Paul N. Schofield

According to our database, Paul N. Schofield authored at least 46 papers between 2004 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Klarigi: Characteristic explanations for semantic biomedical data.

Luke T. Slater, John A. Williams, Paul N. Schofield, Sophie Russell, Samantha C. Pendleton, Andreas Karwath, Hilary Fanning, Simon Ball, Robert Hoehndorf, Georgios V. Gkoutos

Comput. Biol. Medicine, February, 2023

Updating the CEMO ontology for future epidemiological challenges.

Núria Queralt-Rosinach, Paul N. Schofield, Marco Roos, Robert Hoehndorf

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

2021

Multi-faceted semantic clustering with text-derived phenotypes.

Luke T. Slater, John A. Williams, Andreas Karwath, Hilary Fanning, Simon Ball, Paul N. Schofield, Robert Hoehndorf, Georgios V. Gkoutos

Comput. Biol. Medicine, 2021

Linking common human diseases to their phenotypes; development of a resource for human phenomics.

Senay Kafkas, Sara Althubaiti, Georgios V. Gkoutos, Robert Hoehndorf, Paul N. Schofield

J. Biomed. Semant., 2021

Reuse of Design Pattern Measurements for Health Data.

Núria Queralt-Rosinach, Mark D. Wilkinson, Rajaram Kaliyaperumal, César Henrique Bernabé, Qinqin Long, Michel Dumontier, Paul N. Schofield, Marco Roos

Proceedings of the Joint Ontology Workshops 2021 Episode VII: The Bolzano Summer of Knowledge co-located with the 12th International Conference on Formal Ontology in Information Systems (FOIS 2021), 2021

Exploring Sentiment as a Potential Indicator of Bias in Disease Ontologies.

Luke T. Slater, John A. Williams, Paul N. Schofield, Georgios V. Gkoutos

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2019

DeepPVP: phenotype-based prioritization of causative variants using deep learning.

Imane Boudellioua, Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf

BMC Bioinform., December, 2019

2018

Survey on data management in radiation protection research.

Balázs G. Madas, Paul N. Schofield

CoRR, 2018

Ontology-based validation and identification of regulatory phenotypes.

Maxat Kulmanov, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf

Bioinform., 2018

The anatomy of phenotype ontologies: principles, properties and applications.

Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf

Briefings Bioinform., 2018

2017

Semantic prioritization of novel causative genomic variants.

Imane Boudellioua, Rozaimi B. Mahamad Razali, Maxat Kulmanov, Yasmeen Hashish, Vladimir B. Bajic, Eva Goncalves-Serra, Nadia Schoenmakers, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf

PLoS Comput. Biol., 2017

Integrating phenotype ontologies with PhenomeNET.

Miguel Ángel Rodríguez-García, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf

J. Biomed. Semant., 2017

2016

Using AberOWL for fast and scalable reasoning over BioPortal ontologies.

Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf

J. Biomed. Semant., 2016

DermO; an ontology for the description of dermatologic disease.

Hannah M. Fisher, Robert Hoehndorf, Bruno S. Bazelato, Soheil S. Dadras, Lloyd E. King, Georgios V. Gkoutos, John P. Sundberg, Paul N. Schofield

J. Biomed. Semant., 2016

To MIREOT or not to MIREOT? A Case Study of the Impact of Using MIREOT in the Experimental Factor Ontology (EFO).

Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Updates to the AberOWL Ontology Repository.

Miguel Ángel Rodríguez-García, Luke T. Slater, Imane Boudellioua, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf

Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Large-Scale Reasoning over Functions in Biomedical Ontologies.

Robert Hoehndorf, Liam Mencel, Georgios V. Gkoutos, Paul N. Schofield

Proceedings of the Formal Ontology in Information Systems, 2016

2015

Aber-OWL: a framework for ontology-based data access in biology.

Robert Hoehndorf, Luke T. Slater, Paul N. Schofield, Georgios V. Gkoutos

BMC Bioinform., 2015

Similarity-based search of model organism, disease and drug effect phenotypes.

Robert Hoehndorf, Michael Gruenberger, Georgios V. Gkoutos, Paul N. Schofield

J. Biomed. Semant., 2015

The role of ontologies in biological and biomedical research: a functional perspective.

Robert Hoehndorf, Paul N. Schofield, Georgios V. Gkoutos

Briefings Bioinform., 2015

Visualising Ontologies with AberOWL.

Miguel Ángel Rodríguez-García, Luke T. Slater, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning.

Luke T. Slater, Miguel Ángel Rodríguez-García, Keiron O'Shea, Paul N. Schofield, Georgios V. Gkoutos, Robert Hoehndorf

Proceedings of the Ontology Engineering, 2015

AberOWL: an ontology portal with OWL EL reasoning.

Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf

Proceedings of the International Conference on Biomedical Ontology, 2015

Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies.

Luke T. Slater, Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf

Proceedings of the International Conference on Biomedical Ontology, 2015

2014

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.

Sebastian Köhler, Sandra C. Doelken, Christopher J. Mungall, Sebastian Bauer, Helen V. Firth, Isabelle Bailleul-Forestier, Graeme C. M. Black, Danielle L. Brown, Michael Brudno, Jennifer Campbell, David R. FitzPatrick, Janan T. Eppig, Andrew P. Jackson, Kathleen Freson, Marta Gîrdea, Ingo Helbig, Jane A. Hurst, Johanna Jähn, Laird G. Jackson, Anne M. Kelly, David H. Ledbetter, Sahar Mansour, Christa L. Martin, Celia Moss, Andrew D. Mumford, Willem H. Ouwehand, Soo-Mi Park, Erin Rooney Riggs, Richard H. Scott, Sanjay Sisodiya, Steven Van Vooren, Ronald J. Wapner, Andrew O. M. Wilkie, Caroline F. Wright, Anneke T. Vulto-van Silfhout, Nicole de Leeuw, Bert B. A. de Vries, Nicole L. Washington, Cynthia L. Smith, Monte Westerfield, Paul N. Schofield, Barbara J. Ruef, Georgios V. Gkoutos, Melissa A. Haendel, Damian Smedley, Suzanna E. Lewis, Peter N. Robinson

Nucleic Acids Res., 2014

Mouse model phenotypes provide information about human drug targets.

Robert Hoehndorf, Tanya Hiebert, Nigel W. Hardy, Paul N. Schofield, Georgios V. Gkoutos, Michel Dumontier

Bioinform., 2014

2013

The mouse pathology ontology, MPATH; structure and applications.

Paul N. Schofield, John P. Sundberg, Beth A. Sundberg, Colin McKerlie, Georgios V. Gkoutos

J. Biomed. Semant., 2013

2012

The Units Ontology: a tool for integrating units of measurement in science.

Georgios V. Gkoutos, Paul N. Schofield, Robert Hoehndorf

Database J. Biol. Databases Curation, 2012

Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.

Pascale Gaudet, Cecilia N. Arighi, Frederic B. Bastian, Alex Bateman, Judith A. Blake, J. Michael Cherry, Peter D'Eustachio, Robert D. Finn, Michelle G. Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica C. Munoz-Torres, Darren A. Natale, Claire O'Donovan, B. F. Francis Ouellette, Kim D. Pruitt, Marc Robinson-Rechavi, Susanna-Assunta Sansone, Paul N. Schofield, Granger G. Sutton, Kimberly Van Auken, Sona Vasudevan, Cathy H. Wu, Jasmine Young, Raja Mazumder

Database J. Biol. Databases Curation, 2012

Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing.

Robert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

2011

Improving ontologies by automatic reasoning and evaluation of logical definitions.

Sebastian Köhler, Sebastian Bauer, Chris Mungall, Gabriele Carletti, Cynthia L. Smith, Paul N. Schofield, Georgios V. Gkoutos, Peter N. Robinson

BMC Bioinform., 2011

Anatomy ontologies and potential users: bridging the gap.

Ravensara S. Travillian, Tomasz Adamusiak, Tony Burdett, Michael Gruenberger, John M. Hancock, Ann-Marie Mallon, James Malone, Paul N. Schofield, Helen E. Parkinson

J. Biomed. Semant., 2011

A common layer of interoperability for biomedical ontologies based on OWL EL.

Robert Hoehndorf, Michel Dumontier, Anika Oellrich, Sarala M. Wimalaratne, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos

Bioinform., 2011

Towards BioDBcore: a community-defined information specification for biological databases.

Pascale Gaudet, Amos Bairoch, Dawn Field, Susanna-Assunta Sansone, Chris F. Taylor, Teresa K. Attwood, Alex Bateman, Judith A. Blake, Carol J. Bult, J. Michael Cherry, Rex L. Chisholm, Guy Cochrane, Charles E. Cook, Janan T. Eppig, Michael Y. Galperin, Robert Gentleman, Carole A. Goble, Takashi Gojobori, John M. Hancock, Douglas G. Howe, Tadashi Imanishi, Janet Kelso, David Landsman, Suzanna E. Lewis, Ilene Karsch-Mizrachi, Sandra E. Orchard, B. F. Francis Ouellette, Shoba Ranganathan, Lorna J. Richardson, Philippe Rocca-Serra, Paul N. Schofield, Damian Smedley, Christopher Southan, Tin Wee Tan, Tatiana A. Tatusova, Patricia L. Whetzel, Owen White, Chisato Yamasaki

Database J. Biol. Databases Curation, 2011

The Vertebrate Bridging Ontology (VBO).

Ravensara S. Travillian, James Malone, Chao Pang, John M. Hancock, Peter W. H. Holland, Paul N. Schofield, Helen E. Parkinson

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010

Mouse Resource Browser - a database of mouse databases.

Michael Zouberakis, Christina Chandras, Morris A. Swertz, Damian Smedley, Michael Gruenberger, Jonathan B. L. Bard, Klaus Schughart, Nadia A. Rosenthal, John M. Hancock, Paul N. Schofield, George Kollias, Vassilis Aidinis

Database J. Biol. Databases Curation, 2010

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences.

Damian Smedley, Paul N. Schofield, Chao-Kung Chen, Vassilis Aidinis, Crysanthi Ainali, Jonathan B. L. Bard, Rudi Balling, Ewan Birney, Andrew Blake, Erik Bongcam-Rudloff, Anthony J. Brookes, Gianni Cesareni, Christina Chandras, Janan T. Eppig, Paul Flicek, Georgios V. Gkoutos, Simon Greenaway, Michael Gruenberger, Jean-Karim Hériché, Andrew Lyall, Ann-Marie Mallon, Dawn Muddyman, Florian Reisinger, Martin Ringwald, Nadia A. Rosenthal, Klaus Schughart, Morris A. Swertz, Gudmundur A. Thorisson, Michael Zouberakis, John M. Hancock

Database J. Biol. Databases Curation, 2010

2009

Models for financial sustainability of biological databases and resources.

Christina Chandras, Thomas Weaver, Michael Zouberakis, Damian Smedley, Klaus Schughart, Nadia A. Rosenthal, John M. Hancock, George Kollias, Paul N. Schofield, Vassilis Aidinis

Database J. Biol. Databases Curation, 2009

2008

Towards a Disease Ontology.

Paul N. Schofield, Björn Rozell, Georgios V. Gkoutos

Proceedings of the Anatomy Ontologies for Bioinformatics, Principles and Practice, 2008

Solutions for data integration in functional genomics: a critical assessment and case study.

Damian Smedley, Morris A. Swertz, Katy Wolstencroft, Glenn Proctor, Michael Zouberakis, Jonathan B. L. Bard, John M. Hancock, Paul N. Schofield

Briefings Bioinform., 2008

The Mouse Resource Browser (MRB) - A near-complete registry of mouse resources.

Michael Zouberakis, Christina Chandras, John M. Hancock, Paul N. Schofield, Vassilis Aidinis

Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

Towards dynamic database infrastructures for mouse genetics.

Morris A. Swertz, Damian Smedley, Katy Wolstencroft, Rudi Alberts, Michael Zouberakis, Vassilis Aidinis, Klaus Schughart, Paul N. Schofield, Ritsert C. Jansen

Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

CASIMIR: Coordination and Sustainability of International Mouse Informatics Resources.

John M. Hancock, Paul N. Schofield, Christina Chandras, Michael Zouberakis, Vassilis Aidinis, Damian Smedley, Nadia A. Rosenthal, Klaus Schughart

Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

Digital preservation - financial sustainability of biological data and material resources.

Christina Chandras, Tom Weaver, Michael Zouberakis, John M. Hancock, Paul N. Schofield, Vassilis Aidinis

Proceedings of the 8th IEEE International Conference on Bioinformatics and Bioengineering, 2008

2007

State Complexity of Additive Weighted Finite Automata.

Kai Salomaa, Paul N. Schofield

Int. J. Found. Comput. Sci., 2007

2004

Pathbase: a database of mutant mouse pathology.

Paul N. Schofield, Jonathan B. L. Bard, Catherine Booth, Jacques Boniver, Vincenzo Covelli, Philippe Delvenne, Michele Ellender, Wilhelm Engstrom, Wolfgang Goessner, Michael Gruenberger, Heinz Hoefler, John Hopewell, Mariatheresa Mancuso, Carmel Mothersill, Christopher S. Potten, Leticia Quintanilla-Fend, Björn Rozell, Hannu Sariola, John P. Sundberg, Andrew Ward

Nucleic Acids Res., 2004