Andre Lamurias

According to our database1, Andre Lamurias authored at least 27 papers between 2014 and 2021.

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Bibliography

2021
Using Neural Networks for Relation Extraction from Biomedical Literature.
Proceedings of the Artificial Neural Networks - Third Edition., 2021

2020
Linking chemical and disease entities to ontologies by integrating PageRank with extracted relations from literature.
J. Cheminformatics, 2020

Generating Scientific Question Answering Corpora from Q&A forums.
CoRR, 2020

Generating Biomedical Question Answering Corpora From Q&A Forums.
IEEE Access, 2020

COVID-19: A Semantic-Based Pipeline for Recommending Biomedical Entities.
Proceedings of the 1st Workshop on NLP for COVID-19@ EMNLP 2020, Online, December 2020, 2020

Towards a Multilingual Corpus for Named Entity Linking Evaluation in the Clinical Domain.
Proceedings of the Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages co-located with 42nd European Conference on Information Retrieval, 2020

Biomedical Question Answering using Extreme Multi-Label Classification and Ontologies in the Multilingual Panorama.
Proceedings of the Workshop on Semantic Indexing and Information Retrieval for Health from heterogeneous content types and languages co-located with 42nd European Conference on Information Retrieval, 2020

LasigeBioTM Team at CLEF2020 ChEMU Evaluation Lab: Named Entity Recognition and Event extraction from chemical reactions described in patents using BioBERT NER and RE.
Proceedings of the Working Notes of CLEF 2020, 2020

Extreme Multi-Label Classification applied to the Biomedical and Multilingual Panorama.
Proceedings of the Working Notes of CLEF 2020, 2020


2019
Text Mining for Bioinformatics Using Biomedical Literature.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Semantic Similarity Definition.
Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 1, 2019

Using Neural Networks for Relation Extraction from Biomedical Literature.
CoRR, 2019

PPR-SSM: personalized PageRank and semantic similarity measures for entity linking.
BMC Bioinform., 2019

A Silver Standard Corpus of Human Phenotype-Gene Relations.
Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2019

LasigeBioTM at MEDIQA 2019: Biomedical Question Answering using Bidirectional Transformers and Named Entity Recognition.
Proceedings of the 18th BioNLP Workshop and Shared Task, 2019

2018
MER: a shell script and annotation server for minimal named entity recognition and linking.
J. Cheminformatics, 2018

2017
ULISBOA at SemEval-2017 Task 12: Extraction and classification of temporal expressions and events.
Proceedings of the 11th International Workshop on Semantic Evaluation, 2017

2016
WS4A: a Biomedical Question and Answering System based on public Web Services and Ontologies.
CoRR, 2016

ULISBOA at SemEval-2016 Task 12: Extraction of temporal expressions, clinical events and relations using IBEnt.
Proceedings of the 10th International Workshop on Semantic Evaluation, 2016

Extraction of Regulatory Events using Kernel-based Classifiers and Distant Supervision.
Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, 2016

2015
Improving chemical entity recognition through h-index based semantic similarity.
J. Cheminformatics, 2015

The CHEMDNER corpus of chemicals and drugs and its annotation principles.
J. Cheminformatics, 2015

IICE: Web Tool for Automatic Identification of Chemical Entities and Interactions.
Proceedings of the Machine Learning and Knowledge Discovery in Databases, 2015

Annotating biomedical ontology terms in electronic health records using crowd-sourcing.
Proceedings of the International Conference on Biomedical Ontology, 2015

2014
Identifying interactions between chemical entities in biomedical text.
J. Integr. Bioinform., 2014

Chemical Named Entity Recognition: Improving Recall Using a Comprehensive List of Lexical Features.
Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014


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