K. Vijay-Shanker
Orcid: 0000-0003-0958-3073
According to our database1,
K. Vijay-Shanker
authored at least 132 papers
between 1986 and 2023.
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Bibliography
2023
ArTrivia: Harvesting Arabic Wikipedia to Build A New Arabic Question Answering Dataset.
Proceedings of ArabicNLP 2023, Singapore (Hybrid), December 7, 2023, 2023
Proceedings of the 14th ACM International Conference on Bioinformatics, 2023
2022
CoRR, 2022
Investigation of improving the pre-training and fine-tuning of BERT model for biomedical relation extraction.
BMC Bioinform., 2022
Exploring Biomedical Question Answering with BioM-Transformers At BioASQ10B challenge: Findings and Techniques.
Proceedings of the Working Notes of CLEF 2022 - Conference and Labs of the Evaluation Forum, Bologna, Italy, September 5th - to, 2022
2021
CU-UD: text-mining drug and chemical-protein interactions with ensembles of BERT-based models.
CoRR, 2021
Database J. Biol. Databases Curation, 2021
Proceedings of the 20th Workshop on Biomedical Language Processing, 2021
2020
Adversarial Learning for Supervised and Semi-supervised Relation Extraction in Biomedical Literature.
CoRR, 2020
Proceedings of the IEEE International Conference on Software Maintenance and Evolution, 2020
Investigation of BERT Model on Biomedical Relation Extraction Based on Revised Fine-tuning Mechanism.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020
2019
Exploring word embedding techniques to improve sentiment analysis of software engineering texts.
Proceedings of the 16th International Conference on Mining Software Repositories, 2019
2018
iPTMnet: an integrated resource for protein post-translational modification network discovery.
Nucleic Acids Res., 2018
BMC Medical Informatics Decis. Mak., 2018
Identification of key differentially expressed MicroRNAs in cancer patients through pan-cancer analysis.
Comput. Biol. Medicine, 2018
iTextMine: integrated text-mining system for large-scale knowledge extraction from the literature.
Database J. Biol. Databases Curation, 2018
Database J. Biol. Databases Curation, 2018
Proceedings of the Emerging Technologies for Education - Third International Symposium, 2018
2017
BMC Bioinform., 2017
eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality.
Database J. Biol. Databases Curation, 2017
Automatically generating natural language descriptions for object-related statement sequences.
Proceedings of the IEEE 24th International Conference on Software Analysis, 2017
Proceedings of The Twenty-Sixth Text REtrieval Conference, 2017
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017
2016
J. Biomed. Semant., 2016
BioC-compatible full-text passage detection for protein-protein interactions using extended dependency graph.
Database J. Biol. Databases Curation, 2016
BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID.
Database J. Biol. Databases Curation, 2016
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016
2015
RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015
PLoS Comput. Biol., 2015
Construction of phosphorylation interaction networks by text mining of full-length articles using the eFIP system.
Database J. Biol. Databases Curation, 2015
Proceedings of the 30th IEEE/ACM International Conference on Automated Software Engineering Workshops, 2015
Developing a model of loop actions by mining loop characteristics from a large code corpus.
Proceedings of the 2015 IEEE International Conference on Software Maintenance and Evolution, 2015
Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015
2014
J. Softw. Evol. Process., 2014
A Generalizable NLP Framework for Fast Development of Pattern-based Biomedical Relation Extraction Systems.
BMC Bioinform., 2014
RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.
Database J. Biol. Databases Curation, 2014
iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system.
Database J. Biol. Databases Curation, 2014
2013
A framework for biomedical figure segmentation towards image-based document retrieval.
BMC Syst. Biol., 2013
Automatically mining software-based, semantically-similar words from comment-code mappings.
Proceedings of the 10th Working Conference on Mining Software Repositories, 2013
Proceedings of the 10th Working Conference on Mining Software Repositories, 2013
Proceedings of the IEEE 21st International Conference on Program Comprehension, 2013
Proceedings of the IEEE 21st International Conference on Program Comprehension, 2013
Part-of-speech tagging of program identifiers for improved text-based software engineering tools.
Proceedings of the IEEE 21st International Conference on Program Comprehension, 2013
Proceedings of the 2013 IEEE International Conference on Software Maintenance, 2013
Text Mining of Protein Phosphorylation Information Using a Generalizable Rule-Based Approach.
Proceedings of the ACM Conference on Bioinformatics, 2013
An Image-Text Approach for Extracting Experimental Evidence of Protein-Protein Interactions in the Biomedical Literature.
Proceedings of the ACM Conference on Bioinformatics, 2013
2012
The eFIP system for text mining of protein interaction networks of phosphorylated proteins.
Database J. Biol. Databases Curation, 2012
Database J. Biol. Databases Curation, 2012
RankPref: Ranking Sentences Describing Relations between Biomedical Entities with an Application.
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
Improving interacting residue prediction using long-distance information in hidden Markov models.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
2011
Proceedings of the 18th Working Conference on Reverse Engineering, 2011
Improving source code search with natural language phrasal representations of method signatures.
Proceedings of the 26th IEEE/ACM International Conference on Automated Software Engineering (ASE 2011), 2011
Proceedings of the 19th IEEE International Conference on Program Comprehension, 2011
Proceedings of the Software Engineering - International Summer Schools, 2011
Proceedings of the 33rd International Conference on Software Engineering, 2011
Improving Transmembrane Protein Prediction by Increasing the Utilization of Local Information.
Proceedings of the ISCA 3rd International Conference on Bioinformatics and Computational Biology, 2011
2010
Proceedings of the ASE 2010, 2010
2009
Taking into Account the Differences between Actively and Passively Acquired Data: The Case of Active Learning with Support Vector Machines for Imbalanced Datasets.
Proceedings of the Human Language Technologies: Conference of the North American Chapter of the Association of Computational Linguistics, Proceedings, May 31, 2009
Proceedings of the 6th International Working Conference on Mining Software Repositories, 2009
Automatically capturing source code context of NL-queries for software maintenance and reuse.
Proceedings of the 31st International Conference on Software Engineering, 2009
A Method for Stopping Active Learning Based on Stabilizing Predictions and the Need for User-Adjustable Stopping.
Proceedings of the Thirteenth Conference on Computational Natural Language Learning, 2009
Proceedings of the Information Retrieval in Biomedicine, 2009
2008
Analysing source code: looking for useful verbdirect object pairs in all the right places.
IET Softw., 2008
AMAP: automatically mining abbreviation expansions in programs to enhance software maintenance tools.
Proceedings of the 2008 International Working Conference on Mining Software Repositories, 2008
Identifying Word Relations in Software: A Comparative Study of Semantic Similarity Tools.
Proceedings of the 16th IEEE International Conference on Program Comprehension, 2008
Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008
Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008
2007
Case study: supplementing program analysis with natural language analysis to improve a reverse engineering task.
Proceedings of the 7th ACM SIGPLAN-SIGSOFT Workshop on Program Analysis for Software Tools and Engineering, 2007
Proceedings of the 7th ACM SIGPLAN-SIGSOFT Workshop on Program Analysis for Software Tools and Engineering, 2007
Proceedings of the 22nd IEEE/ACM International Conference on Automated Software Engineering (ASE 2007), 2007
Proceedings of the EMNLP-CoNLL 2007, 2007
Proceedings of the Biological, translational, and clinical language processing, 2007
Using natural language program analysis to locate and understand action-oriented concerns.
Proceedings of the 6th International Conference on Aspect-Oriented Software Development, 2007
2006
Nat. Lang. Eng., 2006
Proceedings of the Workshop on Linking Natural Language and Biology, 2006
Proceedings of the 5th International Conference on Aspect-Oriented Software Development, 2006
2005
Comput. Intell., 2005
Literature mining and database annotation of protein phosphorylation using a rule-based system.
Bioinform., 2005
Proceedings of the Proceedings Thirteenth International Conference on Intelligent Systems for Molecular Biology 2005, 2005
2004
J. Biomed. Informatics, 2004
2003
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
Proceedings of the Workshop on Natural Language Processing in Biomedicine, 2003
Generation of Single-sentence Paraphrases from Predicate/Argument Structure using Lexico-grammatical Resources.
Proceedings of the Second International Workshop on Paraphrasing, 2003
2001
Nat. Lang. Eng., 2001
2000
Proceedings of the Sixth Internatonal Workshop on Parsing Technologies, 2000
1999
1998
Consistent grammar development using partial-tree descriptions for Lexicalized Tree-Adjoining Grammars.
Proceedings of the Fourth International Workshop on Tree Adjoining Grammars and Related Frameworks, 1998
Proceedings of the Fourth International Workshop on Tree Adjoining Grammars and Related Frameworks, 1998
Proceedings of the Fourth International Workshop on Tree Adjoining Grammars and Related Frameworks, 1998
Proceedings of the Fourth International Workshop on Tree Adjoining Grammars and Related Frameworks, 1998
An Investigation of Transformation-Based Learning in Discourse.
Proceedings of the Fifteenth International Conference on Machine Learning (ICML 1998), 1998
Proceedings of the 36th Annual Meeting of the Association for Computational Linguistics and 17th International Conference on Computational Linguistics, 1998
1997
Proceedings of the International Workshop on Parsing Technologies, 1997
1995
Proceedings of the Fourth International Workshop on Parsing Technologies, 1995
Proceedings of the 33rd Annual Meeting of the Association for Computational Linguistics, 1995
Proceedings of the 33rd Annual Meeting of the Association for Computational Linguistics, 1995
1994
Math. Syst. Theory, 1994
Comput. Intell., 1994
1993
Parsing Some Constrained Grammar Formalisms.
Comput. Linguistics, 1993
Proceedings of the Sixth Conference of the European Chapter of the Association for Computational Linguistics, 1993
1992
Using Descriptions of Trees in a Tree Adjoining Grammar.
Comput. Linguistics, 1992
Proceedings of the 14th International Conference on Computational Linguistics, 1992
Proceedings of the 30th Annual Meeting of the Association for Computational Linguistics, 28 June, 1992
Proceedings of the 30th Annual Meeting of the Association for Computational Linguistics, 28 June, 1992
1990
An Interpretation of Negation in Feature Structure Descriptions.
Comput. Linguistics, 1990
Proceedings of the First International Workshop on Tree Adjoining Grammar and Related Frameworks, 1990
Proceedings of the Fifth International Workshop on Natural Language Generation, 1990
Proceedings of the 28th Annual Meeting of the Association for Computational Linguistics, 1990
Proceedings of the 28th Annual Meeting of the Association for Computational Linguistics, 1990
1989
Proceedings of the A Perspective in Theoretical Computer Science, 1989
Proceedings of the First International Workshop on Parsing Technologies, 1989
Treatment of Long Distance Dependencies in LFG and TAG: Functional Uncertainty in LFG is a Corollary in TAG.
Proceedings of the 27th Annual Meeting of the Association for Computational Linguistics, 1989
Proceedings of the 27th Annual Meeting of the Association for Computational Linguistics, 1989
1988
Proceedings of the 12th International Conference on Computational Linguistics, 1988
1987
Proceedings of the 25th Annual Meeting of the Association for Computational Linguistics, 1987
1986
Proceedings of the Strategic Computing, 1986
Proceedings of the 11th International Conference on Computational Linguistics, 1986
Proceedings of the 24th Annual Meeting of the Association for Computational Linguistics, 1986