Jakub Kaczmarzyk

According to our database, Jakub Kaczmarzyk authored at least 11 papers between 2018 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification.

Jakub R. Kaczmarzyk, Rajarsi Gupta, Tahsin M. Kurç, Shahira Abousamra, Joel H. Saltz, Peter K. Koo

Comput. Methods Programs Biomed., September, 2023

Open and reusable deep learning for pathology with WSInfer and QuPath.

Jakub R. Kaczmarzyk, Alan O'Callaghan, Fiona Inglis, Tahsin M. Kurç, Rajarsi Gupta, Erich Bremer, Peter Bankhead, Joel H. Saltz

CoRR, 2023

2022

AI and Pathology: Steering Treatment and Predicting Outcomes.

Rajarsi Gupta, Jakub Kaczmarzyk, Soma Kobayashi, Tahsin M. Kurç, Joel H. Saltz

CoRR, 2022

Evaluating histopathology transfer learning with ChampKit.

Jakub R. Kaczmarzyk, Tahsin M. Kurç, Shahira Abousamra, Rajarsi Gupta, Joel H. Saltz, Peter K. Koo

CoRR, 2022

A Novel Framework for Characterization of Tumor-Immune Spatial Relationships in Tumor Microenvironment.

Mahmudul Hasan, Jakub R. Kaczmarzyk, David Paredes, Lyanne Oblein, Jaymie Oentoro, Shahira Abousamra, Michael Horowitz, Dimitris Samaras, Chao Chen, Tahsin M. Kurç, Kenneth R. Shroyer, Joel H. Saltz

CoRR, 2022

2020

Pydra - a flexible and lightweight dataflow engine for scientific analyses.

Dorota Jarecka, Mathias Goncalves, Christopher J. Markiewicz, Oscar Esteban, Nicole Lo, Jakub Kaczmarzyk, Satrajit S. Ghosh

Proceedings of the 19th Python in Science Conference 2020 (SciPy 2020), Virtual Conference, July 6, 2020

2019

Knowing What You Know in Brain Segmentation Using Bayesian Deep Neural Networks.

Patrick McClure, Nao Rho, John A. Lee, Jakub R. Kaczmarzyk, Charles Y. Zheng, Satrajit S. Ghosh, Dylan Nielson, Adam G. Thomas, Peter A. Bandettini, Francisco Pereira

Frontiers Neuroinformatics, 2019

Everything Matters: The ReproNim Perspective on Reproducible Neuroimaging.

David N. Kennedy, Sanu Ann Abraham, Julianna F. Bates, Albert Crowley, Satrajit S. Ghosh, Tom Gillespie, Mathias Goncalves, Jeffrey S. Grethe, Yaroslav O. Halchenko, Michael Hanke, Christian Haselgrove, Steven M. Hodge, Dorota Jarecka, Jakub Kaczmarzyk, David B. Keator, Kyle Meyer, Maryann E. Martone, Smruti Padhy, Jean-Baptiste Poline, Nina Preuss, Troy Sincomb, Matt Travers

Frontiers Neuroinformatics, 2019

2018

Knowing what you know in brain segmentation using deep neural networks.

Patrick McClure, Nao Rho, John A. Lee, Jakub R. Kaczmarzyk, Charles Y. Zheng, Satrajit S. Ghosh, Dylan Nielson, Adam G. Thomas, Peter A. Bandettini, Francisco Pereira

CoRR, 2018

Parallel Weight Consolidation: A Brain Segmentation Case Study.

Patrick McClure, Charles Y. Zheng, Francisco Pereira, Jakub Kaczmarzyk, John Rogers-Lee, Dylan Nielson, Peter A. Bandettini

CoRR, 2018

Distributed Weight Consolidation: A Brain Segmentation Case Study.

Patrick McClure, Charles Y. Zheng, Jakub Kaczmarzyk, John Rogers-Lee, Satrajit S. Ghosh, Dylan Nielson, Peter A. Bandettini, Francisco Pereira

Proceedings of the Advances in Neural Information Processing Systems 31: Annual Conference on Neural Information Processing Systems 2018, 2018