Stefan Schulz

Orcid: 0000-0001-7222-3287

Affiliations:
  • Medical University of Graz, Austria
  • Freiburg University Hospital, Department of Medical Informatics, Germany (former)
  • Freiburg University, Computational Linguistics Lab, Germany (former)
  • Heidelberg University, Germany (PhD 1990)


According to our database1, Stefan Schulz authored at least 264 papers between 1996 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
O2 supplementation disambiguation in clinical narratives to support retrospective COVID-19 studies.
BMC Medical Informatics Decis. Mak., December, 2024

2023
Embedding-based terminology expansion via secondary use of large clinical real-world datasets.
J. Biomed. Informatics, November, 2023

SNOMED CT and Basic Formal Ontology - convergence or contradiction between standards? The case of "clinical finding".
Appl. Ontology, 2023

Data-Driven Identification of Clinical Real-World Expressions Linked to ICD.
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

Secondary Use of Clinical Problem List Entries for Neural Network-Based Disease Code Assignment.
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

SapBERT-Based Medical Concept Normalization Using SNOMED CT.
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

Clustering Similar Diagnosis Terms.
Proceedings of the Caring is Sharing - Exploiting the Value in Data for Health and Innovation - Proceedings of MIE 2023, Gothenburg, Sweden, 22, 2023

KOSonto: an Ontology for Knowledge Organization Systems, Their Constituents, and Their Referents.
Proceedings of the International Conference on Biomedical Ontologies 2023 together with the Workshop on Ontologies for Infectious and Immune-Mediated Disease Data Science (OIIDDS 2023) and the FAIR Ontology Harmonization and TRUST Data Interoperability Workshop (FOHTI 2023), Brasília, Brazil, August 28, 2023

Towards Principles of Ontology-Based Annotation of Clinical Narratives.
Proceedings of the International Conference on Biomedical Ontologies 2023 together with the Workshop on Ontologies for Infectious and Immune-Mediated Disease Data Science (OIIDDS 2023) and the FAIR Ontology Harmonization and TRUST Data Interoperability Workshop (FOHTI 2023), Brasília, Brazil, August 28, 2023

Identification of Non-Lexical Content in Croatian Health Forum Entries.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
Validation of Multiple Path Translation for SNOMED CT Localisation.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022

Overview of Existing Tools for Extracting Health and Fitness Data from mHealth Apps.
Proceedings of the Advances in Informatics, Management and Technology in Healthcare, 2022

Alcohol Status Standardization from Clinical Real World Data with Transformer Architectures.
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Terminology Expansion via Co-occurrence Analysis of Large Clinical Real-World Datasets.
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

GRASCCO - The First Publicly Shareable, Multiply-Alienated German Clinical Text Corpus.
Proceedings of the German Medical Data Sciences 2022 - Future Medicine: More Precise, More Integrative, More Sustainable! - Proceedings of the Joint Conference of the 67th Annual Meeting of the German Association of Medical Informatics, Biometry, and Epidemiology e.V. (gmds) and the 14th Annual Meeting of the TMF, 2022

2021
Collecting specialty-related medical terms: Development and evaluation of a resource for Spanish.
BMC Medical Informatics Decis. Mak., 2021

Correction to: Technology Acceptance of a Machine Learning Algorithm Predicting Delirium in a Clinical Setting: a Mixed-Methods Study.
J. Medical Syst., 2021

Technology Acceptance of a Machine Learning Algorithm Predicting Delirium in a Clinical Setting: a Mixed-Methods Study.
J. Medical Syst., 2021

Secondary Use of Clinical Problem List Entries for Neural Network-Based Disease Code Assignment.
CoRR, 2021

Transfer Learning for Classifying Spanish and English Text by Clinical Specialties.
Proceedings of the Public Health and Informatics, 2021

Automatic Generation of German Translation Candidates for SNOMED CT Textual Descriptions.
Proceedings of the Public Health and Informatics, 2021

AHD2FHIR: A Tool for Mapping of Natural Language Annotations to Fast Healthcare Interoperability Resources - A Technical Case Report.
Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

2020
Risk prediction of delirium in hospitalized patients using machine learning: An implementation and prospective evaluation study.
J. Am. Medical Informatics Assoc., 2020

How versioning of terminology systems can be supported by ontological models - a case study on TNM tumor classification.
Appl. Ontology, 2020

Ontology-Based and Architecture-Based Method for the Development of Interoperable Care Systems for Type 2 Diabetes Mellitus.
Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020

Leveraging PubMed to Create a Specialty-Based Sense Inventory for Spanish Acronym Resolution.
Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020

Character-Level Neural Language Modelling in the Clinical Domain.
Proceedings of the Digital Personalized Health and Medicine - Proceedings of MIE 2020, Medical Informatics Europe, Geneva, Switzerland, April 28, 2020

Localising the Clinical Terminology SNOMED CT by Semi-automated Creation of a German Interface Vocabulary.
Proceedings of the LREC 2020 Workshop on Multilingual Biomedical Text Processing, 2020

First Steps to Evaluate an NLP Tool's Medication Extraction Accuracy from Discharge Letters.
Proceedings of the German Medical Data Sciences: Bringing Data to Life - Proceedings of the Joint Annual Meeting of the German Association of Medical Informatics, Biometry and Epidemiology (gmds e.V.) and the Central European Network, 2020

2019
EHR problem list clustering for improved topic-space navigation.
BMC Medical Informatics Decis. Mak., 2019

On beyond Gruber: "Ontologies" in today's biomedical information systems and the limits of OWL.
J. Biomed. Informatics X, 2019

Quantitative analysis of manual annotation of clinical text samples.
Int. J. Medical Informatics, 2019

Building an Experimental German User Interface Terminology Linked to SNOMED CT.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Development of a Machine Learning Model Predicting an ICU Admission for Patients with Elective Surgery and Its Prospective Validation in Clinical Practice.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Clinical Text Mining on FHIR.
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

An Example of Multimodal Biological Knowledge Representation.
Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019

Addressing the Negation Gap in SNOMED CT by Reified Negated Concepts.
Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019

Ontology Patterns for Tubular or Spherical Layered Structures. A Case Study from Oncology.
Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019

Representing Literary Characters and their Attributes in an Ontology.
Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019

Aligning an Administrative Procedure Coding System with SNOMED CT.
Proceedings of the Joint Ontology Workshops 2019 Episode V: The Styrian Autumn of Ontology, 2019

Supervised ICD Code Assignment to Short Clinical Problem List Entries.
Proceedings of the ICT for Health Science Research - Proceedings of the EFMI 2019 Special Topic Conference, 2019

2018
Scrutinizing SNOMED CT's Ability to Reconcile Clinical Language Ambiguities with an Ontology Representation.
Proceedings of the Building Continents of Knowledge in Oceans of Data: The Future of Co-Created eHealth, 2018

Analysis of MeSH Indexing Patterns and Frequency of Predicates.
Proceedings of the Building Continents of Knowledge in Oceans of Data: The Future of Co-Created eHealth, 2018

The Role of Foundational Ontologies for Preventing Bad Ontology Design.
Proceedings of the Joint Ontology Workshops 2018 Episode IV: The South African Spring co-located with the 10th International Conference on Formal Ontology in Information Systems (FOIS 2018), 2018

Evaluating the Impact of Incorrect Diabetes Coding on the Performance of Multivariable Prediction Models.
Proceedings of the Data, 2018

Problem List Clustering for Improved Patient-Based Disease Perception.
Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

Towards an Ontology of Religious and Spiritual Belief.
Proceedings of the Formal Ontology in Information Systems, 2018

EHR Text Categorization for Enhanced Patient-Based Document Navigation.
Proceedings of the Health Informatics Meets eHealth - Biomedical Meets eHealth - From Sensors to Decisions, 2018

2017
Validating EHR clinical models using ontology patterns.
J. Biomed. Informatics, 2017

Ontological interpretation of biomedical database content.
J. Biomed. Semant., 2017

TREC 2017 Precision Medicine - Medical University of Graz.
Proceedings of The Twenty-Sixth Text REtrieval Conference, 2017

Experiments to Create Ontology-based Disease Models for Diabetic Retinopathy from Different Biomedical Resources.
Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

Interface Terminologies, Reference Terminologies and Aggregation Terminologies: A Strategy for Better Integration.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Unsupervised Abbreviation Expansion in Clinical Narratives.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Analysis of Historical Medical Phenomena Using Large N-Gram Corpora.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

TNM-O: A Modular Ontological Approach for the Representation of Tumour Entities across TNM Versions.
Proceedings of the Joint Ontology Workshops 2017 Episode 3: The Tyrolean Autumn of Ontology, 2017

Lexical Ambiguity in SNOMED CT.
Proceedings of the Joint Ontology Workshops 2017 Episode 3: The Tyrolean Autumn of Ontology, 2017

Pizza & Wine: The Need for Educational Tools for Foundational Ontologies.
Proceedings of the Joint Ontology Workshops 2017 Episode 3: The Tyrolean Autumn of Ontology, 2017

Basics of a Drug Ontology for Annotations of Clinical Narratives.
Proceedings of the Joint Ontology Workshops 2017 Episode 3: The Tyrolean Autumn of Ontology, 2017

Scrutinizing the Axiomatic Basis of SNOMED CT: How Confused is it by the Ambiguous Terminology Paradigm?
Proceedings of the 8th International Conference on Biomedical Ontology (ICBO 2017), Newcastle-upon-Tyne, United Kingdom, September 13th, 2017

Semantic Technologies for Re-Use of Clinical Routine Data.
Proceedings of the Health Informatics Meets eHealth - Digital Insight - Information-Driven Health & Care, 2017

Is the Application of SNOMED CT Concept Model sufficiently Quality Assured?
Proceedings of the AMIA 2017, 2017

Ontological Representation of Laboratory Test Observables: Challenges and Perspectives in the SNOMED CT Observable Entity Model Adoption.
Proceedings of the Artificial Intelligence in Medicine, 2017

2016
Can SNOMED CT be squeezed without losing its shape?
J. Biomed. Semant., 2016

TNM-O: ontology support for staging of malignant tumours.
J. Biomed. Semant., 2016

Ontological interpretation of biomedical database annotations.
Proceedings of the 7th Workshop on Ontologies and Data in Life Sciences, 2016

Qualitative assessment of annotations using SNOMED CT.
Proceedings of the 7th Workshop on Ontologies and Data in Life Sciences, 2016

Social Media as Catalyzer for Connected Health: Hype or Hope? Perspectives from IMIA Working Groups.
Proceedings of the Nursing Informatics 2016 - eHealth for All: Every Level Collaboration, 2016

Publishing Biomedical Predication Repository About MeSH Co-Occurrences in MEDLINE.
Proceedings of the Exploring Complexity in Health: An Interdisciplinary Systems Approach - Proceedings of MIE2016 at HEC2016, Munich, Germany, 28 August, 2016

Representing ICD-11 JLMMS Using IHTSDO Representation Formalisms.
Proceedings of the Exploring Complexity in Health: An Interdisciplinary Systems Approach - Proceedings of MIE2016 at HEC2016, Munich, Germany, 28 August, 2016

MapReduce in the Cloud: A Use Case Study for Efficient Co-Occurrence Processing of MEDLINE Annotations with MeSH.
Proceedings of the Exploring Complexity in Health: An Interdisciplinary Systems Approach - Proceedings of MIE2016 at HEC2016, Munich, Germany, 28 August, 2016

A Patient Safety Information Model for Interoperability.
Proceedings of the Health Informatics Meets eHealth - Predictive Modeling in Healthcare - From Prediction to Prevention, 2016

ICD-11 (JLMMS) and SCT Inter-Operation.
Proceedings of the Health Informatics Meets eHealth - Predictive Modeling in Healthcare - From Prediction to Prevention, 2016

SEMCARE: Multilingual Semantic Search in Semi-Structured Clinical Data.
Proceedings of the Health Informatics Meets eHealth - Predictive Modeling in Healthcare - From Prediction to Prevention, 2016

Unsupervised Abbreviation Detection in Clinical Narratives.
Proceedings of the Clinical Natural Language Processing Workshop, 2016

2015
Detection of sentence boundaries and abbreviations in clinical narratives.
BMC Medical Informatics Decis. Mak., 2015

Secondary use of electronic health records for building cohort studies through top-down information extraction.
J. Biomed. Informatics, 2015

Semantic enrichment of clinical models towards semantic interoperability. The heart failure summary use case.
J. Am. Medical Informatics Assoc., 2015

A Generic Architecture for an Adaptive, Interoperable and Intelligent Type 2 Diabetes Mellitus Care System.
Proceedings of the pHealth 2015, 2015

Integrated care: an Information Model for Patient Safety and Vigilance Reporting Systems.
Proceedings of the Digital Healthcare Empowering Europeans, 2015

Acquisition of Character Translation Rules for Supporting SNOMED CT Localizations.
Proceedings of the Digital Healthcare Empowering Europeans, 2015

ContSys under Ontological Scrutiny.
Proceedings of the Digital Healthcare Empowering Europeans, 2015

Harmonizing SNOMED CT with BioTopLite: An Exercise in Principled Ontology Alignment.
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Towards a Formal Representation of Processes and Objects Regarding the Delivery of Telehealth Services: The Telehealth Ontology (TEON).
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015


Acquiring Plausible Predications from MEDLINE by Clustering MeSH Annotations.
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

Feasibility of an ontology driven tumor-node-metastasis classifier application: A study on colorectal cancer.
Proceedings of the International Symposium on Innovations in Intelligent SysTems and Applications, 2015

Formal representation of disorder associations in SNOMED CT.
Proceedings of the International Conference on Biomedical Ontology, 2015

TNM-O an ontology for the Tumor-Node-Metastasis classification of malignant tumors: a study on rectal cancer.
Proceedings of the International Conference on Biomedical Ontology, 2015

A Modal Representation of Graded Medical Statements.
Proceedings of the Formal Grammar - 20th and 21st International Conferences, 2015

Semantic Retrieval and Navigation in Clinical Document Collections.
Proceedings of the Health Informatics Meets eHealth, 2015

Knowledge Extraction from MEDLINE by Combining Clustering with Natural Language Processing.
Proceedings of the AMIA 2015, 2015

JUFIT: A Configurable Rule Engine for Filtering and Generating New Multilingual UMLS Terms.
Proceedings of the AMIA 2015, 2015


2014
Using the relation ontology Metarel for modelling Linked Data as multi-digraphs.
Semantic Web, 2014

Validating archetypes for the Multiple Sclerosis Functional Composite.
BMC Medical Informatics Decis. Mak., 2014

Automatic Summarization for Terminology Recommendation: The Case of the NCBO Ontology Recommender.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

Ontology Patterns for Clinical Information Modelling.
Proceedings of the 5th Workshop on Ontology and Semantic Web Patterns (WOP2014) co-located with the 13th International Semantic Web Conference (ISWC 2014), 2014

What's in a Class? Lessons Learnt from the ICD - SNOMED CT Harmonisation.
Proceedings of the e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th European Medical Informatics Conference, Istanbul, Turkey, August 31, 2014

ICD-11 and SNOMED CT Common Ontology: Circulatory System.
Proceedings of the e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th European Medical Informatics Conference, Istanbul, Turkey, August 31, 2014

Using concept co-occurrences for a biomedical facts acquisition.
Proceedings of the e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th European Medical Informatics Conference, Istanbul, Turkey, August 31, 2014

Improving EHR Semantic Interoperability: Future Vision and Challenges.
Proceedings of the e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th European Medical Informatics Conference, Istanbul, Turkey, August 31, 2014

Ontology patterns-based transformation of clinical information.
Proceedings of the e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th European Medical Informatics Conference, Istanbul, Turkey, August 31, 2014

A Web-Based Tool for Development of a Common Ontology between ICD11 and SNOMED-CT.
Proceedings of the 2014 IEEE International Conference on Healthcare Informatics, 2014

An Ontological Analysis of Reference in Health Record Statements.
Proceedings of the Formal Ontology in Information Systems, 2014

Ontology Content Patterns as Bridge for the Semantic Representation of Clinical Information.
Proceedings of the Health Informatics Meets eHealth, 2014

Ontology-based infrastructure for a meaningful EHR representation and use.
Proceedings of IEEE-EMBS International Conference on Biomedical and Health Informatics, 2014

Disambiguation of Period Characters in Clinical Narratives.
Proceedings of the 5th International Workshop on Health Text Mining and Information Analysis, 2014

2013
Evaluation of the OQuaRE framework for ontology quality.
Expert Syst. Appl., 2013

Machine vs. Human Translation of SNOMED CT Terms.
Proceedings of the MEDINFO 2013, 2013

Do we need a Common Ontology between ICD 11 and SNOMED CT to ensure Seamless Re-Use and Semantic Interoperability?
Proceedings of the MEDINFO 2013, 2013

Sharing Ontology between ICD 11 and SNOMED CT will enable Seamless Re-use and Semantic Interoperability.
Proceedings of the MEDINFO 2013, 2013

Is the International Information Model for Patient Safety (2IMPS) a Suitable Tool to Compare Patient Safety Reporting Systems?
Proceedings of the MEDINFO 2013, 2013

Isosemantic Rendering of Clinical Information Using Formal Ontologies and RDF.
Proceedings of the MEDINFO 2013, 2013

Question Answering for Health Professionals and Laypersons.
Proceedings of the MEDINFO 2013, 2013

Medical Concept Representation: The Years Beyond 2000.
Proceedings of the MEDINFO 2013, 2013

Ontology-based reinterpretation of the SNOMED CT context model.
Proceedings of the 4th International Conference on Biomedical Ontology, 2013

BioTopLite: An Upper Level Ontology for the Life SciencesEvolution, Design and Application.
Proceedings of the 43. Jahrestagung der Gesellschaft für Informatik, 2013

Measuring the Effect of a Guideline-based Training on Ontology Design with a Competency Questions based Evaluation Approach.
Proceedings of the 43. Jahrestagung der Gesellschaft für Informatik, 2013

German-Language Content in Biomedical Vocabularies.
Proceedings of the Working Notes for CLEF 2013 Conference , 2013

How Ontologies Can Improve Semantic Interoperability in Health Care.
Proceedings of the Process Support and Knowledge Representation in Health Care, 2013

Ontology-Based Reengineering of the SNOMED CT Context Model.
Proceedings of the Artificial Intelligence in Medicine, 2013

2012
Usability-driven pruning of large ontologies: the case of SNOMED CT.
J. Am. Medical Informatics Assoc., 2012

Process attributes in bio-ontologies.
BMC Bioinform., 2012

Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology.
J. Biomed. Semant., 2012

Creation and use of Language Resources in a Question-Answering eHealth System.
Proceedings of the Eighth International Conference on Language Resources and Evaluation, 2012

Developing the Animals in Context Ontology.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

The CEN ISO Standard Categorial Structure as a Top-Level Set of Constraints for Ontology Disambiguation.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Teaching Good Biomedical Ontology Design.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Revisiting ontological foundations of the OpenEHR Entry Model.
Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

Competing Interpretations of Disorder Codes in SNOMED CT and ICD.
Proceedings of the AMIA 2012, 2012

Metonymies in Medical Terminologies. A SNOMED CT Case Study.
Proceedings of the AMIA 2012, 2012

2011
Unintended consequences of existential quantifications in biomedical ontologies.
BMC Bioinform., 2011

Scalable representations of diseases in biomedical ontologies.
J. Biomed. Semant., 2011

Grains, components and mixtures in biomedical ontologies.
J. Biomed. Semant., 2011

OBML - Ontologies in Biomedicine and Life Sciences.
J. Biomed. Semant., 2011

Ontology patterns for tabular representations of biomedical knowledge on neglected tropical diseases.
Bioinform., 2011

Consolidating SNOMED CT's ontological commitment.
Appl. Ontology, 2011

Modularity Issues in Biomedical Ontologies.
Proceedings of the Modular Ontologies - Proceedings of the Fifth International Workshop, 2011

Modularization Requirements in Bio-Ontologies: A Case Study of ChEbi.
Proceedings of the Modular Ontologies - Proceedings of the Fifth International Workshop, 2011

Parts and Wholes, Shapes and Holes in Living Beings.
Proceedings of the First Interdisciplinary Workshop on SHAPES, 2011

Modelling Threshold Phenomena in OWL: Metabolite Concentrations as Evidence For Disorders.
Proceedings of the 8th International Workshop on OWL: Experiences and Directions (OWLED 2011), 2011

A T-Box Generator for Testing Scalability of OWL Mereotopological Patterns.
Proceedings of the 8th International Workshop on OWL: Experiences and Directions (OWLED 2011), 2011

Checking Coding Completeness by Mining Discharge Summaries.
Proceedings of the User Centered Networked Health Care - Proceedings of MIE 2011, 2011

Truecasing Clinical Narratives.
Proceedings of the User Centered Networked Health Care - Proceedings of MIE 2011, 2011

Use of Multiple Ontologies to Characterize the Bioactivity of Small Molecules.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Higgs Bosons, Mars Missions, and Unicorn Delusions: How to Deal with Terms of Dubious Reference in Scientific Ontologies.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Information Models and Ontologies for Representing the Electronic Health Record.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010
Developing DCO: The DebugIT core ontology for antibiotics resistence modelling.
Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, 2010

Bridging the semantics gap between terminologies, ontologies, and information models.
Proceedings of the MEDINFO 2010, 2010

The DebugIT Core Ontology: semantic integration of antibiotics resistance patterns.
Proceedings of the MEDINFO 2010, 2010

Ensuring HL7-based information model requirements within an ontology framework.
Proceedings of the MEDINFO 2010, 2010

Performance Analysis of a POS Tagger applied to Discharge Summaries in Portuguese.
Proceedings of the MEDINFO 2010, 2010

What are chemical structures and their relations?
Proceedings of the Formal Ontology in Information Systems, 2010

2009
SNOMED reaching its adolescence: Ontologists' and logicians' health check.
Int. J. Medical Informatics, 2009

Alignment of the UMLS semantic network with BioTop: methodology and assessment.
Bioinform., 2009

Molecular interactions: On the ambiguity of ordinary statements in biomedical literature.
Appl. Ontology, 2009

Automatic Mapping of Clinical Documentation to SNOMED CT.
Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009

Is the "International Classification for Patient Safety" a Classification?
Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009

Relationship Groups in SNOMED CT.
Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009

The Role of Ontologies for Sustainable, Semantically Interoperable and Trustworthy EHR Solutions.
Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009

HL7's Comprehensive Standards Set and Its International Collaboration for Enabling Semantically Interoperable eHealth and pHealth Solutions.
Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009

Detecting Underspecification in SNOMED CT Concept Definitions Through Natural Language Processing.
Proceedings of the AMIA 2009, 2009

2008
Formal representation of complex SNOMED CT expressions.
BMC Medical Informatics Decis. Mak., 2008

SNOMED CT - advances in concept mapping, retrieval, and ontological foundations. Selected contributions to the Semantic Mining Conference on SNOMED CT (SMCS 2006).
BMC Medical Informatics Decis. Mak., 2008

Adapting Clinical Ontologies in Real-World Environments.
J. Univers. Comput. Sci., 2008

Model Formulation: Modeling Functional Neuroanatomy for an Anatomy Information System.
J. Am. Medical Informatics Assoc., 2008

BioTop: An upper domain ontology for the life sciencesA description of its current structure, contents and interfaces to OBO ontologies.
Appl. Ontology, 2008

BioTop and ChemTop - Top-Domain Ontologies for Biology and Chemistry.
Proceedings of the Poster and Demonstration Session at the 7th International Semantic Web Conference (ISWC2008), 2008

How Granularity Issues Concern Biomedical Ontology Integration.
Proceedings of the eHealth Beyond the Horizon, 2008

Gene Regulation Ontology (GRO): Design Principles and Use Cases.
Proceedings of the eHealth Beyond the Horizon, 2008

Post-Coordination in the Mapping of Interface Terms of a Clinical Wound Documentation System to SNOMED CT.
Proceedings of the Third International Conference on Knowledge Representation in Medicine, Phoenix, Arizona, USA, May 31st, 2008

The ontology of biological taxa.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

Named Entity or Entity Name?
Proceedings of the Ontologies and Text Mining for Life Sciences: Current Status and Future Perspectives, 24.03., 2008

Evaluation of a Document Search Engine in a Clinical Department System.
Proceedings of the AMIA 2008, 2008

2007
Automatic lexeme acquisition for a multilingual medical subword thesaurus.
Int. J. Medical Informatics, 2007

Spatial location and its relevance for terminological inferences in bio-ontologies.
BMC Bioinform., 2007

Towards the ontological foundations of symbolic biological theories.
Artif. Intell. Medicine, 2007

Ontological foundations for biomedical sciences.
Artif. Intell. Medicine, 2007

Towards a Top-Domain Ontology for Linking Biomedical Ontologies.
Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007

SNOMED CT's Problem List: Ontologists' and Logicians' Therapy Suggestions.
Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007

Large-Scale Evaluation of a Medical Cross-Language Information Retrieval System.
Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007

Thesaurus Anomaly Detection by User Action Monitoring.
Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007

Corpus-based Error Detection in a Multilingual Medical Thesaurus.
Proceedings of the MEDINFO 2007 - Proceedings of the 12th World Congress on Health (Medical) Informatics, 2007

The @neurIST Ontology of Intracranial Aneurysms: Providing Terminological Services for an Integrated IT Infrastructure.
Proceedings of the AMIA 2007, 2007

Replacing SEP-Triplets in SNOMED CT Using Tractable Description Logic Operators.
Proceedings of the Artificial Intelligence in Medicine, 2007

2006
Biomedical ontologies: What <i>part-of</i> is and isn't.
J. Biomed. Informatics, 2006

An Ontology driven collaborative development for biomedical terminologies: from the French CCAM to the Australian ICHI coding system.
Proceedings of the Ubiquity: Technologies for Better Health in Aging Societies, 2006

Comparison of ICHI and CCAM Basic Coding System.
Proceedings of the Ubiquity: Technologies for Better Health in Aging Societies, 2006

Semantic Atomicity and Multilinguality in the Medical Domain: Design Considerations for the MorphoSaurus Subword Lexicon.
Proceedings of the Fifth International Conference on Language Resources and Evaluation, 2006

Language Specific and Topic Focused Web Crawling.
Proceedings of the Fifth International Conference on Language Resources and Evaluation, 2006

"Lmo-2 interacts with elf-2" - On the Meaning of Common Statements in Biomedical Literature.
Proceedings of the KR-MED 2006, 2006

From GENIA to BIOTOP - Towards a Top-Level Ontology for Biology.
Proceedings of the Formal Ontology in Information Systems, 2006

Towards an Upper-Level Ontology for Molecular Biology.
Proceedings of the AMIA 2006, 2006

Towards a Multilingual Medical Lexicon.
Proceedings of the AMIA 2006, 2006

2005
Part-whole representation and reasoning in formal biomedical ontologies.
Artif. Intell. Medicine, 2005

Bootstrapping dictionaries for cross-language information retrieval.
Proceedings of the SIGIR 2005: Proceedings of the 28th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, 2005

A CLIR interface to a web search engine.
Proceedings of the SIGIR 2005: Proceedings of the 28th Annual International ACM SIGIR Conference on Research and Development in Information Retrieval, 2005

Subword Clusters as Light-Weight Interlingua for Multilingual Document Retrieval.
Proceedings of Machine Translation Summit X: Papers, 2005

Semantic Clarification of the Representation of Procedures and Diseases in SNOMED<sup>®</sup>CT.
Proceedings of the Connecting Medical Informatics and Bio-Informatics - Proceedings of MIE 2005, 2005

Automatic Lexicon Acquisition for a Medical Cross-Language Information Retrieval System.
Proceedings of the Connecting Medical Informatics and Bio-Informatics - Proceedings of MIE 2005, 2005

Cross-Language Mining for Acronyms and Their Completions from the Web.
Proceedings of the Discovery Science, 8th International Conference, 2005

Anatomical Information Science.
Proceedings of the Spatial Information Theory, International Conference, 2005

How to Distinguish Parthood from Location in Bio-Ontologies.
Proceedings of the AMIA 2005, 2005

Multilingual Biomedical Dictionary.
Proceedings of the AMIA 2005, 2005

Interchanging Lexical Information for a Multilingual Dictionary.
Proceedings of the AMIA 2005, 2005

Unsupervised Multilingual Word Sense Disambiguation via an Interlingua.
Proceedings of the Proceedings, 2005

2004
Interlingual Indexing across Different Languages.
Proceedings of the Computer-Assisted Information Retrieval (Recherche d'Information et ses Applications), 2004

Crossing Languages in Text Retrieval via an Interlingua.
Proceedings of the Computer-Assisted Information Retrieval (Recherche d'Information et ses Applications), 2004

Towards a computational paradigm for biomedical structure.
Proceedings of the KR-MED 2004, 2004

Parthood as Spatial Inclusion - Evidence from biomedical Conceptualizations.
Proceedings of the Principles of Knowledge Representation and Reasoning: Proceedings of the Ninth International Conference (KR2004), 2004

An Experimental Assessment of Direct Versus. Interlingual Translation for Cross-Language Information Retrieval.
Proceedings of the Seventeenth International Florida Artificial Intelligence Research Society Conference, 2004

Representing Natural Kinds by Spatial Inclusion and Containment.
Proceedings of the 16th Eureopean Conference on Artificial Intelligence, 2004

DL Requirements from Medicine and Biology.
Proceedings of the 2004 International Workshop on Description Logics (DL2004), 2004

Cognate Mapping - A Heuristic Strategy for the Semi-Supervised Acquisition of a Spanish Lexicon from a Portuguese Seed Lexicon.
Proceedings of the COLING 2004, 2004

A Description Logics Approach to CGPs.
Proceedings of the Computer-based Support for Clinical Guidelines and Protocols, 2004

Mereological Semantics for Bio-Ontologies.
Proceedings of the Nineteenth National Conference on Artificial Intelligence, 2004

Learning Indexing Patterns from One Language for the Benefit of Others.
Proceedings of the Nineteenth National Conference on Artificial Intelligence, 2004

Building a Very Large Ontology from Medical Thesauri.
Proceedings of the Handbook on Ontologies, 2004

2003
Towards a Broad-Coverage Biomedical Ontology Based on Description Logics.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003

Using Cross-Lingual Information to Cope with Underspecification in Formal Ontologies.
Proceedings of the New Navigators: from Professionals to Patients, 2003

Subword-Based Text Retrieval.
Proceedings of the 36th Hawaii International Conference on System Sciences (HICSS-36 2003), 2003

Subword Retrieval on Biomedical Documents.
Proceedings of the Sixteenth International Florida Artificial Intelligence Research Society Conference, 2003

Cross-language MeSH Indexing using Morpho-Semantic Normalization.
Proceedings of the AMIA 2003, 2003

Logic-based Remodeling of the Digital Anatomist Foundational Model.
Proceedings of the AMIA 2003, 2003

2002
MedSynDikate - a natural language system for the extraction of medical information from findings reports.
Int. J. Medical Informatics, 2002

240, 000 concepts and relations-towards mega knowledge bases for real-world applications.
Proceedings of the IEEE International Conference on Systems, Man and Cybernetics, Yasmine Hammamet, Tunisia, October 6-9, 2002, 2002

Creating Knowledge Repositories from Biomedical Reports: The MEDSYNDIKATE Text Mining System.
Proceedings of the 7th Pacific Symposium on Biocomputing, 2002

Towards Very Large Ontologies for Medical Language Processing.
Proceedings of the Third International Conference on Language Resources and Evaluation, 2002

Necessary Parts and Wholes in Bio-Ontologies.
Proceedings of the Eights International Conference on Principles and Knowledge Representation and Reasoning (KR-02), 2002

Turning Lead into Gold? Feeding a Formal Knowledge Base with Informal Conceptual Knowledge.
Proceedings of the Knowledge Engineering and Knowledge Management. Ontologies and the Semantic Web, 2002

The German specialist lexicon.
Proceedings of the AMIA 2002, 2002

MORPHOSAURUS: Crosslingual Medical Text Retrieval by Subword Indexing.
Proceedings of the AMIA 2002, 2002

A knowledge representation view on biomedical structure and function.
Proceedings of the AMIA 2002, 2002

Biomedical text retrieval in languages with a complex morphology.
Proceedings of the ACL 2002 Workshop on Natural Language Processing in the Biomedical Domain, 2002

2001
Medical knowledge reengineering - converting major portions of the UMLS into a terminological knowledge base.
Int. J. Medical Informatics, 2001

Indexing Medical WWW Documents by Morphemes.
Proceedings of the MEDINFO 2001, 2001

Health Informatics World Wide - A WWW Service for the Health Informatics Community.
Proceedings of the MEDINFO 2001, 2001

A Search Engine for Morphologically Complex Languages.
Proceedings of the Advances in Intelligent Data Analysis, 4th International Conference, 2001

Mereotopological reasoning about parts and (w)holes in bio-ontologies.
Proceedings of the 2nd International Conference on Formal Ontology in Information Systems, 2001

Building a Large Knowledge Base Semi-Automatically.
Proceedings of the Fourteenth International Florida Artificial Intelligence Research Society Conference, 2001

PILLS: A Multilingual Authoring System for Patient Information.
Proceedings of the AMIA 2001, 2001

Bidirectional mereological reasoning in anatomical knowledge bases.
Proceedings of the AMIA 2001, 2001

Subword segmentation-leveling out morphological variations for medical document retrieval.
Proceedings of the AMIA 2001, 2001

Parts, Locations, and Holes - Formal Reasoning about Anatomical Structures.
Proceedings of the Artificial Intelligence Medicine, 2001

2000
Morpheme-based, cross-lingual indexing for medical document retrieval.
Int. J. Medical Informatics, 2000

Knowledge Engineering by Large-Scale Knowledge Reuse - Experience from the Medical Domain.
Proceedings of the KR 2000, 2000

Modeling anatomical spatial relations with description logics.
Proceedings of the AMIA 2000, 2000

MedSynDiKATe-design considerations for an ontology-based medical text understanding system.
Proceedings of the AMIA 2000, 2000

Automated coding of diagnoses-three methods compared.
Proceedings of the AMIA 2000, 2000

Towards Very Large Terminological Knowledge Bases: A Case Study from Medicine.
Proceedings of the Advances in Artificial Intelligence, 2000

1999
Discourse structures in medical reports - Watch out! The generation of referentially coherent and valid text knowledge bases in the medSYNDIKATE system.
Int. J. Medical Informatics, 1999

Part-Whole Reasoning: A Case Study in Medical Ontology Engineering.
IEEE Intell. Syst., 1999

How knowledge drives understandingmatching medical ontologies with the needs of medical language processing.
Artif. Intell. Medicine, 1999

Towards a Multilingual Morpheme Thesaurus for Medical Free-Text Retrieval.
Proceedings of the Medical Informatics Europe '99, Proceedings, Ljubljana, Slovenia, 1999

Automatic Import and Manual Refinement of Medical Knowledge.
Proceedings of the AMIA 1999, 1999

Streamlining semantic interpretation for medical narratives.
Proceedings of the AMIA 1999, 1999

Small Is Beautiful - Compact Semantics for Medical Language Processing.
Proceedings of the Artificial Intelligence in Medicine. Joint European Conference on Artificial Intelligence in Medicine and Medical Decision Making, 1999

Partonomic Reasoning as Taxonomic Reasoning in Medicine.
Proceedings of the Sixteenth National Conference on Artificial Intelligence and Eleventh Conference on Innovative Applications of Artificial Intelligence, 1999

1998
Why Discourse Structures in Medical Reports Matter for the Validity of Automatically Generated Text Knowledge Bases.
Proceedings of the MEDINFO '98, 1998

Part-Whole Reasoning in Medical Knowledge Bases Using Description Logics.
Proceedings of the KI-98: Advances in Artificial Intelligence, 1998

Part-whole reasoning in medical ontologies revisited-introducing SEP triplets into classification-based description logics.
Proceedings of the AMIA 1998, 1998

Controlled Evaluation of a Computer-Based Atlas of Histopathology.
Proceedings of the AMIA 1998, 1998

1996
Überleitungstabelle zwischen ICD-9 und ICD-10.
Proceedings of the Medizinische Informatik, Biometrie und Epidemiologie, 1996


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