Abhyudai Singh

Anna Hlubinová

Axioms, 2023

Optimizing Precision in Cellular Clocks Through Self-Regulated Accumulation Of Molecules.

[BibT_eX]

[DOI]

Sayeh Rezaee

Proceedings of the 27th International Conference on System Theory, Control and Computing, 2023

Joint Distribution of Protein Concentration and Cell Volume Coupled by Feedback in Dilution.

[BibT_eX]

[DOI]

Iryna Zabaikina

Proceedings of the Computational Methods in Systems Biology, 2023

Comparing Negative Feedback Mechanisms in Gene Expression: From Single Cells to Cell Populations.

[BibT_eX]

[DOI]

Zhanhao Zhang

Proceedings of the 62nd IEEE Conference on Decision and Control, 2023

Stochastic dynamics of the logistic growth model subjected to environmental perturbations.

[BibT_eX]

[DOI]

Proceedings of the IEEE Conference on Control Technology and Applications, 2023

Amplification of noisy gene expression by protein burden: An analytical approach.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2023

2022

Concentration fluctuations in growing and dividing cells: Insights into the emergence of concentration homeostasis.

[BibT_eX]

[DOI]

Chen Jia

Ramon Grima

PLoS Comput. Biol., October, 2022

Characterizing non-exponential growth and bimodal cell size distributions in fission yeast: An analytical approach.

[BibT_eX]

[DOI]

Chen Jia

Ramon Grima

PLoS Comput. Biol., 2022

Feedback strategies for threshold crossing of protein levels at a prescribed time.

[BibT_eX]

[DOI]

Proceedings of the 30th Mediterranean Conference on Control and Automation, 2022

Optimal network transmission to minimize state-estimation error and channel usage.

[BibT_eX]

[DOI]

Sayeh Rezaee

Proceedings of the 26th International Conference on System Theory, Control and Computing , 2022

Frequency-dependent modulation of stochasticity in postsynaptic neuron firing times.

[BibT_eX]

[DOI]

Proceedings of the 61st IEEE Conference on Decision and Control, 2022

Fluctuation-based approaches to infer kinetics of cell-state switching.

[BibT_eX]

[DOI]

Michael M. Saint-Antoine

Ramon Grima

Proceedings of the 61st IEEE Conference on Decision and Control, 2022

Cell size control shapes fluctuations in colony population.

[BibT_eX]

[DOI]

Proceedings of the 61st IEEE Conference on Decision and Control, 2022

Limits on inferring gene regulatory networks from single-cell measurements of unstable mRNA levels.

[BibT_eX]

[DOI]

Tarun Mahajan

Michael M. Saint-Antoine

Roy D. Dar

Proceedings of the 61st IEEE Conference on Decision and Control, 2022

Sequestration-based feedback control of blood platelet levels.

[BibT_eX]

[DOI]

Proceedings of the 61st IEEE Conference on Decision and Control, 2022

Using fluctuation statistics to infer random forces impinging on a nanosensor.

[BibT_eX]

[DOI]

Proceedings of the IEEE Conference on Control Technology and Applications, 2022

Time triggered stochastic hybrid systems with nonlinear continuous dynamics.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2022

Threshold-crossing time statistics for size-dependent gene expression in growing cells.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2022

Kinetic Constraints on Noise Reduction in Feedback Gene Regulatory Networks.

[BibT_eX]

[DOI]

Tarun Mahajan

Roy D. Dar

Proceedings of the American Control Conference, 2022

2021

MicroRNA Based Feedforward Control of Intrinsic Gene Expression Noise.

[BibT_eX]

[DOI]

Michal Hojcka

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Noise suppression in stochastic genetic circuits using PID controllers.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2021

A modified fluctuation test for elucidating drug resistance in microbial and cancer cells.

[BibT_eX]

[DOI]

Eur. J. Control, 2021

A Population-Based Approach to Study the Effects of Growth and Division Rates on the Dynamics of Cell Size Statistics.

[BibT_eX]

[DOI]

Niccoló Totis

Armin Küper

Steffen Waldherr

IEEE Control. Syst. Lett., 2021

Comparing feedback strategies for minimizing noise in gene expression event timing.

[BibT_eX]

[DOI]

Proceedings of the 29th Mediterranean Conference on Control and Automation, 2021

Role of periodic forcing on the stochastic dynamics of a biomolecular clock.

[BibT_eX]

[DOI]

Zhanhao Zhang

Proceedings of the 2021 European Control Conference, 2021

Feedforward genetic circuits regulate the precision of event timing.

[BibT_eX]

[DOI]

Proceedings of the 2021 European Control Conference, 2021

Protein Noise and Distribution in a Two-Stage Gene-Expression Model Extended by an mRNA Inactivation Loop.

[BibT_eX]

[DOI]

Candan Çelik

Proceedings of the Computational Methods in Systems Biology, 2021

Modulation of stochastic gene expression by nuclear export processes.

[BibT_eX]

[DOI]

Proceedings of the 2021 60th IEEE Conference on Decision and Control (CDC), 2021

Role of intercellular coupling and delay on the synchronization of genetic oscillators.

[BibT_eX]

[DOI]

Lee Tracey

Proceedings of the 2021 American Control Conference, 2021

2020

Time Delays in a Genetic Positive-Feedback Circuit.

[BibT_eX]

[DOI]

IEEE Control. Syst. Lett., 2020

Moment analysis of stochastic hybrid systems using semidefinite programming.

[BibT_eX]

[DOI]

Autom., 2020

Optimal bang-bang feedback for bursty gene expression.

[BibT_eX]

[DOI]

Iryna Zabaikina

Proceedings of the 18th European Control Conference, 2020

Information processing in unregulated and autoregulated gene expression.

[BibT_eX]

[DOI]

Proceedings of the 18th European Control Conference, 2020

Stochastic stability of a cell cycle model with "silence period".

[BibT_eX]

[DOI]

Yao Li

Proceedings of the 18th European Control Conference, 2020

The Effect of Stochastic Bursting on Biological Clock Precision.

[BibT_eX]

[DOI]

James MacLaurin

Proceedings of the 18th European Control Conference, 2020

Stationary Distributions and Metastable Behaviour for Self-regulating Proteins with General Lifetime Distributions.

[BibT_eX]

[DOI]

Candan Çelik

Proceedings of the Computational Methods in Systems Biology, 2020

Hybrid systems framework for modeling host-parasitoid population dynamics.

[BibT_eX]

[DOI]

Brooks Emerick

Proceedings of the 59th IEEE Conference on Decision and Control, 2020

Controlling event timing precision for gene expression with external disturbances.

[BibT_eX]

[DOI]

Proceedings of the 59th IEEE Conference on Decision and Control, 2020

Propagation of stochastic gene expression in the presence of decoys.

[BibT_eX]

[DOI]

Proceedings of the 59th IEEE Conference on Decision and Control, 2020

Noise propagation in metabolic pathways: the role of growth-mediated feedback.

[BibT_eX]

[DOI]

Proceedings of the 59th IEEE Conference on Decision and Control, 2020

Noise analysis in biochemical complex formation from stochastically produced components.

[BibT_eX]

[DOI]

Zikai Xu

Proceedings of the 2020 American Control Conference, 2020

Noise suppression by stochastic delays in negatively autoregulated gene expression.

[BibT_eX]

[DOI]

Madeline Smith

Proceedings of the 2020 American Control Conference, 2020

Genomic decoy sites enhance the oscillatory regime of a biomolecular clock.

[BibT_eX]

[DOI]

Proceedings of the 2020 American Control Conference, 2020

2019

Analysis and Control of Stochastic Systems Using Semidefinite Programming Over Moments.

[BibT_eX]

[DOI]

IEEE Trans. Autom. Control., 2019

Moment Analysis of Linear Time-Varying Dynamical Systems with Renewal Transitions.

[BibT_eX]

[DOI]

Cesar Augusto Nieto-Acuna

SIAM J. Control. Optim., 2019

Efficient computation of stochastic cell-size transient dynamics.

[BibT_eX]

[DOI]

Juan Manuel Pedraza

BMC Bioinform., 2019

Controlling Noisy Expression Through Auto Regulation of Burst Frequency and Protein Stability.

[BibT_eX]

[DOI]

Proceedings of the Hybrid Systems Biology - 6th International Workshop, 2019

Analysis of coupled genetic oscillators with delayed positive feedback interconnections.

[BibT_eX]

[DOI]

Giulia Giordano

Franco Blanchini

Proceedings of the 17th European Control Conference, 2019

Driving an Ornstein-Uhlenbeck Process to Desired First-Passage Time Statistics.

[BibT_eX]

[DOI]

Vaibhav Srivastava

Proceedings of the 17th European Control Conference, 2019

Noise induced bimodality in genetic circuits with monostable positive feedback.

[BibT_eX]

[DOI]

Proceedings of the 17th European Control Conference, 2019

Cell Volume Distributions in Exponentially Growing Populations.

[BibT_eX]

[DOI]

Proceedings of the Computational Methods in Systems Biology, 2019

Evaluating Pruning Methods in Gene Network Inference.

[BibT_eX]

[DOI]

Michael M. Saint-Antoine

Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2019

Modeling and characterization of neuronal synapses using stochastic hybrid systems.

[BibT_eX]

[DOI]

Zikai Xu

Proceedings of the 58th IEEE Conference on Decision and Control, 2019

Proportional and derivative controllers for buffering noisy gene expression.

[BibT_eX]

[DOI]

Proceedings of the 58th IEEE Conference on Decision and Control, 2019

Comparison of feedback strategies for noise suppression in protein level.

[BibT_eX]

[DOI]

Madeline Smith

Proceedings of the 2019 American Control Conference, 2019

Stochastic analysis of feedback control by molecular sequestration.

[BibT_eX]

[DOI]

Proceedings of the 2019 American Control Conference, 2019

2018

iSyTE 2.0: a database for expression-based gene discovery in the eye.

[BibT_eX]

[DOI]

S. Deepthi Ramachandruni

Nucleic Acids Res., 2018

Linear piecewise-deterministic Markov processes with families of random discrete events.

[BibT_eX]

[DOI]

Proceedings of the 16th European Control Conference, 2018

Estimating stationary characteristic functions of stochastic systems via semidefinite programming.

[BibT_eX]

[DOI]

Proceedings of the 16th European Control Conference, 2018

Buffering Gene Expression Noise by MicroRNA Based Feedforward Regulation.

[BibT_eX]

[DOI]

Michal Hojcka

Proceedings of the Computational Methods in Systems Biology, 2018

Exact statistical moments of multi-mode stochastic hybrid systems with renewal transitions.

[BibT_eX]

[DOI]

Zikai Xu

Proceedings of the 57th IEEE Conference on Decision and Control, 2018

Control Design and Analysis of a Stochastic Event-Driven System.

[BibT_eX]

[DOI]

Proceedings of the 57th IEEE Conference on Decision and Control, 2018

Controlling organism size by regulating constituent cell numbers.

[BibT_eX]

[DOI]

Proceedings of the 57th IEEE Conference on Decision and Control, 2018

Elucidating Cell Size Control Mechanisms with Stochastic Hybrid Systems.

[BibT_eX]

[DOI]

Proceedings of the 57th IEEE Conference on Decision and Control, 2018

Extrinsic Noise Suppression in Micro RNA Mediated Incoherent Feedforward Loops.

[BibT_eX]

[DOI]

Proceedings of the 57th IEEE Conference on Decision and Control, 2018

Noise propagation in feedback coupling between cell growth and metabolic activity.

[BibT_eX]

[DOI]

Proceedings of the 57th IEEE Conference on Decision and Control, 2018

Linear Noise Approximation for a Class of Piecewise Deterministic Markov Processes.

[BibT_eX]

[DOI]

Proceedings of the 2018 Annual American Control Conference, 2018

Prediction of Projectile Impact Point using Approximate Statistical Moments.

[BibT_eX]

[DOI]

Cenk Demir

Proceedings of the 2018 Annual American Control Conference, 2018

2017

Prediction and Control of Projectile Impact Point using Approximate Statistical Moments.

[BibT_eX]

[DOI]

Cenk Demir

CoRR, 2017

Control design and analysis of a stochastic network control system.

[BibT_eX]

[DOI]

CoRR, 2017

Moment-based analysis of stochastic hybrid systems with renewal transitions.

[BibT_eX]

[DOI]

Autom., 2017

Noise mechanisms in synaptic transmission and their impact on spike-timing precision.

[BibT_eX]

[DOI]

Proceedings of the 56th IEEE Annual Conference on Decision and Control, 2017

Approximate moment dynamics for polynomial and trigonometric stochastic systems.

[BibT_eX]

[DOI]

Proceedings of the 56th IEEE Annual Conference on Decision and Control, 2017

Semidefinite bounds for moment dynamics: Application to epidemics on networks.

[BibT_eX]

[DOI]

Proceedings of the 56th IEEE Annual Conference on Decision and Control, 2017

Noise propagation in a class of metabolic networks.

[BibT_eX]

[DOI]

Proceedings of the 56th IEEE Annual Conference on Decision and Control, 2017

The effect of multiplicity of infection on the temperateness of a bacteriophage: Implications for viral fitness.

[BibT_eX]

[DOI]

Joshua A. Blotnick

John J. Dennehy

Ryan Zurakowski

Proceedings of the 56th IEEE Annual Conference on Decision and Control, 2017

Stochastic analysis of linear time-invariant systems with renewal transitions.

[BibT_eX]

[DOI]

Proceedings of the 2017 American Control Conference, 2017

Effect of gene-expression bursts on stochastic timing of cellular events.

[BibT_eX]

[DOI]

Proceedings of the 2017 American Control Conference, 2017

Optimal adsorption rate: Implications of the shielding effect.

[BibT_eX]

[DOI]

Carl Agbemabiese

Proceedings of the 2017 American Control Conference, 2017

2016

Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes.

[BibT_eX]

[DOI]

Duarte Antunes

PLoS Comput. Biol., 2016

Moment dynamics for linear time-triggered stochastic hybrid systems.

[BibT_eX]

[DOI]

Proceedings of the 55th IEEE Conference on Decision and Control, 2016

Stochastic optimal control using semidefinite programming for moment dynamics.

[BibT_eX]

[DOI]

Proceedings of the 55th IEEE Conference on Decision and Control, 2016

Stochastic hybrid systems approach to modeling dynamics of cell size.

[BibT_eX]

[DOI]

Proceedings of the 55th IEEE Conference on Decision and Control, 2016

Optimizing phage λ survival in a changing environment: Stochastic model predictions.

[BibT_eX]

[DOI]

Jessica M. Conway

John J. Dennehy

Proceedings of the 55th IEEE Conference on Decision and Control, 2016

Noise reduction for enzymatic reactions: A case study for stochastic product clearance.

[BibT_eX]

[DOI]

Proceedings of the 55th IEEE Conference on Decision and Control, 2016

Stochastic analysis of an incoherent feedforward genetic motif.

[BibT_eX]

[DOI]

Thierry Platini

Proceedings of the 2016 American Control Conference, 2016

Optimal regulation of protein degradation to schedule cellular events with precision.

[BibT_eX]

[DOI]

Proceedings of the 2016 American Control Conference, 2016

2015

Conditional Moment Closure Schemes for Studying Stochastic Dynamics of Genetic Circuits.

[BibT_eX]

[DOI]

IEEE Trans. Biomed. Circuits Syst., 2015

Transcriptional Bursting in Gene Expression: Analytical Results for General Stochastic Models.

[BibT_eX]

[DOI]

Niraj Kumar

Rahul V. Kulkarni

PLoS Comput. Biol., 2015

Inferring single-cell gene expression mechanisms using stochastic simulation.

[BibT_eX]

[DOI]

Bioinform., 2015

Theoretical predictions on the first-passage time for a gene expression model.

[BibT_eX]

[DOI]

Proceedings of the 54th IEEE Conference on Decision and Control, 2015

Metabolic noise reduction for enzymatic reactions: The role of a negative feedback.

[BibT_eX]

[DOI]

Proceedings of the 54th IEEE Conference on Decision and Control, 2015

Approximate statistical dynamics of a genetic feedback circuit.

[BibT_eX]

[DOI]

Niraj Kumar

Rahul V. Kulkarni

Proceedings of the American Control Conference, 2015

Optimal auto-regulation to minimize first-passage time variability in protein level.

[BibT_eX]

[DOI]

Pak-Wing Fok

Proceedings of the American Control Conference, 2015

2014

First-passage time calculations for a gene expression model.

[BibT_eX]

[DOI]

Proceedings of the 53rd IEEE Conference on Decision and Control, 2014

2013

Stochastic analysis of genetic promoter architectures with memory.

[BibT_eX]

[DOI]

Rajesh Karmakar

Proceedings of the 52nd IEEE Conference on Decision and Control, 2013

Conditions for invasion of synapse-forming HIV variants.

[BibT_eX]

[DOI]

Ryan Zurakowski

Proceedings of the 52nd IEEE Conference on Decision and Control, 2013

Computing mRNA and protein statistical moments for a renewal model of stochastic gene-expression.

[BibT_eX]

[DOI]

Duarte Antunes

Proceedings of the 52nd IEEE Conference on Decision and Control, 2013

Stochastic analysis and inference of a two-state genetic promoter model.

[BibT_eX]

[DOI]

Rajesh Karmakar

Proceedings of the American Control Conference, 2013

2012

Quantifying stochasticity in gene-expression with extrinsic parameter fluctuations.

[BibT_eX]

[DOI]

Proceedings of the 51th IEEE Conference on Decision and Control, 2012

Stochastic analysis of genetic feedback circuit controlling HIV cell-fate decision.

[BibT_eX]

[DOI]

Proceedings of the 51th IEEE Conference on Decision and Control, 2012

2011

Approximate Moment Dynamics for Chemically Reacting Systems.

[BibT_eX]

[DOI]

IEEE Trans. Autom. Control., 2011

Genetic negative feedback circuits for filtering stochasticity in gene expression.

[BibT_eX]

[DOI]

Proceedings of the 50th IEEE Conference on Decision and Control and European Control Conference, 2011

2009

Reducing noise through translational control in an auto-regulatory gene network.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2009

2008

Noise suppression in auto-regulatory gene networks.

[BibT_eX]

[DOI]

Proceedings of the 47th IEEE Conference on Decision and Control, 2008

Scaling of stochasticity in gene cascades.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2008

2006

Lognormal Moment Closures for Biochemical Reactions.

[BibT_eX]

[DOI]

Proceedings of the 45th IEEE Conference on Decision and Control, 2006

Moment closure techniques for stochastic models in population biology.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2006

2005

Models for Multi-Specie Chemical Reactions Using Polynomial Stochastic Hybrid Systems.

[BibT_eX]

[DOI]

Proceedings of the 44th IEEE IEEE Conference on Decision and Control and 8th European Control Conference Control, 2005

2004

State feedback regulation of nonlinear systems using conditional integrators.

[BibT_eX]

[DOI]