Hongzhan Huang

Orcid: 0000-0003-3003-1564

According to our database1, Hongzhan Huang authored at least 53 papers between 1999 and 2023.

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Bibliography

2023
Annotation of biologically relevant ligands in UniProtKB using ChEBI.
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Bioinform., January, 2023

Hardware-friendly Scalable Image Super Resolution with Progressive Structured Sparsity.
Proceedings of the 31st ACM International Conference on Multimedia, 2023

2021
UniProt: the universal protein knowledgebase in 2021.
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Nucleic Acids Res., 2021

UniRule: a unified rule resource for automatic annotation in the UniProt Knowledgebase.
Bioinform., 2021

2019
InterPro in 2019: improving coverage, classification and access to protein sequence annotations.
Nucleic Acids Res., 2019

PIRSitePredict for protein functional site prediction using position-specific rules.
Database J. Biol. Databases Curation, 2019

2018
iSyTE 2.0: a database for expression-based gene discovery in the eye.
Nucleic Acids Res., 2018

iPTMnet: an integrated resource for protein post-translational modification network discovery.
Nucleic Acids Res., 2018

Cloud-based Semantic Integration and Knowledge Discovery Systems in Precision Medicine.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2017
Protein Ontology (PRO): enhancing and scaling up the representation of protein entities.
Nucleic Acids Res., 2017

InterPro in 2017 - beyond protein family and domain annotations.
Nucleic Acids Res., 2017

2016
Computational clustering for viral reference proteomes.
Bioinform., 2016

Scalable Text Mining Assisted Curation of PTM Proteoforms in the Protein Ontology.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

2015
The InterPro protein families database: the classification resource after 15 years.
Nucleic Acids Res., 2015

UniRef clusters: a comprehensive and scalable alternative for improving sequence similarity searches.
Bioinform., 2015

2014
Software for pre-processing Illumina next-generation sequencing short read sequences.
Source Code Biol. Medicine, 2014

Protein Ontology: a controlled structured network of protein entities.
Nucleic Acids Res., 2014

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.
Database J. Biol. Databases Curation, 2014

DDI2PPI: an integrated web server for protein-protein interaction and residue contact matrix predictions.
Proceedings of the 5th ACM Conference on Bioinformatics, 2014

2013
Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress.
BMC Syst. Biol., 2013

A framework for biomedical figure segmentation towards image-based document retrieval.
BMC Syst. Biol., 2013

A fast Peptide Match service for UniProt Knowledgebase.
Bioinform., 2013

Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint.
Database J. Biol. Databases Curation, 2013

An Image-Text Approach for Extracting Experimental Evidence of Protein-Protein Interactions in the Biomedical Literature.
Proceedings of the ACM Conference on Bioinformatics, 2013

ngsShoRT: A Software for Pre-processing Illumina Short Read Sequences for De Novo Genome Assembly.
Proceedings of the ACM Conference on Bioinformatics, 2013

An Integrated Approach for Interpretation of Clinical NGS Genomic Variant Data.
Proceedings of the AMIA 2013, 2013

2012
Community annotation and bioinformatics workforce development in concert - Little Skate Genome Annotation Workshops and Jamborees.
Database J. Biol. Databases Curation, 2012

Robust segmentation of biomedical figures for image-based document retrieval.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Building a classifier for identifying sentences pertaining to disease-drug relationships in tardive dyskinesia.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2011
The Protein Ontology: a structured representation of protein forms and complexes.
Nucleic Acids Res., 2011

A comprehensive protein-centric ID mapping service for molecular data integration.
Bioinform., 2011

Protein-Centric Connection of Biomedical Knowledge: Protein Ontology (PRO) Research and Annotation Tools.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

An Automatic System for Extracting Figures and Captions in Biomedical PDF Documents.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2010
Protein Bioinformatics Infrastructure for the Integration and Analysis of Multiple High-Throughput "omics" Data.
Adv. Bioinformatics, 2010

2008
An emerging cyberinfrastructure for biodefense pathogen and pathogen-host data.
Nucleic Acids Res., 2008

2007
UniRef: comprehensive and non-redundant UniProt reference clusters.
Bioinform., 2007

2006
The Universal Protein Resource (UniProt): an expanding universe of protein information.
Nucleic Acids Res., 2006

2005
The Universal Protein Resource (UniProt).
Nucleic Acids Res., 2005

2004
PIRSF: family classification system at the Protein Information Resource.
Nucleic Acids Res., 2004

UniProt: the Universal Protein knowledgebase.
Nucleic Acids Res., 2004

The PIR integrated protein databases and data retrieval system.
Data Sci. J., 2004

The iProClass integrated database for protein functional analysis.
Comput. Biol. Chem., 2004

2003
The Protein Information Resource.
Nucleic Acids Res., 2003

iProClass: an integrated database of protein family, function and structure information.
Nucleic Acids Res., 2003

Protein family classification and functional annotation.
Comput. Biol. Chem., 2003

2002
The Protein Information Resource: an integrated public resource of functional annotation of proteins.
Nucleic Acids Res., 2002

2001
iProClass: an integrated, comprehensive and annotated protein classification database.
Nucleic Acids Res., 2001

Protein Information Resource: a community resource for expert annotation of protein data.
Nucleic Acids Res., 2001

2000
ProClass protein family database.
Nucleic Acids Res., 2000

The Protein Information Resource (PIR).
Nucleic Acids Res., 2000

PIR: a new resource for bioinformatics.
Bioinform., 2000

1999
ProClass Protein Family Database.
Nucleic Acids Res., 1999

Gene Family Identification Network Design for Protein Sequence Analysis.
Int. J. Artif. Intell. Tools, 1999


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