Thomas J. Fuchs

Orcid: 0000-0001-7603-8687

Affiliations:
  • Hasso Plattner Institute for Digital Health at Mount Sinai, USA
  • Memorial Sloan Kettering Cancer Center, New York, NY, USA (former)
  • California Institute of Technology, Jet Propulsion Laboratory, Pasadena, CA, USA (former)
  • ETH Zurich, Department of Computer Science, Switzerland (former)


According to our database1, Thomas J. Fuchs authored at least 58 papers between 2008 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2024
Beyond Multiple Instance Learning: Full Resolution All-In-Memory End-To-End Pathology Slide Modeling.
CoRR, 2024

2023
Keyword-optimized Template Insertion for Clinical Information Extraction via Prompt-based Learning.
CoRR, 2023

Computational Pathology at Health System Scale - Self-Supervised Foundation Models from Three Billion Images.
CoRR, 2023

Virchow: A Million-Slide Digital Pathology Foundation Model.
CoRR, 2023

Joint Breast Neoplasm Detection and Subtyping using Multi-Resolution Network Trained on Large-Scale H&E Whole Slide Images with Weak Labels.
Proceedings of the Medical Imaging with Deep Learning, 2023

2022
Deep conditional transformation models for survival analysis.
CoRR, 2022

Deep Learning-Based Objective and Reproducible Osteosarcoma Chemotherapy Response Assessment and Outcome Prediction.
CoRR, 2022

H&E-based Computational Biomarker Enables Universal EGFR Screening for Lung Adenocarcinoma.
CoRR, 2022

Deep Interactive Learning-based ovarian cancer segmentation of H&E-stained whole slide images to study morphological patterns of BRCA mutation.
CoRR, 2022

2021
Integrated digital pathology at scale: A solution for clinical diagnostics and cancer research at a large academic medical center.
J. Am. Medical Informatics Assoc., 2021

EPIC-Survival: End-to-end Part Inferred Clustering for Survival Analysis, Featuring Prognostic Stratification Boosting.
CoRR, 2021

Deep Multi-Magnification Networks for multi-class breast cancer image segmentation.
Comput. Medical Imaging Graph., 2021

EPIC-Survival: End-to-end Part Inferred Clustering for Survival Analysis, with Prognostic Stratification Boosting.
Proceedings of the Medical Imaging with Deep Learning, 7-9 July 2021, Lübeck, Germany., 2021

Nuc2Vec: Learning Representations of Nuclei in Histopathology Images with Contrastive Loss.
Proceedings of the Medical Imaging with Deep Learning, 7-9 July 2021, Lübeck, Germany., 2021

2020
Beyond Classification: Whole Slide Tissue Histopathology Analysis By End-To-End Part Learning.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2020

Deep Interactive Learning: An Efficient Labeling Approach for Deep Learning-Based Osteosarcoma Treatment Response Assessment.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

2019
DeepPET: A deep encoder-decoder network for directly solving the PET image reconstruction inverse problem.
Medical Image Anal., 2019

Towards Unsupervised Cancer Subtyping: Predicting Prognosis Using A Histologic Visual Dictionary.
CoRR, 2019

VOCA: Cell Nuclei Detection In Histopathology Images By Vector Oriented Confidence Accumulation.
Proceedings of the International Conference on Medical Imaging with Deep Learning, 2019

Unsupervised Subtyping of Cholangiocarcinoma Using a Deep Clustering Convolutional Autoencoder.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

2018
Terabyte-scale Deep Multiple Instance Learning for Classification and Localization in Pathology.
CoRR, 2018

DeepRec: A deep encoder-decoder network for directly solving the PET reconstruction inverse problem.
CoRR, 2018

Towards machine learned quality control: A benchmark for sharpness quantification in digital pathology.
Comput. Medical Imaging Graph., 2018

Survival Modeling of Pancreatic Cancer with Radiology Using Convolutional Neural Networks.
Proceedings of the Simulation, Image Processing, and Ultrasound Systems for Assisted Diagnosis and Navigation, 2018

2016
Autonomous Terrain Classification With Co- and Self-Training Approach.
IEEE Robotics Autom. Lett., 2016

Real-time data mining of massive data streams from synoptic sky surveys.
Future Gener. Comput. Syst., 2016

Multi-Organ Cancer Classification and Survival Analysis.
CoRR, 2016

Mitochondria-based Renal Cell Carcinoma Subtyping: Learning from Deep vs. Flat Feature Representations.
Proceedings of the 1st Machine Learning in Health Care, 2016

DeepScope: Nonintrusive Whole Slide Saliency Annotation and Prediction from Pathologists at the Microscope.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2016

2015
Understanding Neural Networks Through Deep Visualization.
CoRR, 2015

Boosting Convolutional Features for Robust Object Proposals.
CoRR, 2015

Machine learning approaches to analyze histological images of tissues from radical prostatectomies.
Comput. Medical Imaging Graph., 2015

Robot-Centric Activity Prediction from First-Person Videos: What Will They Do to Me'.
Proceedings of the Tenth Annual ACM/IEEE International Conference on Human-Robot Interaction, 2015

2014
Early Recognition of Human Activities from First-Person Videos Using Onset Representations.
CoRR, 2014

Sparse meta-Gaussian information bottleneck.
Proceedings of the 31th International Conference on Machine Learning, 2014

Automated Real-Time Classification and Decision Making in Massive Data Streams from Synoptic Sky Surveys.
Proceedings of the 10th IEEE International Conference on e-Science, 2014

2013
Automated Analysis of Tissue Micro-Array Images on the Example of Renal Cell Carcinoma.
Proceedings of the Similarity-Based Pattern Analysis and Recognition, 2013

Structure Preserving Embedding of Dissimilarity Data.
Proceedings of the Similarity-Based Pattern Analysis and Recognition, 2013

Feature Selection Strategies for Classifying High Dimensional Astronomical Data Sets.
CoRR, 2013

Quickly Boosting Decision Trees - Pruning Underachieving Features Early.
Proceedings of the 30th International Conference on Machine Learning, 2013

Recognizing Humans in Motion: Trajectory-based Aerial Video Analysis.
Proceedings of the British Machine Vision Conference, 2013

Feature selection strategies for classifying high dimensional astronomical data sets.
Proceedings of the 2013 IEEE International Conference on Big Data (IEEE BigData 2013), 2013

2012
End-to-end dexterous manipulation with deliberate interactive estimation.
Proceedings of the IEEE International Conference on Robotics and Automation, 2012

Combined shape, appearance and silhouette for simultaneous manipulator and object tracking.
Proceedings of the IEEE International Conference on Robotics and Automation, 2012

2011
Computational pathology: Challenges and promises for tissue analysis.
Comput. Medical Imaging Graph., 2011

2010
Infinite mixture-of-experts model for sparse survival regression with application to breast cancer.
BMC Bioinform., 2010

Geometrical Consistent 3D Tracing of Neuronal Processes in ssTEM Data.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

The Translation-invariant Wishart-Dirichlet Process for Clustering Distance Data.
Proceedings of the 27th International Conference on Machine Learning (ICML-10), 2010

Computational TMA Analysis and Cell Nucleus Classification of Renal Cell Carcinoma.
Proceedings of the Pattern Recognition, 2010

Neuron geometry extraction by perceptual grouping in ssTEM images.
Proceedings of the Twenty-Third IEEE Conference on Computer Vision and Pattern Recognition, 2010

2009
Guided review by frequent itemset mining: additional evidence for plaque detection.
Int. J. Comput. Assist. Radiol. Surg., 2009

Graph-Based Pancreatic Islet Segmentation for Early Type 2 Diabetes Mellitus on Histopathological Tissue.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2009

Randomized Tree Ensembles for Object Detection in Computational Pathology.
Proceedings of the Advances in Visual Computing, 5th International Symposium, 2009

The Bayesian group-Lasso for analyzing contingency tables.
Proceedings of the 26th Annual International Conference on Machine Learning, 2009

Inter-active learning of randomized tree ensembles for object detection.
Proceedings of the 12th IEEE International Conference on Computer Vision Workshops, 2009

2008
Computational Pathology Analysis of Tissue Microarrays Predicts Survival of Renal Clear Cell Carcinoma Patients.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2008

Automatic and robust forearm segmentation using graph cuts.
Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008

Weakly Supervised Cell Nuclei Detection and Segmentation on Tissue Microarrays of Renal Clear Cell Carcinoma.
Proceedings of the Pattern Recognition, 2008


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