Bridget T. McInnes

J. Biomed. Informatics, January, 2023

Exploring a deep learning neural architecture for closed Literature-based discovery.

[BibT_eX]

[DOI]

Clint Cuffy

J. Biomed. Informatics, 2023

2022

Effects of data and entity ablation on multitask learning models for biomedical entity recognition.

[BibT_eX]

[DOI]

Nicholas E. Rodriguez

Mai H. Nguyen

J. Biomed. Informatics, 2022

Call for papers: Semantics-enabled biomedical literature analytics.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2022

Extracting experimental parameter entities from scientific articles.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2022

Temporal disambiguation of relative temporal expressions in clinical texts.

[BibT_eX]

[DOI]

Frontiers Res. Metrics Anal., 2022

Forensic investigation of instant messaging services on linux OS: Discord and Slack as case studies.

[BibT_eX]

[DOI]

Megan Davis

Irfan Ahmed

Digit. Investig., 2022

TopEx: topic exploration of COVID-19 corpora - Results from the BioCreative VII Challenge Track 4.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2022

Graph Convolutional Networks for Chemical Relation Extraction.

[BibT_eX]

[DOI]

Christina Tang

Proceedings of the Companion of The Web Conference 2022, Virtual Event / Lyon, France, April 25, 2022

The International Workshop on Semantics-enabled Biomedical Literature Analytics (SeBiLAn).

[BibT_eX]

[DOI]

Proceedings of the Companion of The Web Conference 2022, Virtual Event / Lyon, France, April 25, 2022

Exploring Representations for Singular and Multi-Concept Relations for Biomedical Named Entity Normalization.

[BibT_eX]

[DOI]

Proceedings of the Companion of The Web Conference 2022, Virtual Event / Lyon, France, April 25, 2022

NLPatVCU: CLEF 2022 ChEMU Shared Task System Description.

[BibT_eX]

[DOI]

Christina Tang

Proceedings of the Working Notes of CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, September 5th - to, 2022

Extended Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents.

[BibT_eX]

[DOI]

Proceedings of the Working Notes of CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, September 5th - to, 2022

2021

Review of Temporal Reasoning in the Clinical Domain for Timeline Extraction: Where we are and where we need to be.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2021

MT-clinical BERT: scaling clinical information extraction with multitask learning.

[BibT_eX]

[DOI]

Andriy Mulyar

Özlem Uzuner

J. Am. Medical Informatics Assoc., 2021

Transferability of neural network clinical deidentification systems.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2021

Identifying Chemical Reactions and Their Associated Attributes in Patents.

[BibT_eX]

[DOI]

Frontiers Res. Metrics Anal., 2021

Using Literature Based Discovery to Gain Insights Into the Metabolomic Processes of Cardiac Arrest.

[BibT_eX]

[DOI]

D. Shanaka Wijesinghe

Aidan Myers

Frontiers Res. Metrics Anal., 2021

Extracting Adverse Drug Events from Clinical Notes.

[BibT_eX]

[DOI]

CoRR, 2021

Transferability of Neural Network-based De-identification Systems.

[BibT_eX]

[DOI]

CoRR, 2021

Review: Privacy-Preservation in the Context of Natural Language Processing.

[BibT_eX]

[DOI]

Changqing Luo

IEEE Access, 2021

2020

Adverse drug event detection using reason assignments in FDA drug labels.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2020

Measuring the quality of patient-physician communication.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2020

MT-Clinical BERT: Scaling Clinical Information Extraction with Multitask Learning.

[BibT_eX]

[DOI]

Andriy Mulyar

CoRR, 2020

NLP@VCU: Identifying Adverse Effects in English Tweets for Unbalanced Data.

[BibT_eX]

[DOI]

Cora Lewis

Proceedings of the Fifth Social Media Mining for Health Applications Workshop & Shared Task, 2020

NLPatVCU CLEF 2020 ChEMU Shared Task System Description.

[BibT_eX]

[DOI]

Proceedings of the Working Notes of CLEF 2020, 2020

An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents.

[BibT_eX]

[DOI]

Proceedings of the Working Notes of CLEF 2020, 2020

Jointly Learning Clinical Entities and Relations with Contextual Language Models and Explicit Context.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2020, 2020

2019

Indirect association and ranking hypotheses for literature based discovery.

[BibT_eX]

[DOI]

BMC Bioinform., 2019

Association measures for estimating semantic similarity and relatedness between biomedical concepts.

[BibT_eX]

[DOI]

Alex McQuilkin

Artif. Intell. Medicine, 2019

NLP Whack-A-Mole: Challenges in Cross-Domain Temporal Expression Extraction.

[BibT_eX]

[DOI]

Luke Maffey

Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2019

Evaluating ontology coverage and internal structure to better align patients with clinical trials.

[BibT_eX]

[DOI]

Jooho Lee

Catherine Blake

Proceedings of the Information... Anyone, Anywhere, Any Time, Any Way, 2019

Untapped Potential of Clinical Text for Opioid Surveillance.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2019, 2019

Improving Accuracy of Patient Speech Transcription Using Dialect-Specific Automatic Speech Recognition Models.

[BibT_eX]

[DOI]

Rachel Dorn

Scott Vrana

Proceedings of the AMIA 2019, 2019

2018

Local ensemble learning from imbalanced and noisy data for word sense disambiguation.

[BibT_eX]

[DOI]

Bartosz Krawczyk

Pattern Recognit., 2018

Vector representations of multi-word terms for semantic relatedness.

[BibT_eX]

[DOI]

Clint Cuffy

J. Biomed. Informatics, 2018

TAC SRIE 2018: Extracting Systematic Review Information with MedaCy.

[BibT_eX]

[DOI]

Proceedings of the 2018 Text Analysis Conference, 2018

Chrono at SemEval-2018 Task 6: A System for Normalizing Temporal Expressions.

[BibT_eX]

[DOI]

Proceedings of The 12th International Workshop on Semantic Evaluation, 2018

SciREL at SemEval-2018 Task 7: A System for Semantic Relation Extraction and Classification.

[BibT_eX]

[DOI]

Chathurika Brahmana

Proceedings of The 12th International Workshop on Semantic Evaluation, 2018

2017

Literature Based Discovery: Models, methods, and trends.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2017

DroidVisor: An Android secure application recommendation system.

[BibT_eX]

[DOI]

Proceedings of the 2017 IFIP/IEEE Symposium on Integrated Network and Service Management (IM), 2017

Sentiment Classification from Multi-class Imbalanced Twitter Data Using Binarization.

[BibT_eX]

[DOI]

Bartosz Krawczyk

Alberto Cano

Proceedings of the Hybrid Artificial Intelligent Systems - 12th International Conference, 2017

Improving Correlation with Human Judgments by Integrating Semantic Similarity with Second-Order Vectors.

[BibT_eX]

[DOI]

Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

Evaluating Feature Extraction Methods for Knowledge-based Biomedical Word Sense Disambiguation.

[BibT_eX]

[DOI]

Clint Cuffy

Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

Parsing MetaMap Files in Hadoop.

[BibT_eX]

[DOI]

Alberto Cano

Proceedings of the AMIA 2017, 2017

Semantic Association for Literature Based Discovery.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

2016

Improving Correlation with Human Judgments by Embedding Second Order Vectors with Semantic Similarity.

[BibT_eX]

[DOI]

CoRR, 2016

VCU at Semeval-2016 Task 14: Evaluating definitional-based similarity measure for semantic taxonomy enrichment.

[BibT_eX]

[DOI]

Proceedings of the 10th International Workshop on Semantic Evaluation, 2016

VCU-TSA at Semeval-2016 Task 4: Sentiment Analysis in Twitter.

[BibT_eX]

[DOI]

Gerard Briones

Kasun Amarasinghe

Proceedings of the 10th International Workshop on Semantic Evaluation, 2016

Nanomedicine Entity Extraction.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

2015

Evaluating semantic similarity and relatedness over the semantic grouping of clinical term pairs.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2015

2014

Determining the difficulty of Word Sense Disambiguation.

[BibT_eX]

[DOI]

Mark Stevenson

J. Biomed. Informatics, 2014

U-path: An undirected path-based measure of semantic similarity.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

2013

Evaluating measures of semantic similarity and relatedness to disambiguate terms in biomedical text.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2013

UMLS: : Similarity: Measuring the Relatedness and Similarity of Biomedical Concepts.

[BibT_eX]

[DOI]

Genevieve Melton-Meaux

Proceedings of the Human Language Technologies: Conference of the North American Chapter of the Association of Computational Linguistics, 2013

2012

Using PharmGKB to train text mining approaches for identifying potential gene targets for pharmacogenomic studies.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2012

Measuring the similarity and relatedness of concepts in the medical domain: IHI 2012 tutorial overview.

[BibT_eX]

[DOI]

Proceedings of the ACM International Health Informatics Symposium, 2012

Semantic relatedness study using second order co-occurrence vectors computed from biomedical corpora, UMLS and WordNet.

[BibT_eX]

[DOI]

Genevieve Melton-Meaux

Proceedings of the ACM International Health Informatics Symposium, 2012

Evaluating Semantic Relatedness and Similarity Measures with Standardized MedDRA Queries.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

2011

Towards a framework for developing semantic relatedness reference standards.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2011

Collocation analysis for UMLS knowledge-based word sense disambiguation.

[BibT_eX]

[DOI]

Antonio Jimeno-Yepes

Antonio José Jimeno-Yepes

Alan R. Aronson

BMC Bioinform., 2011

Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation.

[BibT_eX]

[DOI]

Alan R. Aronson

BMC Bioinform., 2011

The Ngram Statistics Package (Text: : NSP) : A Flexible Tool for Identifying Ngrams, Collocations, and Word Associations.

[BibT_eX]

[DOI]

Proceedings of the Workshop on Multiword Expressions: from Parsing and Generation to the Real World, 2011

Using Second-order Vectors in a Knowledge-based Method for Acronym Disambiguation.

[BibT_eX]

[DOI]

Genevieve B. Melton

Proceedings of the Fifteenth Conference on Computational Natural Language Learning, 2011

2010

Automated Identification of Synonyms in Biomedical Acronym Sense Inventories.

[BibT_eX]

[DOI]

Proceedings of the Second Louhi Workshop on Text and Data Mining of Health Documents, 2010

2009

UMLS-Interface and UMLS-Similarity : Open Source Software for Measuring Paths and Semantic Similarity.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2009, 2009

2008

An Unsupervised Vector Approach to Biomedical Term Disambiguation: Integrating UMLS and Medline.

[BibT_eX]

[DOI]

Proceedings of the ACL 2008, 2008

2007

Determining the Syntactic Structure of Medical Terms in Clinical Notes.

[BibT_eX]

[DOI]

Serguei Pakhomov

Proceedings of the Biological, translational, and clinical language processing, 2007

Using UMLS Concept Unique Identifiers (CUIs) for Word Sense Disambiguation in the Biomedical Domain.

[BibT_eX]

[DOI]

John Carlis

Proceedings of the AMIA 2007, 2007

2003

The Duluth Word Alignment System.

[BibT_eX]

[DOI]