Danny Ziyi Chen

Orcid: 0000-0001-6565-2884

Affiliations:
  • University of Notre Dame, USA


According to our database1, Danny Ziyi Chen authored at least 349 papers between 1989 and 2024.

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Bibliography

2024
A Transformer-Based Knowledge Distillation Network for Cortical Cataract Grading.
IEEE Trans. Medical Imaging, March, 2024

TestFit: A plug-and-play one-pass test time method for medical image segmentation.
Medical Image Anal., February, 2024

Path-GPTOmic: A Balanced Multi-modal Learning Framework for Survival Outcome Prediction.
CoRR, 2024

Making Pre-trained Language Models Great on Tabular Prediction.
CoRR, 2024

SHMC-Net: A Mask-guided Feature Fusion Network for Sperm Head Morphology Classification.
CoRR, 2024

ConUNETR: A Conditional Transformer Network for 3D Micro-CT Embryonic Cartilage Segmentation.
CoRR, 2024

AI-Enhanced Virtual Reality in Medicine: A Comprehensive Survey.
CoRR, 2024

Densely Decoded Networks with Adaptive Deep Supervision for Medical Image Segmentation.
CoRR, 2024

PHG-Net: Persistent Homology Guided Medical Image Classification<sup>*</sup>.
Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision, 2024

2023
CCF-GNN: A Unified Model Aggregating Appearance, Microenvironment, and Topology for Pathology Image Classification.
IEEE Trans. Medical Imaging, November, 2023

NeRVI: Compressive neural representation of visualization images for communicating volume visualization results.
Comput. Graph., November, 2023

The importance of resource awareness in artificial intelligence for healthcare.
Nat. Mac. Intell., July, 2023

A two-stage enhancement network with optimized effective receptive field for speckle image reconstruction.
Multim. Tools Appl., May, 2023

A Robust Shape-Aware Rib Fracture Detection and Segmentation Framework With Contrastive Learning.
IEEE Trans. Multim., 2023

TANGO: A GO-Term Embedding Based Method for Protein Semantic Similarity Prediction.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

A CNN-LSTM Ensemble Model for Predicting Protein-Protein Interaction Binding Sites.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Identifying Electrocardiogram Abnormalities Using a Handcrafted-Rule-Enhanced Neural Network.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

D-former: a U-shaped Dilated Transformer for 3D medical image segmentation.
Neural Comput. Appl., 2023

SQA-SAM: Segmentation Quality Assessment for Medical Images Utilizing the Segment Anything Model.
CoRR, 2023

U-Net v2: Rethinking the Skip Connections of U-Net for Medical Image Segmentation.
CoRR, 2023

PHG-Net: Persistent Homology Guided Medical Image Classification.
CoRR, 2023

OneSeg: Self-learning and One-shot Learning based Single-slice Annotation for 3D Medical Image Segmentation.
CoRR, 2023

SamDSK: Combining Segment Anything Model with Domain-Specific Knowledge for Semi-Supervised Learning in Medical Image Segmentation.
CoRR, 2023

Ord2Seq: Regarding Ordinal Regression as Label Sequence Prediction.
CoRR, 2023

Input Augmentation with SAM: Boosting Medical Image Segmentation with Segmentation Foundation Model.
CoRR, 2023

GPT4MIA: Utilizing Geneative Pre-trained Transformer (GPT-3) as A Plug-and-Play Transductive Model for Medical Image Analysis.
CoRR, 2023

ExcelFormer: A Neural Network Surpassing GBDTs on Tabular Data.
CoRR, 2023

Robust Training of Graph Neural Networks via Noise Governance.
Proceedings of the Sixteenth ACM International Conference on Web Search and Data Mining, 2023

GCL: Gradient-Guided Contrastive Learning for Medical Image Segmentation with Multi-Perspective Meta Labels.
Proceedings of the 31st ACM International Conference on Multimedia, 2023

Input Augmentation with SAM: Boosting Medical Image Segmentation with Segmentation Foundation Model.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops, 2023

RR-CP: Reliable-Region-Based Conformal Prediction for Trustworthy Medical Image Classification.
Proceedings of the Uncertainty for Safe Utilization of Machine Learning in Medical Imaging, 2023

SwIPE: Efficient and Robust Medical Image Segmentation with Implicit Patch Embeddings.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

GPT4MIA: Utilizing Generative Pre-trained Transformer (GPT-3) as a Plug-and-Play Transductive Model for Medical Image Analysis.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops, 2023

GrNT: Gate-Regularized Network Training for Improving Multi-Scale Fusion in Medical Image Segmentation.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

A Point in the Right Direction: Vector Prediction for Spatially-Aware Self-Supervised Volumetric Representation Learning.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

ConvFormer: Combining CNN and Transformer for Medical Image Segmentation.
Proceedings of the 20th IEEE International Symposium on Biomedical Imaging, 2023

Robust Image Ordinal Regression with Controllable Image Generation.
Proceedings of the Thirty-Second International Joint Conference on Artificial Intelligence, 2023

TabCaps: A Capsule Neural Network for Tabular Data Classification with BoW Routing.
Proceedings of the Eleventh International Conference on Learning Representations, 2023

T2G-FORMER: Organizing Tabular Features into Relation Graphs Promotes Heterogeneous Feature Interaction.
Proceedings of the Thirty-Seventh AAAI Conference on Artificial Intelligence, 2023

2022
STNet: An End-to-End Generative Framework for Synthesizing Spatiotemporal Super-Resolution Volumes.
IEEE Trans. Vis. Comput. Graph., 2022

Data-Driven Deep Supervision for Medical Image Segmentation.
IEEE Trans. Medical Imaging, 2022

H-EMD: A Hierarchical Earth Mover's Distance Method for Instance Segmentation.
IEEE Trans. Medical Imaging, 2022

A Task Decomposing and Cell Comparing Method for Cervical Lesion Cell Detection.
IEEE Trans. Medical Imaging, 2022

Discriminative Cervical Lesion Detection in Colposcopic Images With Global Class Activation and Local Bin Excitation.
IEEE J. Biomed. Health Informatics, 2022

HMCKRAutoEncoder: An Interpretable Deep Learning Framework for Time Series Analysis.
IEEE Trans. Emerg. Top. Comput., 2022

Global Filter of Fusing Near-Infrared and Visible Images in Frequency Domain for Defogging.
IEEE Signal Process. Lett., 2022

ChroNet: A multi-task learning based approach for prediction of multiple chronic diseases.
Multim. Tools Appl., 2022

CMC-Net: 3D calf muscle compartment segmentation with sparse annotation.
Medical Image Anal., 2022

KCB-Net: A 3D knee cartilage and bone segmentation network via sparse annotation.
Medical Image Anal., 2022

Image Complexity Guided Network Compression for Biomedical Image Segmentation.
ACM J. Emerg. Technol. Comput. Syst., 2022

Guest Editors' Foreword.
Discret. Comput. Geom., 2022

IMIIN: An inter-modality information interaction network for 3D multi-modal breast tumor segmentation.
Comput. Medical Imaging Graph., 2022

TGSA: protein-protein association-based twin graph neural networks for drug response prediction with similarity augmentation.
Bioinform., 2022

Usable Region Estimate for Assessing Practical Usability of Medical Image Segmentation Models.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Self-learning and One-Shot Learning Based Single-Slice Annotation for 3D Medical Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Data-Driven Deep Supervision for Skin Lesion Classification.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Automating Blastocyst Formation and Quality Prediction in Time-Lapse Imaging with Adaptive Key Frame Selection.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Improving Human Sperm Head Morphology Classification With Unsupervised Anatomical Feature Distillation.
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022

ME-GAN: Learning Panoptic Electrocardio Representations for Multi-view ECG Synthesis Conditioned on Heart Diseases.
Proceedings of the International Conference on Machine Learning, 2022

Keep Your Friends Close & Enemies Farther: Debiasing Contrastive Learning with Spatial Priors in 3D Radiology Images.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Unsupervised Feature Clustering Improves Contrastive Representation Learning for Medical Image Segmentation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

CTT-Net: A Multi-view Cross-token Transformer for Cataract Postoperative Visual Acuity Prediction.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Scalar2Vec: Translating Scalar Fields to Vector Fields via Deep Learning.
Proceedings of the 15th IEEE Pacific Visualization Symposium, 2022

DANets: Deep Abstract Networks for Tabular Data Classification and Regression.
Proceedings of the Thirty-Sixth AAAI Conference on Artificial Intelligence, 2022

2021
V2V: A Deep Learning Approach to Variable-to-Variable Selection and Translation for Multivariate Time-Varying Data.
IEEE Trans. Vis. Comput. Graph., 2021

Interactive Few-Shot Learning: Limited Supervision, Better Medical Image Segmentation.
IEEE Trans. Medical Imaging, 2021

KerNet: A Novel Deep Learning Approach for Keratoconus and Sub-Clinical Keratoconus Detection Based on Raw Data of the Pentacam HR System.
IEEE J. Biomed. Health Informatics, 2021

A Deep Learning Approach for Colonoscopy Pathology WSI Analysis: Accurate Segmentation and Classification.
IEEE J. Biomed. Health Informatics, 2021

Towards Interpretable Arrhythmia Classification With Human-Machine Collaborative Knowledge Representation.
IEEE Trans. Biomed. Eng., 2021

A semi-supervised deep convolutional framework for signet ring cell detection.
Neurocomputing, 2021

Cascaded SE-ResUnet for segmentation of thoracic organs at risk.
Neurocomputing, 2021

Influence-based Voronoi diagrams of clusters.
Comput. Geom., 2021

Reconstructing Unsteady Flow Data From Representative Streamlines via Diffusion and Deep-Learning-Based Denoising.
IEEE Computer Graphics and Applications, 2021

Hierarchical Self-supervised Learning for Medical Image Segmentation Based on Multi-domain Data Aggregation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

kCBAC-Net: Deeply Supervised Complete Bipartite Networks with Asymmetric Convolutions for Medical Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

Objective-Dependent Uncertainty Driven Retinal Vessel Segmentation.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

Electrocardio Panorama: Synthesizing New ECG views with Self-supervision.
Proceedings of the Thirtieth International Joint Conference on Artificial Intelligence, 2021

A Receptor Skeleton for Capsule Neural Networks.
Proceedings of the 38th International Conference on Machine Learning, 2021

INVITED: kCC-Net for Compression of Biomedical Image Segmentation Networks.
Proceedings of the 58th ACM/IEEE Design Automation Conference, 2021

AGMI: Attention-Guided Multi-omics Integration for Drug Response Prediction with Graph Neural Networks.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2020
AntVis: A web-based visual analytics tool for exploring ant movement data.
Vis. Informatics, 2020

A Cross-Domain Metal Trace Restoring Network for Reducing X-Ray CT Metal Artifacts.
IEEE Trans. Medical Imaging, 2020

Globally Optimal Segmentation of Mutually Interacting Surfaces using Deep Learning.
CoRR, 2020

Cartilage Segmentation in High-Resolution 3D Micro-CT Images via Uncertainty-Guided Self-training with Very Sparse Annotation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Dual-Level Selective Transfer Learning for Intrahepatic Cholangiocarcinoma Segmentation in Non-enhanced Abdominal CT.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Doctor Imitator: A Graph-Based Bone Age Assessment Framework Using Hand Radiographs.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

A Fully 3D Cascaded Framework for Pancreas Segmentation.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

A Data-Aware Deep Supervised Method for Retinal Vessel Segmentation.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

SSN: A Stair-Shape Network for Real-Time Polyp Segmentation in Colonoscopy Images.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Visual Relationship Detection With A Deep Convolutional Relationship Network.
Proceedings of the IEEE International Conference on Image Processing, 2020

A Hierarchical Graph Network for 3D Object Detection on Point Clouds.
Proceedings of the 2020 IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2020

A Coarse-to-Fine Data Generation Method for 2D and 3D Cell Nucleus Segmentation.
Proceedings of the 33rd IEEE International Symposium on Computer-Based Medical Systems, 2020

InTracker: An Integrated Detector-Tracker Framework for Cell Detection and Tracking.
Proceedings of the 33rd IEEE International Symposium on Computer-Based Medical Systems, 2020

Unlabeled Data Guided Semi-supervised Histopathology Image Segmentation.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

Flow-Mixup: Classifying Multi-labeled Medical Images with Corrupted Labels.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

SSR-VFD: Spatial Super-Resolution for Vector Field Data Analysis and Visualization.
Proceedings of the 2020 IEEE Pacific Visualization Symposium, 2020

An Annotation Sparsification Strategy for 3D Medical Image Segmentation via Representative Selection and Self-Training.
Proceedings of the Thirty-Fourth AAAI Conference on Artificial Intelligence, 2020

2019
moDNN: Memory Optimal Deep Neural Network Training on Graphics Processing Units.
IEEE Trans. Parallel Distributed Syst., 2019

Flow Field Reduction Via Reconstructing Vector Data From 3-D Streamlines Using Deep Learning.
IEEE Computer Graphics and Applications, 2019

Computing L<sub>1</sub> Shortest Paths Among Polygonal Obstacles in the Plane.
Algorithmica, 2019

Nodule-Plus R-CNN and Deep Self-Paced Active Learning for 3D Instance Segmentation of Pulmonary Nodules.
IEEE Access, 2019

SPDA: Superpixel-based Data Augmentation for Biomedical Image Segmentation.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2019

HFA-Net: 3D Cardiovascular Image Segmentation with Asymmetrical Pooling and Content-Aware Fusion.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Decompose-and-Integrate Learning for Multi-class Segmentation in Medical Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

LSRC: A Long-Short Range Context-Fusing Framework for Automatic 3D Vertebra Localization.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Multi-view Learning with Feature Level Fusion for Cervical Dysplasia Diagnosis.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

CC-NET: Image Complexity Guided Network Compression for Biomedical Image Segmentation.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Cascade Decoder: A Universal Decoding Method For Biomedical Image Segmentation.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Multi-Modal Fusion Learning For Cervical Dysplasia Diagnosis.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

A New Ensemble Learning Framework for 3D Biomedical Image Segmentation.
Proceedings of the Thirty-Third AAAI Conference on Artificial Intelligence, 2019

Biomedical Image Segmentation via Representative Annotation.
Proceedings of the Thirty-Third AAAI Conference on Artificial Intelligence, 2019

2018
Online scheduling of moldable parallel tasks.
J. Sched., 2018

Inversion detection using PacBio long reads.
Int. J. Data Min. Bioinform., 2018

BoxNet: Deep Learning Based Biomedical Image Segmentation Using Boxes Only Annotation.
CoRR, 2018

Deep Learning Based Instance Segmentation in 3D Biomedical Images Using Weak Annotation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Deep Active Self-paced Learning for Accurate Pulmonary Nodule Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

A Framework for Identifying Diabetic Retinopathy Based on Anti-noise Detection and Attention-Based Fusion.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

A new registration approach for dynamic analysis of calcium signals in organs.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

moDNN: Memory optimal DNN training on GPUs.
Proceedings of the 2018 Design, Automation & Test in Europe Conference & Exhibition, 2018

Quantization of Fully Convolutional Networks for Accurate Biomedical Image Segmentation.
Proceedings of the 2018 IEEE Conference on Computer Vision and Pattern Recognition, 2018

Biomedical Image Segmentation Using Fully Convolutional Networks on TrueNorth.
Proceedings of the 31st IEEE International Symposium on Computer-Based Medical Systems, 2018

Predicting Local Inversions Using Rectangle Clustering and Representative Rectangle Prediction.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
On Clustering Induced Voronoi Diagrams.
SIAM J. Comput., 2017

Computing the Visibility Polygon of an Island in a Polygonal Domain.
Algorithmica, 2017

Deep Adversarial Networks for Biomedical Image Segmentation Utilizing Unannotated Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Suggestive Annotation: A Deep Active Learning Framework for Biomedical Image Segmentation.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Fast Background Removal Method for 3D Multi-channel Deep Tissue Fluorescence Imaging.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Neuron Segmentation Using Deep Complete Bipartite Networks.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2017, 2017

Optimizing Memory Efficiency for Convolution Kernels on Kepler GPUs.
Proceedings of the 54th Annual Design Automation Conference, 2017

2016
Sphere Packing Problem.
Encyclopedia of Algorithms, 2016

A Hybrid Approach for Segmentation and Tracking of Myxococcus Xanthus Swarms.
IEEE Trans. Medical Imaging, 2016

Iris Recognition Based on Human-Interpretable Features.
IEEE Trans. Inf. Forensics Secur., 2016

Shell: A Spatial Decomposition Data Structure for Ray Traversal on GPU.
IEEE Trans. Computers, 2016

A seeding-searching-ensemble method for gland segmentation in H&E-stained images.
BMC Medical Informatics Decis. Mak., 2016

Two-point L1 shortest path queries in the plane.
J. Comput. Geom., 2016

Matroid and Knapsack Center Problems.
Algorithmica, 2016

Combining Fully Convolutional and Recurrent Neural Networks for 3D Biomedical Image Segmentation.
Proceedings of the Advances in Neural Information Processing Systems 29: Annual Conference on Neural Information Processing Systems 2016, 2016

3D Segmentation of Glial Cells Using Fully Convolutional Networks and k-Terminal Cut.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

A Deep Learning Approach for Semantic Segmentation in Histology Tissue Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016, 2016

Segmentation and tracking of Pseudomonas aeruginosa for cell dynamics analysis in time-lapse images.
Proceedings of the 13th IEEE International Symposium on Biomedical Imaging, 2016

Single molecule sequencing-guided scaffolding and correction of draft assemblies.
Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016

Coarse-to-Fine Stacked Fully Convolutional Nets for lymph node segmentation in ultrasound images.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
Efficient algorithms for the one-dimensional k-center problem.
Theor. Comput. Sci., 2015

A circular matrix-merging algorithm with application in Volumetric Intensity-Modulated Arc Therapy.
Theor. Comput. Sci., 2015

Computing Shortest Paths among Curved Obstacles in the Plane.
ACM Trans. Algorithms, 2015

A new algorithm for computing visibility graphs of polygonal obstacles in the plane.
J. Comput. Geom., 2015

Packing cubes into a cube is NP-complete in the strong sense.
J. Comb. Optim., 2015

Computing maximum non-crossing matching in convex bipartite graphs.
Discret. Appl. Math., 2015

Weak visibility queries of line segments in simple polygons.
Comput. Geom., 2015

Visibility and ray shooting queries in polygonal domains.
Comput. Geom., 2015

A two-layer structure prediction framework for microscopy cell detection.
Comput. Medical Imaging Graph., 2015

Optimal Point Movement for Covering Circular Regions.
Algorithmica, 2015

Segmentation of vascular structures and hematopoietic cells in 3D microscopy images and quantitative analysis.
Proceedings of the Medical Imaging 2015: Image Processing, 2015

Fast Background Removal in 3D Fluorescence Microscopy Images Using One-Class Learning.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

Neutrophils Identification by Deep Learning and Voronoi Diagram of Clusters.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

Detection of Glands and Villi by Collaboration of Domain Knowledge and Deep Learning.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

A Hybrid Approach for Segmentation and Tracking of Myxococcus Xanthus Swarms.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015 - 18th International Conference Munich, Germany, October 5, 2015

Segmenting subcellular structures in histology tissue images.
Proceedings of the 12th IEEE International Symposium on Biomedical Imaging, 2015

An optimization-based approach for restoring missing structures and textures in images.
Proceedings of the 2015 IEEE International Conference on Image Processing, 2015

Monte Carlo Based Ray Tracing in CPU-GPU Heterogeneous Systems and Applications in Radiation Therapy.
Proceedings of the 24th International Symposium on High-Performance Parallel and Distributed Computing, 2015

Packing Cubes into a Cube in (D>3)-Dimensions.
Proceedings of the Computing and Combinatorics - 21st International Conference, 2015

A seeding-searching-ensemble method for gland segmentation and detection.
Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014
Two-Point L<sub>1</sub> Shortest Path Queries in the Plane.
CoRR, 2014

Outlier Respecting Points Approximation.
Algorithmica, 2014

New Algorithms for Facility Location Problems on the Real Line.
Algorithmica, 2014

Identifying Neutrophils in H&E Staining Histology Tissue Images.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

A Matching Model Based on Earth Mover's Distance for Tracking Myxococcus Xanthus.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

A Circular Matrix-Merging Algorithm with Application in VMAT Radiation Therapy.
Proceedings of the Frontiers in Algorithmics - 8th International Workshop, 2014

An Automated Approach for Fibrin Network Segmentation and Structure Identification in 3D Confocal Microscopy Images.
Proceedings of the 2014 IEEE 27th International Symposium on Computer-Based Medical Systems, 2014

2013
Optimal Graph Search Based Segmentation of Airway Tree Double Surfaces Across Bifurcations.
IEEE Trans. Medical Imaging, 2013

GPU-optimized volume ray tracing for massive numbers of rays in radiotherapy.
ACM Trans. Embed. Comput. Syst., 2013

Accelerating radiation dose calculation: A multi-FPGA solution.
ACM Trans. Embed. Comput. Syst., 2013

Algorithms for interval structures with applications.
Theor. Comput. Sci., 2013

Computing Shortest Paths amid Convex Pseudodisks.
SIAM J. Comput., 2013

The topology aware file distribution problem.
J. Comb. Optim., 2013

A note on searching line arrangements and applications.
Inf. Process. Lett., 2013

Algorithms on Minimizing the Maximum Sensor Movement for Barrier Coverage of a Linear Domain.
Discret. Comput. Geom., 2013

Efficient Algorithms for One-Dimensional k-Center Problems
CoRR, 2013

Approximating Points by a Piecewise Linear Function.
Algorithmica, 2013

L_1 Shortest Path Queries among Polygonal Obstacles in the Plane.
Proceedings of the 30th International Symposium on Theoretical Aspects of Computer Science, 2013

Shell: A Spatial Decomposition Data Structure for 3D Curve Traversal on Many-Core Architectures.
Proceedings of the Algorithms - ESA 2013, 2013

Packing Cubes into a Cube Is NP-Hard in the Strong Sense.
Proceedings of the Computing and Combinatorics, 19th International Conference, 2013

GPU acceleration of Data Assembly in Finite Element Methods and its energy implications.
Proceedings of the 24th International Conference on Application-Specific Systems, 2013

2012
Energy Minimization for Multiprocessor Systems Executing Real-Time Tasks.
Proceedings of the Handbook of Energy-Aware and Green Computing - Two Volume Set., 2012

Computing feasible toolpaths for 5-axis machines.
Theor. Comput. Sci., 2012

Flattening topologically spherical surface.
J. Comb. Optim., 2012

Locating an obnoxious Line among Planar Objects.
Int. J. Comput. Geom. Appl., 2012

Fitting a Step Function to a Point Set with Outliers Based on Simplicial thickness Data Structures.
Int. J. Comput. Geom. Appl., 2012

Computing L1 Shortest Paths among Polygonal Obstacles in the Plane
CoRR, 2012

An improved algorithm for reconstructing a simple polygon from its visibility angles.
Comput. Geom., 2012

Automatic segmentation and analysis of fibrin networks in 3D confocal microscopy images.
Proceedings of the Medical Imaging 2012: Image Processing, 2012

Detecting and Tracking Motion of Myxococcus xanthus Bacteria in Swarms.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2012, 2012

2011
Online rectangle filling.
Theor. Comput. Sci., 2011

Improved algorithms for path partition and related problems.
Oper. Res. Lett., 2011

New algorithms for online rectangle filling with <i>k</i>-lookahead.
J. Comb. Optim., 2011

Processing an Offline Insertion-Query Sequence with Applications.
Int. J. Found. Comput. Sci., 2011

Free-Form Surface Partition in 3-d.
Int. J. Comput. Geom. Appl., 2011

Representing a Functional Curve by Curves with Fewer Peaks.
Discret. Comput. Geom., 2011

Coupled Path Planning, Region Optimization, and Applications in Intensity-modulated Radiation Therapy.
Algorithmica, 2011

A New Algorithm for a Field Splitting Problem in Intensity-Modulated Radiation Therapy.
Algorithmica, 2011

Shape Rectangularization Problems in Intensity-Modulated Radiation Therapy.
Algorithmica, 2011

New Algorithms for 1-D Facility Location and Path Equipartition Problems.
Proceedings of the Algorithms and Data Structures - 12th International Symposium, 2011

Computing Shortest Paths amid Pseudodisks.
Proceedings of the Twenty-Second Annual ACM-SIAM Symposium on Discrete Algorithms, 2011

Memory-efficient volume ray tracing on GPU for radiotherapy.
Proceedings of the IEEE 9th Symposium on Application Specific Processors, 2011

Segmentation of knee joints in x-ray images using decomposition-based sweeping and graph search.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Identification and classification of cells in multispectral microscopy images of lymph nodes.
Proceedings of the Medical Imaging 2011: Image Processing, 2011

Collapsed-cone based deformation field regularization for nonrigid image registration.
Proceedings of the 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2011

An Improved Algorithm for Reconstructing a Simple Polygon from the Visibility Angles.
Proceedings of the Algorithms and Computation - 22nd International Symposium, 2011

Efficient Algorithms for the Weighted k-Center Problem on a Real Line.
Proceedings of the Algorithms and Computation - 22nd International Symposium, 2011

A Nearly Optimal Algorithm for Finding L 1 Shortest Paths among Polygonal Obstacles in the Plane.
Proceedings of the Algorithms - ESA 2011, 2011

2010
Finding Many Optimal Paths without Growing any Optimal Path Trees.
Int. J. Comput. Geom. Appl., 2010

Segmentation, Reconstruction, and Analysis of Blood Thrombus Formation in 3D 2-Photon Microscopy Images.
EURASIP J. Adv. Signal Process., 2010

Densest <i>k</i>-Subgraph Approximation on Intersection Graphs.
Proceedings of the Approximation and Online Algorithms - 8th International Workshop, 2010

Improved Points Approximation Algorithms Based on Simplicial Thickness Data Structures.
Proceedings of the Combinatorial Algorithms - 21st International Workshop, 2010

Computing Toolpaths for 5-Axis NC Machines.
Proceedings of the Combinatorial Optimization and Applications, 2010

2009
Geometric Algorithms for the Constrained 1-d k-Means Clustering Problems and IMRT Applications.
Int. J. Found. Comput. Sci., 2009

Editors' Foreword.
Int. J. Comput. Geom. Appl., 2009

Guest Editors' Forward.
Algorithmica, 2009

A multi-FPGA accelerator for radiation dose calculation in cancer treatment.
Proceedings of the IEEE 7th Symposium on Application Specific Processors, 2009

Optimal graph search based image segmentation for objects with complex topologies.
Proceedings of the Medical Imaging 2009: Image Processing, 2009

Approximating Points by a Piecewise Linear Function: II. Dealing with Outliers.
Proceedings of the Algorithms and Computation, 20th International Symposium, 2009

Approximating Points by a Piecewise Linear Function: I.
Proceedings of the Algorithms and Computation, 20th International Symposium, 2009

Segmentation, reconstruction, and analysis of blood thrombi in 2-photon microscopy images.
Proceedings of the Twenty-Second IEEE International Symposium on Computer-Based Medical Systems, 2009

2008
Sphere Packing Problem.
Proceedings of the Encyclopedia of Algorithms - 2008 Edition, 2008

Mountain Reduction, Block Matching, and Applications in Intensity-Modulated Radiation Therapy.
Int. J. Comput. Geom. Appl., 2008

Optimal Field Splitting, with Applications in Intensity-Modulated Radiation Therapy.
Proceedings of the Frontiers in Algorithmics, Second Annual International Workshop, 2008

Optimal Surface Flattening.
Proceedings of the Frontiers in Algorithmics, Second Annual International Workshop, 2008

Stabbing Convex Polygons with a Segment or a Polygon.
Proceedings of the Algorithms, 2008

New Algorithms for Online Rectangle Filling with k-Lookahead.
Proceedings of the Computing and Combinatorics, 14th Annual International Conference, 2008

2007
Sphere Packing and Medical Applications.
Proceedings of the Handbook of Approximation Algorithms and Metaheuristics., 2007

Predicting Protein-Protein Interactions from Protein Domains Using a Set Cover Approach.
IEEE ACM Trans. Comput. Biol. Bioinform., 2007

Fabricatable Interconnect and Molecular QCA Circuits.
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2007

The Layered Net Surface Problems in Discrete Geometry and Medical Image Segmentation.
Int. J. Comput. Geom. Appl., 2007

Approximating the Maximum Sharing Problem.
Proceedings of the Algorithms and Data Structures, 10th International Workshop, 2007

Density-Based Data Clustering Algorithms for Lower Dimensions Using Space-Filling Curves.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2007

Geometric Algorithms for the Constrained 1-D <i>K</i> -Means Clustering Problems and IMRT Applications.
Proceedings of the Frontiers in Algorithmics, First Annual International Workshop, 2007

A New Field Splitting Algorithm for Intensity-Modulated Radiation Therapy.
Proceedings of the Computing and Combinatorics, 13th Annual International Conference, 2007

Hardware Acceleration for 3-D Radiation Dose Calculation.
Proceedings of the IEEE International Conference on Application-Specific Systems, 2007

2006
Optimal Surface Segmentation in Volumetric Images-A Graph-Theoretic Approach.
IEEE Trans. Pattern Anal. Mach. Intell., 2006

Construction of the nearest neighbor embracing graph of a point set.
J. Comb. Optim., 2006

Two flow network simplification algorithms.
Inf. Process. Lett., 2006

Minimum Area Convex Packing of Two Convex Polygons.
Int. J. Comput. Geom. Appl., 2006

Generalized Geometric Approaches for Leaf Sequencing Problems in Radiation Therapy.
Int. J. Comput. Geom. Appl., 2006

Field Splitting Problems in Intensity-Modulated Radiation Therapy.
Proceedings of the Algorithms and Computation, 17th International Symposium, 2006

Shape Rectangularization Problems in Intensity-Modulated Radiation Therapy.
Proceedings of the Algorithms and Computation, 17th International Symposium, 2006

On Approximating the Maximum Simple Sharing Problem.
Proceedings of the Algorithms and Computation, 17th International Symposium, 2006

An FPGA Solution for Radiation Dose Calculation.
Proceedings of the 14th IEEE Symposium on Field-Programmable Custom Computing Machines (FCCM 2006), 2006

Traversing the Machining Graph.
Proceedings of the Algorithms, 2006

A Leaf Sequencing Software for Intensity-Modulated Radiation Therapy.
Proceedings of the 19th IEEE International Symposium on Computer-Based Medical Systems (CBMS 2006), 2006

2005
Efficient Algorithms and Implementations for Optimizing the Sum of Linear Fractional Functions, with Applications.
J. Comb. Optim., 2005

Geometric Algorithms for Density-based Data Clustering.
Int. J. Comput. Geom. Appl., 2005

Polygonal path simplification with angle constraints.
Comput. Geom., 2005

Optimal Terrain Construction Problems and Applications in Intensity-Modulated Radiation Therapy.
Algorithmica, 2005

Simultaneous Segmentation of Multiple Closed Surfaces Using Optimal Graph Searching.
Proceedings of the Information Processing in Medical Imaging, 2005

Eliminating wire crossings for molecular quantum-dot cellular automata implementation.
Proceedings of the 2005 International Conference on Computer-Aided Design, 2005

Mountain reduction, block matching, and applications in intensity-modulated radiation therapy.
Proceedings of the 21st ACM Symposium on Computational Geometry, 2005

Efficient Algorithms for Simplifying Flow Networks.
Proceedings of the Computing and Combinatorics, 11th Annual International Conference, 2005

2004
Efficient approximation algorithms for pairwise data clustering and applications.
Int. J. Comput. Geom. Appl., 2004

Geometric algorithms for static leaf sequencing problems in radiation therapy.
Int. J. Comput. Geom. Appl., 2004

Geometric permutations of higher dimensional spheres.
Comput. Geom., 2004

Efficient Algorithms for k-Terminal Cuts on Planar Graphs.
Algorithmica, 2004

Quantum-Dot Cellular Automata (QCA) circuit partitioning: problem modeling and solutions.
Proceedings of the 41th Design Automation Conference, 2004

Globally Optimal Segmentation of Interacting Surfaces with Geometric Constraints.
Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR 2004), with CD-ROM, 27 June, 2004

Approximation Algorithms for Multicommodity Flow and Normalized Cut Problems: Implementations and Experimental Study.
Proceedings of the Computing and Combinatorics, 10th Annual International Conference, 2004

Efficient Algorithms for Approximating a Multi-dimensional Voxel Terrain by a Unimodal Terrain.
Proceedings of the Computing and Combinatorics, 10th Annual International Conference, 2004

Optimizing The Lazy DFA Approach for XML Stream Processing.
Proceedings of the Database Technologies 2004, 2004

2003
Computing Optimal Beams in Two and Three Dimensions.
J. Comb. Optim., 2003

Finding an optimal path without growing the tree.
J. Algorithms, 2003

Topological Peeling and Applications.
Int. J. Comput. Geom. Appl., 2003

Space-Efficient Algorithms for Approximating Polygonal Curves in Two-Dimensional Space.
Int. J. Comput. Geom. Appl., 2003

Efficient Parallel Algorithms for Planar <i>st</i>-Graphs.
Algorithmica, 2003

Pairwise Data Clustering and Applications.
Proceedings of the Computing and Combinatorics, 9th Annual International Conference, 2003

Geometric Algorithms for Agglomerative Hierarchical Clustering.
Proceedings of the Computing and Combinatorics, 9th Annual International Conference, 2003

Energy minimization of real-time tasks on variable voltage processors with transition energy overhead.
Proceedings of the 2003 Asia and South Pacific Design Automation Conference, 2003

2002
Efficient global register allocation for minimizing energy consumption.
ACM SIGPLAN Notices, 2002

Cell selection from technology libraries for minimizing power.
Integr., 2002

Image Segmentation with Asteroidality/Tubularity and Smoothness Constraints.
Int. J. Comput. Geom. Appl., 2002

Optimal Polygon Cover Problems and Applications.
Int. J. Comput. Geom. Appl., 2002

Two-variable linear programming in parallel.
Comput. Geom., 2002

Efficiently Approximating Polygonal Paths in Three and Higher Dimensions.
Algorithmica, 2002

Optimal Net Surface Problems with Applications.
Proceedings of the Automata, Languages and Programming, 29th International Colloquium, 2002

Task scheduling and voltage selection for energy minimization.
Proceedings of the 39th Design Automation Conference, 2002

An Experimental Study and Comparison of Topological Peeling and Topological Walk.
Proceedings of the Computing and Combinatorics, 8th Annual International Conference, 2002

2001
Efficient list-approximation techniques for floorplan area minimization.
ACM Trans. Design Autom. Electr. Syst., 2001

Determining an Optimal Penetration Among Weighted Regions in Two and Three Dimensions.
J. Comb. Optim., 2001

On Geometric Path Query Problems.
Int. J. Comput. Geom. Appl., 2001

On Connecting Red and Blue Rectilinear Polygonal Obstacles with Nonintersecting Monotone Rectilinear Paths.
Int. J. Comput. Geom. Appl., 2001

Efficient Algorithms for Optimization-Based Image Segmentation.
Int. J. Comput. Geom. Appl., 2001

Lower bounds for computing geometric spanners and approximate shortest paths.
Discret. Appl. Math., 2001

An efficient direct approach for computing shortest rectilinear paths among obstacles in a two-layer interconnection model.
Comput. Geom., 2001

Geometric permutations of high dimensional spheres.
Proceedings of the Twelfth Annual Symposium on Discrete Algorithms, 2001

Polygonal path approximation with angle constraints.
Proceedings of the Twelfth Annual Symposium on Discrete Algorithms, 2001

Image Segmentation with Monotonicity and Smoothness Constraints.
Proceedings of the Algorithms and Computation, 12th International Symposium, 2001

Topological Peeling and Implementation.
Proceedings of the Algorithms and Computation, 12th International Symposium, 2001

Algorithms for congruent sphere packing and applications.
Proceedings of the Seventeenth Annual Symposium on Computational Geometry, 2001

Maximum Red/Blue Interval Matching with Applications.
Proceedings of the Computing and Combinatorics, 7th Annual International Conference, 2001

2000
Shortest Path Queries Among Weighted Obstacles in the Rectilinear Plane.
SIAM J. Comput., 2000

Parallel Algorithms for Partitioning Sorted Sets and Related Problems.
Algorithmica, 2000

Parallel Algorithms for Maximum Matching in Complements of Interval Graphs and Related Problems.
Algorithmica, 2000

Shortest path queries in planar graphs.
Proceedings of the Thirty-Second Annual ACM Symposium on Theory of Computing, 2000

Optimizing the sum of linear fractional functions and applications.
Proceedings of the Eleventh Annual ACM-SIAM Symposium on Discrete Algorithms, 2000

A new algorithm and simulation for computing optimal paths in a dynamic and weighted 2-D environment.
Proceedings of the IEEE International Conference on Systems, 2000

Optimal Beam Penetrations in Two and Three Dimensions.
Proceedings of the Algorithms and Computation, 11th International Conference, 2000

Optimal Polygon Cover Problems and Applcations.
Proceedings of the Algorithms and Computation, 11th International Conference, 2000

Determining optimal paths in a weighted and dynamic 2D environment using framed-octrees.
Proceedings of the Fourth International Conference on Autonomous Agents, 2000

Deterministic Parallel Computational Geometry.
Proceedings of the Handbook of Computational Geometry, 2000

1999
Parallel Algorithms for Longest Increasing Chains in the Plane and Related Problems.
Parallel Process. Lett., 1999

Skew Voronoi Diagrams.
Int. J. Comput. Geom. Appl., 1999

Global register allocation for minimizing energy consumption.
Proceedings of the 1999 International Symposium on Low Power Electronics and Design, 1999

Low energy register allocation beyond basic blocks.
Proceedings of the 1999 International Symposium on Circuits and Systems, ISCAS 1999, Orlando, Florida, USA, May 30, 1999

1998
Solving the all-pair shortest path query problem on interval and circular-arc graphs.
Networks, 1998

Maintaining Visibility of a Polygon with a Moving Point of View.
Inf. Process. Lett., 1998

Planning Shortest Paths among 2D and 3D Weighted Regions Using Framed-Subspaces.
Int. J. Robotics Res., 1998

Finding the Convex Hull of Discs in Parallel.
Int. J. Comput. Geom. Appl., 1998

Determining Weak Visibility of a Polygon from an Edge in Parallel.
Int. J. Comput. Geom. Appl., 1998

Parallel Geometric Algorithms in Coarse-Grain Network Models.
Proceedings of the Computing and Combinatorics, 4th Annual International Conference, 1998

1997
A framed-quadtree approach for determining Euclidean shortest paths in a 2-D environment.
IEEE Trans. Robotics Autom., 1997

Scheduling for power reduction in a real-time system.
Proceedings of the 1997 International Symposium on Low Power Electronics and Design, 1997

Voronoi Diagrams for Direction-Sensitive Distances.
Proceedings of the Thirteenth Annual Symposium on Computational Geometry, 1997

1996
Fast and Efficient Operations on Parallel Priority Queues.
Parallel Process. Lett., 1996

Optimally Computing the Shortest Weakly Visible Subedge of a Simple Polygon.
J. Algorithms, 1996

Erratum: Rectilinear Short Path Queries Among Rectangular Obstacles.
Inf. Process. Lett., 1996

Rectilinear Short Path Queries Among Rectangular Obstacles.
Inf. Process. Lett., 1996

Developing Algorithms and Software for Geometric Path Planning Problems.
ACM Comput. Surv., 1996

Polynomial-Time Solutions to Image Segmentation.
Proceedings of the Seventh Annual ACM-SIAM Symposium on Discrete Algorithms, 1996

Applications of a Numbering Scheme for Polygonal Obstacles in the Plane.
Proceedings of the Algorithms and Computation, 7th International Symposium, 1996

Planar Spanners and Approximate Shortest Path Queries among Obstacles in the Plane.
Proceedings of the Algorithms, 1996

Efficient Approximation Algorithms for Floorplan Area Minimization.
Proceedings of the 33st Conference on Design Automation, 1996

1995
Efficient Parallel Binary Search on Sorted Arrays, with Applications.
IEEE Trans. Parallel Distributed Syst., 1995

Efficient Geometric Algorithms on the EREW PRAM.
IEEE Trans. Parallel Distributed Syst., 1995

Optimal Parallel Hypercube Algorithms for Polygon Problems.
IEEE Trans. Computers, 1995

An optimal parallel algorithm for detecting weak visibility of a simple polygon.
Int. J. Comput. Geom. Appl., 1995

Computing the all-pairs longest chains in the plane.
Int. J. Comput. Geom. Appl., 1995

An Optimal Algorithm for Shortest Paths on Weighted Interval and Circular-Arc Graphs, with Applications.
Algorithmica, 1995

Weighted selection on coarse-grain hypercubes.
Proceedings of the Seventh IEEE Symposium on Parallel and Distributed Processing, 1995

On the All-Pairs Euclidean Short Path Problem.
Proceedings of the Sixth Annual ACM-SIAM Symposium on Discrete Algorithms, 1995

Planning conditional shortest paths through an unknown environment: a framed-quadtree approach.
Proceedings of IEEE/RSJ International Conference on Intelligent Robots and Systems, 1995

Parallel algorithms for maximum matching in interval graphs.
Proceedings of IPPS '95, 1995

Optimal guarding of polygons and monotone chains.
Proceedings of the 7th Canadian Conference on Computational Geometry, 1995

1994
Solving the All-Pair Shortest Path Problem on Interval and Circular-Arc Graphs.
Proceedings of the 8th International Symposium on Parallel Processing, 1994

Determining Weak External Visibility of Polygons in Parallel.
Proceedings of the 6th Canadian Conference on Computational Geometry, 1994

1993
Testing a Simple Polygon for Monotonicity Optimally in Parallel.
Inf. Process. Lett., 1993

On Parallel Rectilinear Obstacle- Avoiding Paths.
Comput. Geom., 1993

Computing the All-Pairs Longest Chain in the Plane.
Proceedings of the Algorithms and Data Structures, Third Workshop, 1993

Testing a Simple Polygon for Monotonicity Optimality in Parallel.
Proceedings of the Seventh International Parallel Processing Symposium, 1993

1991
An Optimal Parallel Algorithm for the Visibility of a Simple Polygon from a Point.
J. ACM, 1991

Parallel Rectilinear Shortest Paths with Rectangular Obstacles.
Comput. Geom., 1991

1989
An Optimal Parallel Algorithm for the Minimum Circle-Cover Problem.
Inf. Process. Lett., 1989

Optimal Parallel Algorithm for Visibility of a Simple Polygon from a Point.
Proceedings of the Fifth Annual Symposium on Computational Geometry, 1989


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