Douglas Teodoro

Orcid: 0000-0001-6238-4503

According to our database1, Douglas Teodoro authored at least 54 papers between 2009 and 2023.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Links

On csauthors.net:

Bibliography

2023
Transformer Performance for Chemical Reactions: Analysis of Different Predictive and Evaluation Scenarios.
J. Chem. Inf. Model., April, 2023

Deep learning-based risk prediction for interventional clinical trials based on protocol design: A retrospective study.
Patterns, March, 2023

DS4DH at #SMM4H 2023: Zero-Shot Adverse Drug Events Normalization using Sentence Transformers and Reciprocal-Rank Fusion.
CoRR, 2023

Leveraging patient similarities via graph neural networks to predict phenotypes from temporal data.
Proceedings of the 10th IEEE International Conference on Data Science and Advanced Analytics, 2023

CardioBERTpt: Transformer-based Models for Cardiology Language Representation in Portuguese.
Proceedings of the 36th IEEE International Symposium on Computer-Based Medical Systems, 2023

DS4DH at MEDIQA-Chat 2023: Leveraging SVM and GPT-3 Prompt Engineering for Medical Dialogue Classification and Summarization.
Proceedings of the 5th Clinical Natural Language Processing Workshop, 2023

2022
DS4DH at SemEval-2022 Task 11: Multilingual Named Entity Recognition Using an Ensemble of Transformer-based Language Models.
Proceedings of the 16th International Workshop on Semantic Evaluation, SemEval@NAACL 2022, 2022

Vessel Destination Prediction Using a Graph-Based Machine Learning Model.
Proceedings of the Network Science - 7th International Winter Conference, 2022

Analyzing the Information Content of Text-Based Files in Supplementary Materials of Biomedical Literature.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022

Designing an Optimal Expansion Method to Improve the Recall of a Genomic Variant Curation-Support Service.
Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022

Efficient Joint Learning for Clinical Named Entity Recognition and Relation Extraction Using Fourier Networks: A Use Case in Adverse Drug Events.
Proceedings of the 19th International Conference on Natural Language Processing, 2022

Cluster Analysis of Low-Dimensional Medical Concept Representations from Electronic Health Records.
Proceedings of the Health Information Science - 11th International Conference, 2022

On Graph Construction for Classification of Clinical Trials Protocols Using Graph Neural Networks.
Proceedings of the Artificial Intelligence in Medicine, 2022

2021
UniProt: the universal protein knowledgebase in 2021.
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Nucleic Acids Res., 2021

Ensemble of Deep Masked Language Models for Effective Named Entity Recognition in Health and Life Science Corpora.
Frontiers Res. Metrics Anal., 2021

Vaccine Development in the Time of COVID-19: The Relevance of the Risklick AI to Assist in Risk Assessment and Optimize Performance.
Frontiers Digit. Health, 2021

DS4DH at TREC Health Misinformation 2021: Multi-Dimensional Ranking Models with Transfer Learning and Rank Fusion.
Proceedings of the Thirtieth Text REtrieval Conference, 2021

Classification of hierarchical text using geometric deep learning: the case of clinical trials corpus.
Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing, 2021

2020
UPCLASS: a deep learning-based classifier for UniProtKB entry publications.
Database J. Biol. Databases Curation, 2020

Contextualized French Language Models for Biomedical Named Entity Recognition.
Proceedings of the Actes de la 6e conférence conjointe Journées d'Études sur la Parole (JEP, 2020


Named Entity Recognition in Chemical Patents using Ensemble of Contextual Language Models.
Proceedings of the Working Notes of CLEF 2020, 2020

BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models.
Proceedings of the Sixth Workshop on Noisy User-generated Text, 2020

BioBERTpt - A Portuguese Neural Language Model for Clinical Named Entity Recognition.
Proceedings of the 3rd Clinical Natural Language Processing Workshop, 2020

2019
SIB Text Mining at TREC 2019 Deep Learning Track: Working Note.
Proceedings of the Twenty-Eighth Text REtrieval Conference, 2019

A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts.
Proceedings of the Working Notes of CLEF 2019, 2019

A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts.
Proceedings of the Working Notes of CLEF 2019, 2019

2017
Archetypes for Representing Data about the Brazilian Public Hospital Information System and Outpatient High Complexity Procedures System.
CoRR, 2017

Design of an Integrated Analytics Platform for Healthcare Assessment Centered on the Episode of Care.
CoRR, 2017

Improving average ranking precision in user searches for biomedical research datasets.
Database J. Biol. Databases Curation, 2017

Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine.
Proceedings of The Twenty-Sixth Text REtrieval Conference, 2017

2014
DebugIT: Ontology-mediated Layered Data Integration for Real-time Antibiotics Resistance Surveillance.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

2012
Data integration and trend analysis for surveillance of antimicrobial resistance.
PhD thesis, 2012

An advanced search engine for patent analytics in medicinal chemistry.
Proceedings of the Quality of Life through Quality of Information, 2012

Data Definition Ontology for clinical data integration and querying.
Proceedings of the Quality of Life through Quality of Information, 2012

Pathogens and Gene Product Normalization in the Biomedical Literature.
Proceedings of the Large Scale Projects in eHealth, 2012

A User-Friendly Tool for Medical-Related Patent Retrieval.
Proceedings of the Large Scale Projects in eHealth, 2012

2011
BiTeM Group Report for TREC Medical Records Track 2011.
Proceedings of The Twentieth Text REtrieval Conference, 2011

BiTeM Group Report for TREC Chemical IR Track 2011.
Proceedings of The Twentieth Text REtrieval Conference, 2011

Interoperability Driven Integration of Biomedical Data Sources.
Proceedings of the User Centered Networked Health Care - Proceedings of MIE 2011, 2011

Using Multimodal Mining to Drive Clinical Guidelines Development.
Proceedings of the User Centered Networked Health Care - Proceedings of MIE 2011, 2011

2010
BiTeM site Report for TREC Chemistry 2010: Impact of Citations Feeback for Patent Prior Art Search and Chemical Compounds Expansion for Ad Hoc Retrieval.
Proceedings of The Nineteenth Text REtrieval Conference, 2010

Automatic IPC Encoding and Novelty Tracking for Effective Patent Mining.
Proceedings of the 8th NTCIR Workshop Meeting on Evaluation of Information Access Technologies: Information Retrieval, 2010

The DebugIT Core Ontology: semantic integration of antibiotics resistance patterns.
Proceedings of the MEDINFO 2010, 2010

Ensuring HL7-based information model requirements within an ontology framework.
Proceedings of the MEDINFO 2010, 2010

Partage de Données Biomédicales sur le Web Sémantique.
Proceedings of the Web Sémantique Médical workshop, 2010

Automatic Prior Art Searching and Patent Encoding at CLEF-IP '10.
Proceedings of the CLEF 2010 LABs and Workshops, 2010

2009
Report on the TREC 2009 Experiments: Chemical IR Track.
Proceedings of The Eighteenth Text REtrieval Conference, 2009

Biomedical Data Management: A Proposal Framework.
Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009

Automatic Medical Knowledge Acquisition Using Question-Answering.
Proceedings of the Medical Informatics in a United and Healthy Europe - Proceedings of MIE 2009, The XXIInd International Congress of the European Federation for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August 30, 2009

Exploring a Wide Range of Simple Pre and Post Processing Strategies for Patent Searching in CLEF IP 2009.
Proceedings of the Working Notes for CLEF 2009 Workshop co-located with the 13th European Conference on Digital Libraries (ECDL 2009) , Corfù, Greece, September 30, 2009

Taking Benefit of Query and Document Expansion using MeSH Descriptors in Medical ImageCLEF 2009.
Proceedings of the Working Notes for CLEF 2009 Workshop co-located with the 13th European Conference on Digital Libraries (ECDL 2009) , Corfù, Greece, September 30, 2009

Simple Pre and Post Processing Strategies for Patent Searching in CLEF Intellectual Property Track 2009.
Proceedings of the Multilingual Information Access Evaluation I. Text Retrieval Experiments, 2009

QA-driven Guidelines Generation for Bacteriotherapy.
Proceedings of the AMIA 2009, 2009


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