Scott J. Emrich
Orcid: 0000-0002-5741-4517Affiliations:
- University of Notre Dame, USA
According to our database1,
Scott J. Emrich
authored at least 60 papers
between 2003 and 2023.
Collaborative distances:
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Bibliography
2023
Adapting Protein Language Models for Explainable Fine-Grained Evolutionary Pattern Discovery.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023
CodonBERT: Using BERT for Sentiment Analysis to Better Predict Genes with Low Expression.
Proceedings of the 14th ACM International Conference on Bioinformatics, 2023
2022
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022
2021
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
Fine-Grained Synonymous Codon Usage Patterns and their Potential Role in Functional Protein Production.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021
2020
Extreme Phenotype Sampling Improves LASSO and Random Forest Marker Selection for Complex Traits.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
Proceedings of the BCB '20: 11th ACM International Conference on Bioinformatics, 2020
2019
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
CoRR, 2019
2018
Combining Static and Dynamic Storage Management for Data Intensive Scientific Workflows.
IEEE Trans. Parallel Distributed Syst., 2018
J. Bioinform. Comput. Biol., 2018
Predicting Local Inversions Using Rectangle Clustering and Representative Rectangle Prediction.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
The Effects of Normalization, Transformation, and Rarefaction on Clustering of OTU Abundance.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
Effects from structure of Metabarcode Sequences on Lossy Analysis of Microbiome Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
Detecting Chromosomal Inversions from Dense SNPs by Combining PCA and Association Tests.
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
2017
Widespread position-specific conservation of synonymous rare codons within coding sequences.
PLoS Comput. Biol., 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
2016
Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016
Proceedings of the 7th ACM International Conference on Bioinformatics, 2016
2015
Accelerating Comparative Genomics Work ows in a Distributed Environment with Optimized Data Partitioning and Workflow Fusion.
Scalable Comput. Pract. Exp., 2015
VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases.
Nucleic Acids Res., 2015
Bioinform., 2015
Proceedings of the 5th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2015
Scaling Up Bioinformatics Workflows with Dynamic Job Expansion: A Case Study Using Galaxy and Makeflow.
Proceedings of the 11th IEEE International Conference on e-Science, 2015
Balancing Thread-Level and Task-Level Parallelism for Data-Intensive Workloads on Clusters and Clouds.
Proceedings of the 2015 IEEE International Conference on Cluster Computing, 2015
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015
2014
Int. J. Data Min. Bioinform., 2014
Mapping genomic features to functional traits through microbial whole genome sequences.
Int. J. Bioinform. Res. Appl., 2014
Int. J. Bioinform. Res. Appl., 2014
Concurr. Comput. Pract. Exp., 2014
Expanding Tasks of Logical Workflows Into Independent Workflows for Improved Scalability.
Proceedings of the 14th IEEE/ACM International Symposium on Cluster, 2014
Accelerating Comparative Genomics Workflows in a Distributed Environment with Optimized Data Partitioning.
Proceedings of the 14th IEEE/ACM International Symposium on Cluster, 2014
2013
Predicting bacterial functional traits from whole genome sequences using random forest.
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013
Proceedings of the 13th IEEE/ACM International Symposium on Cluster, 2013
2012
IEEE Trans. Parallel Distributed Syst., 2012
VectorBase: improvements to a bioinformatics resource for invertebrate vector genomics.
Nucleic Acids Res., 2012
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
Shifting the bioinformatics computing paradigm: A case study in parallelizing genome annotation using MAKER and Work Queue.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
2011
Concurr. Comput. Pract. Exp., 2011
Proceedings of the IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences, 2011
2010
Harnessing parallelism in multicore clusters with the All-Pairs, Wavefront, and Makeflow abstractions.
Clust. Comput., 2010
BMC Bioinform., 2010
Proceedings of the 19th ACM International Symposium on High Performance Distributed Computing, 2010
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010
Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010
2009
Proceedings of the 2nd Workshop on Many-Task Computing on Grids and Supercomputers, 2009
Harnessing parallelism in multicore clusters with the all-pairs and wavefront abstractions.
Proceedings of the 18th ACM International Symposium on High Performance Distributed Computing, 2009
Proceedings of the Bioinformatics and Computational Biology, 2009
2007
J. Parallel Distributed Comput., 2007
Massively parallel expressed sequence tag clustering.
Proceedings of the ISCA 20th International Conference on Parallel and Distributed Computing Systems, 2007
2004
A comparison of evolved finite state classifiers and interpolated Markov models for improving PCR primer design.
Proceedings of the 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2004
2003
Nucleic Acids Res., 2003