Michal Kozubek

Orcid: 0000-0001-7902-589X

Affiliations:
  • Masaryk University, Brno, Czech Republic


According to our database1, Michal Kozubek authored at least 36 papers between 2002 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

Online presence:

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Bibliography

2024
Brain MRI Screening Tool with Federated Learning.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

Gravitational Cell Detection and Tracking in Fluorescence Microscopy Data.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

2023
Brain MRI Screening Tool with Federated Learning.
CoRR, 2023

Why is the winner the best?
CoRR, 2023

Understanding metric-related pitfalls in image analysis validation.
CoRR, 2023

Why is the Winner the Best?
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Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023

2022
Biomedical image analysis competitions: The state of current participation practice.
CoRR, 2022

Metrics reloaded: Pitfalls and recommendations for image analysis validation.
CoRR, 2022

2021
Common Limitations of Image Processing Metrics: A Picture Story.
CoRR, 2021

2020
BIAS: Transparent reporting of biomedical image analysis challenges.
Medical Image Anal., 2020

Condensed U-Net (Cu-Net): An Improved U-Net Architecture for Cell Segmentation Powered by 4x4 Max-Pooling Layers.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

2019
CytoPacq: a web-interface for simulating multi-dimensional cell imaging.
Bioinform., 2019

2018
Is the winner really the best? A critical analysis of common research practice in biomedical image analysis competitions.
CoRR, 2018


Automatic Fusion of Segmentation and Tracking Labels.
Proceedings of the Computer Vision - ECCV 2018 Workshops, 2018

2017
Image-based surrogate biomarkers for molecular subtypes of colorectal cancer.
Bioinform., 2017

Multimodal Simulations in Live Cell Imaging.
Proceedings of the Simulation and Synthesis in Medical Imaging, 2017

2015
Toward a Morphodynamic Model of the Cell: Signal processing for cell modeling.
IEEE Signal Process. Mag., 2015

Quantitative Bioimaging: Signal Processing in Light Microscopy [From the Guest Editors].
IEEE Signal Process. Mag., 2015

Quantification of the 3D collagen network geometry in confocal reflection microscopy.
Proceedings of the 2015 IEEE International Conference on Image Processing, 2015

Characterization of the role of collagen network structure and composition in cancer cell migration.
Proceedings of the 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2015

2014
A benchmark for comparison of cell tracking algorithms.
Bioinform., 2014

2012
Smooth Chan-Vese segmentation via graph cuts.
Pattern Recognit. Lett., 2012

2010
Simultaneous Tracking of Multiple Objects Using Fast Level Set-Like Algorithm.
Proceedings of the Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science, 2010

A Fast Level Set-Like Algorithm for Region-Based Active Contours.
Proceedings of the Advances in Visual Computing - 6th International Symposium, 2010

2009
A Two-Phase Segmentation of Cell Nuclei Using Fast Level Set-Like Algorithms.
Proceedings of the Image Analysis, 16th Scandinavian Conference, 2009

Segmentation of Touching Cell Nuclei Using a Two-Stage Graph Cut Model.
Proceedings of the Image Analysis, 16th Scandinavian Conference, 2009

Acquiarium: Free Software for the Acquisition and Analysis of 3D Images of Cells in Fluorescence Microscopy.
Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

2007
A Comparison of Fast Level Set-Like Algorithms for Image Segmentation in Fluorescence Microscopy.
Proceedings of the Advances in Visual Computing, Third International Symposium, 2007

2006
Fast point-based 3-D alignment of live cells.
IEEE Trans. Image Process., 2006

2004
Automated Confocal Microscopy: The Way of Achieving both Quality and Quantity in 3D Image Cytometry.
Proceedings of the 2004 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2004

Applications of Image Registration in Human Genome Research.
Proceedings of the Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis, 2004

Fast Marching 3D Reconstruction of Interphase Chromosomes.
Proceedings of the Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis, 2004

High-Resolution Cytometry Network Project: Client/Server System for 3D Optical Microscope Data Storage and Analysis.
Proceedings of the 2nd International Symposium on 3D Data Processing, 2004

2002
High-Resolution Cytometry Network Project: Towards Remote a d Distributed Acquisition, Processing and Visualisation of 3D Image Data in Human Genome Research.
Proceedings of the 1st International Symposium on 3D Data Processing Visualization and Transmission (3DPVT 2002), 2002

Automated Multi-view 3D Image Acquisition in Human Genome Research.
Proceedings of the 1st International Symposium on 3D Data Processing Visualization and Transmission (3DPVT 2002), 2002


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