PDTD: a web-accessible protein database for drug target identification.
BMC Bioinform., 2008

2006
TarFisDock: a web server for identifying drug targets with docking approach.
Nucleic Acids Res., 2006

Multi-ontology Based Multimedia Annotation for Domain-specific Information Retrieval.
Proceedings of the IEEE International Conference on Sensor Networks, 2006

Semantic Segmentation of Documentary Video using Music Breaks.
Proceedings of the 2006 IEEE International Conference on Multimedia and Expo, 2006

Efficient Image Classification on Vertically Decomposed Data.
Proceedings of the 22nd International Conference on Data Engineering Workshops, 2006

Integrated Documentary Video Access for Education.
Proceedings of the 21st International Conference on Computers and Their Applications, 2006

2005
Ontology- Based Information Integration in Virtual Learning Environment.
Proceedings of the 2005 IEEE / WIC / ACM International Conference on Web Intelligence (WI 2005), 2005

2004
Optimized packet interleaving for streaming applications on burst-lossy channels.
Proceedings of the Visual Information Processing XIII, Orlando, FL, USA, April 12, 2004, 2004

2002
Multiclass kernel-based feature extraction.
Proceedings of the Data Mining and Knowledge Discovery: Theory, 2002


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