Antonio Jimeno-Yepes
Orcid: 0000-0002-6581-094XAffiliations:
- IBM Research, Melbourne, Australia
According to our database1,
Antonio Jimeno-Yepes
authored at least 123 papers
between 2005 and 2024.
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Bibliography
2024
2023
Classifying literature mentions of biological pathogens as experimentally studied using natural language processing.
J. Biomed. Semant., December, 2023
Hypergraph Convolutional Networks for Fine-grained ICU Patient Similarity Analysis and Risk Prediction.
CoRR, 2023
Findings of the WMT 2023 Biomedical Translation Shared Task: Evaluation of ChatGPT 3.5 as a Comparison System.
Proceedings of the Eighth Conference on Machine Translation, 2023
Contrastive Learning-Based Imputation-Prediction Networks for In-hospital Mortality Risk Modeling Using EHRs.
Proceedings of the Machine Learning and Knowledge Discovery in Databases: Applied Data Science and Demo Track, 2023
Class Specific Feature Disentanglement and Text Embeddings for Multi-label Generalized Zero Shot CXR Classification.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023
Stacked Attention-based Networks for Accurate and Interpretable Health Risk Prediction.
Proceedings of the International Joint Conference on Neural Networks, 2023
2022
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.
CoRR, 2022
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations.
Database J. Biol. Databases Curation, 2022
Findings of the WMT 2022 Biomedical Translation Shared Task: Monolingual Clinical Case Reports.
Proceedings of the Seventh Conference on Machine Translation, 2022
The READ-BioMed Team in LivingNER Task 1 (2022): Adaptation of an English Annotation System to Spanish.
Proceedings of the Iberian Languages Evaluation Forum (IberLEF 2022) co-located with the Conference of the Spanish Society for Natural Language Processing (SEPLN 2022), 2022
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2022, 2022
Proceedings of The Seventh Workshop on Social Media Mining for Health Applications, 2022
Integrated Convolutional and Recurrent Neural Networks for Health Risk Prediction using Patient Journey Data with Many Missing Values.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022
Modeling long-term dependencies and short-term correlations in patient journey data with temporal attention networks for health prediction.
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022
Distinguishing between focus and background entities in biomedical corpora using discourse structure and transformers.
Proceedings of the 13th International Workshop on Health Text Mining and Information Analysis, 2022
2021
CoRR, 2021
CoRR, 2021
A representation model for biological entities by fusing structured axioms with unstructured texts.
Bioinform., 2021
Findings of the WMT 2021 Biomedical Translation Shared Task: Summaries of Animal Experiments as New Test Set.
Proceedings of the Sixth Conference on Machine Translation, 2021
Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2021
Proceedings of the 9th IEEE International Conference on Healthcare Informatics, 2021
Proceedings of the 16th International Conference on Document Analysis and Recognition, 2021
Brief Description of COVID-SEE: The Scientific Evidence Explorer for COVID-19 Related Research.
Proceedings of the Advances in Information Retrieval, 2021
2020
J. Biomed. Informatics, 2020
Elephant in the Room: An Evaluation Framework for Assessing Adversarial Examples in NLP.
CoRR, 2020
BioNorm: deep learning-based event normalization for the curation of reaction databases.
Bioinform., 2020
Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages.
Proceedings of the Fifth Conference on Machine Translation, 2020
MEDLINE as a Parallel Corpus: a Survey to Gain Insight on French-, Spanish- and Portuguese-speaking Authors' Abstract Writing Practice.
Proceedings of The 12th Language Resources and Evaluation Conference, 2020
Forget Me Not: Reducing Catastrophic Forgetting for Domain Adaptation in Reading Comprehension.
Proceedings of the 2020 International Joint Conference on Neural Networks, 2020
Proceedings of the Computer Vision - ECCV 2020, 2020
Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, 2020
Prediction of secondary structure population and intrinsic disorder of proteins using multitask deep learning.
Proceedings of the AMIA 2020, 2020
2019
Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies.
Proceedings of the Fourth Conference on Machine Translation, 2019
Proceedings of the 2019 International Conference on Document Analysis and Recognition, 2019
Proceedings of the AMIA 2019, 2019
2018
IEEE Geosci. Remote. Sens. Lett., 2018
Confidence penalty, annealing Gaussian noise and zoneout for biLSTM-CRF networks for named entity recognition.
CoRR, 2018
Findings of the WMT 2018 Biomedical Translation Shared Task: Evaluation on Medline test sets.
Proceedings of the Third Conference on Machine Translation: Shared Task Papers, 2018
Proceedings of the Eleventh International Conference on Language Resources and Evaluation, 2018
Proceedings of the 5th Spanish Conference on Information Retrieval, 2018
A hybrid approach for automated mutation annotation of the extended human mutation landscape in scientific literature.
Proceedings of the AMIA 2018, 2018
2017
Word embeddings and recurrent neural networks based on Long-Short Term Memory nodes in supervised biomedical word sense disambiguation.
J. Biomed. Informatics, 2017
Neural-network-based analysis of EEG data using the neuromorphic TrueNorth chip for brain-machine interfaces.
IBM J. Res. Dev., 2017
Proceedings of the Second Conference on Machine Translation, 2017
Proceedings of the Eighth International Joint Conference on Natural Language Processing, 2017
Improving Classification Accuracy of Feedforward Neural Networks for Spiking Neuromorphic Chips.
Proceedings of the Twenty-Sixth International Joint Conference on Artificial Intelligence, 2017
Proceedings of the 17th IEEE International Conference on Bioinformatics and Bioengineering, 2017
Proceedings of the AMIA 2017, 2017
2016
Knowledge-Based Biomedical Word Sense Disambiguation with Neural Concept Embeddings and Distant Supervision.
CoRR, 2016
Improving energy efficiency and classification accuracy of neuromorphic chips by learning binary synaptic crossbars.
CoRR, 2016
Higher order features and recurrent neural networks based on Long-Short Term Memory nodes in supervised biomedical word sense disambiguation.
CoRR, 2016
Proceedings of the First Conference on Machine Translation, 2016
Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016
Proceedings of the 2016 International Joint Conference on Neural Networks, 2016
Proceedings of the ACM International Conference on Computing Frontiers, CF'16, 2016
Proceedings of the Australasian Language Technology Association Workshop 2016, Melbourne, Australia, December 5, 2016
Proceedings of the Australasian Language Technology Association Workshop 2016, Melbourne, Australia, December 5, 2016
Proceedings of the Australasian Language Technology Association Workshop 2016, Melbourne, Australia, December 5, 2016
2015
Knowledge based word-concept model estimation and refinement for biomedical text mining.
J. Biomed. Informatics, 2015
BMC Bioinform., 2015
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015
Proceedings of the ACM Ninth International Workshop on Data and Text Mining in Biomedical Informatics, 2015
Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015
2014
Mutation extraction tools can be combined for robust recognition of genetic variants in the literature.
F1000Research, 2014
Literature mining of genetic variants for curation: quantifying the importance of supplementary material.
Database J. Biol. Databases Curation, 2014
Proceedings of the Australasian Language Technology Association Workshop, 2014
Proceedings of the Australasian Language Technology Association Workshop, 2014
2013
Combining MEDLINE and publisher data to create parallel corpora for the automatic translation of biomedical text.
BMC Bioinform., 2013
Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources.
J. Biomed. Semant., 2013
Database J. Biol. Databases Curation, 2013
Database J. Biol. Databases Curation, 2013
Multilingual Semantic Resources and Parallel Corpora in the Biomedical Domain: the CLEF-ER Challenge.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013
Entity Recognition in Parallel Multi-lingual Biomedical Corpora: The CLEF-ER Laboratory Overview.
Proceedings of the Information Access Evaluation. Multilinguality, Multimodality, and Visualization, 2013
Proceedings of the first Workshop on Bio-Medical Semantic Indexing and Question Answering, 2013
An Evaluation of the Concept Retrieval Annotation for Spanish-English CLEFER Parallel Corpora.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013
Proceedings of the Information Access Evaluation. Multilinguality, Multimodality, and Visualization, 2013
Proceedings of the first Workshop on Bio-Medical Semantic Indexing and Question Answering, 2013
Extracting Biomedical Events and Modifications Using Subgraph Matching with Noisy Training Data.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013
Using the Argumentative Structure of Scientific Literature to Improve Information Access.
Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, 2013
Proceedings of the AMIA 2013, 2013
Proceedings of the Australasian Language Technology Association Workshop, 2013
2012
A One-Size-Fits-All Indexing Method Does Not Exist: Automatic Selection Based on Meta-Learning.
J. Comput. Sci. Eng., 2012
Proceedings of The Twenty-First Text REtrieval Conference, 2012
Disambiguating automatically-generated semantic annotations for Life Science open registries.
Proceedings of the 2nd International Workshop on Exploiting Large Knowledge Repositories, 2012
Proceedings of the ACM International Health Informatics Symposium, 2012
Knowledge-based and knowledge-lean methods combined in unsupervised word sense disambiguation.
Proceedings of the ACM International Health Informatics Symposium, 2012
Proceedings of the Information Retrieval and Knowledge Discovery in Biomedical Text, 2012
2011
Studying the correlation between different word sense disambiguation methods and summarization effectiveness in biomedical texts.
BMC Bioinform., 2011
BMC Bioinform., 2011
Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation.
BMC Bioinform., 2011
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.
J. Biomed. Semant., 2011
Proceedings of The Twentieth Text REtrieval Conference, 2011
Preliminary Results for Biomedical Word Sense Disambiguation Based on Semantic Clustering.
Proceedings of the 2011 Database and Expert Systems Applications, 2011
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011
2010
Improving an automatically extracted corpus for UMLS Metathesaurus word sense disambiguation.
Proces. del Leng. Natural, 2010
Measuring prediction capacity of individual verbs for the identification of protein interactions.
J. Biomed. Informatics, 2010
BMC Bioinform., 2010
The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers.
Proceedings of the International Conference on Language Resources and Evaluation, 2010
Query Expansion for UMLS Metathesaurus Disambiguation Based on Automatic Corpus Extraction.
Proceedings of the Ninth International Conference on Machine Learning and Applications, 2010
Proceedings of the Ontology Theory, Management and Design - Advanced Tools and Models., 2010
2009
PhD thesis, 2009
Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb.
BMC Bioinform., 2009
Reuse of terminological resources for efficient ontological engineering in Life Sciences.
BMC Bioinform., 2009
Proceedings of the Information Retrieval in Biomedicine, 2009
2008
Combining Evidence, Specificity, and Proximity towards the Normalization of Gene Ontology Terms in Text.
EURASIP J. Bioinform. Syst. Biol., 2008
BMC Bioinform., 2008
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008
2007
Proceedings of The Sixteenth Text REtrieval Conference, 2007
2006
Proceedings of the Fifteenth Text REtrieval Conference, 2006
2005
Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot.
BMC Bioinform., 2005