Sijia Liu
Orcid: 0000-0001-9763-1164Affiliations:
- Mayo Clinic, Rochester, MN, USA
- State University at New York at Buffalo, NY, USA (former)
According to our database1,
Sijia Liu
authored at least 60 papers
between 2015 and 2023.
Collaborative distances:
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Bibliography
2023
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C).
J. Am. Medical Informatics Assoc., November, 2023
The IMPACT framework and implementation for accessible in silico clinical phenotyping in the digital era.
npj Digit. Medicine, 2023
2022
Developing an ETL tool for converting the PCORnet CDM into the OMOP CDM to facilitate the COVID-19 data integration.
J. Biomed. Informatics, 2022
The NLP Sandbox: an efficient model-to-data system to enable federated and unbiased evaluation of clinical NLP models.
CoRR, 2022
Evaluation of mCODE Coverage in EHR: a Scoping Review of Cancer Natural Language Processing.
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022
Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022
Towards User-centered Corpus Development: Lessons Learnt from Designing and Developing MedTator.
Proceedings of the AMIA 2022, 2022
2021
An aberration detection-based approach for sentinel syndromic surveillance of COVID-19 and other novel influenza-like illnesses.
J. Biomed. Informatics, 2021
Modeling cancer clinical trials using HL7 FHIR to support downstream applications: A case study with colorectal cancer data.
Int. J. Medical Informatics, 2021
An Open Natural Language Processing Development Framework for EHR-based Clinical Research: A case demonstration using the National COVID Cohort Collaborative (N3C).
CoRR, 2021
On Constraints and Considerations for Extending Support for Natural Language Processing-Based FHIR Resource Generation.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
FHIRTime: Standardizing Temporal Patterns Identified from Clinical Narratives Using HL7 FHIR.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Disparity analysis of patient portal messaging use for COVID-19 in urban versus rural locality.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
Patient Asynchronous Response to Coronavirus Disease 2019 (COVID-19): A Retrospective Analysis of Patient Portal Messages.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
2020
Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events.
J. Am. Medical Informatics Assoc., 2020
A Query Taxonomy Describes Performance of Patient-Level Retrieval from Electronic Health Record Data.
Proceedings of the ACM WSDM 2020 Health Search and Data Mining Workshop, 2020
Predicting Section Location of Clinical Sentences using BERT Encoder - A Pilot Study.
Proceedings of the AMIA 2020, 2020
2019
Desiderata for delivering NLP to accelerate healthcare AI advancement and a Mayo Clinic NLP-as-a-service implementation.
npj Digit. Medicine, 2019
Deep learning and alternative learning strategies for retrospective real-world clinical data.
npj Digit. Medicine, 2019
A clinical text classification paradigm using weak supervision and deep representation.
BMC Medical Informatics Decis. Mak., 2019
BMC Medical Informatics Decis. Mak., 2019
Salience of Medical Concepts of Inside Clinical Texts and Outside Medical Records for Referred Cardiovascular Patients.
J. Heal. Informatics Res., 2019
HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node embeddings for the Human Phenotype Ontology.
J. Biomed. Informatics, 2019
Automated extraction of sudden cardiac death risk factors in hypertrophic cardiomyopathy patients by natural language processing.
Int. J. Medical Informatics, 2019
CoRR, 2019
CREATE: Cohort Retrieval Enhanced by Analysis of Text from Electronic Health Records using OMOP Common Data Model.
CoRR, 2019
Proceedings of the 2019 IEEE International Conference on Big Data (IEEE BigData), 2019
Clinical Use of an Information Retrieval Framework for Cohort Discovery from Electronic Health Records.
Proceedings of the AMIA 2019, 2019
2018
J. Biomed. Informatics, 2018
J. Biomed. Informatics, 2018
A Deep Representation Empowered Distant Supervision Paradigm for Clinical Information Extraction.
CoRR, 2018
Database J. Biol. Databases Curation, 2018
MayoNLPTeam at the TREC 2018 Precision Medicine Track: Simple Information Retrieval Approach Is the Best.
Proceedings of the Twenty-Seventh Text REtrieval Conference, 2018
Constructing Node Embeddings for Human Phenotype Ontology to Assist Phenotypic Similarity Measurement.
Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018
Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018
EMIRS: An Electronic Medical Information Retrieval System by Leveraging both Structured and Unstructured Electronic Health Records.
Proceedings of the AMIA 2018, 2018
Leveraging Electronic Health Records for Identification of Features Associated with Sudden Death for Hypertrophic Cardiomyopathy Patients.
Proceedings of the AMIA 2018, 2018
Proceedings of the AMIA 2018, 2018
2017
J. Assoc. Inf. Sci. Technol., 2017
MayoNLP at SemEval 2017 Task 10: Word Embedding Distance Pattern for Keyphrase Classification in Scientific Publications.
Proceedings of the 11th International Workshop on Semantic Evaluation, 2017
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017
Proceedings of the 2017 IEEE International Conference on Healthcare Informatics, 2017
Proceedings of the Summit on Clinical Research Informatics, 2017
Proceedings of the Summit on Clinical Research Informatics, 2017
Correlating Lab Test Results in Clinical Notes with Structured Lab Data: A Case Study in HbA1c and Glucose.
Proceedings of the Summit on Clinical Research Informatics, 2017
Medical concept intersection between outside medical records and consultant notes: A case study in transferred cardiovascular patients.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Dependency and AMR Embeddings for Drug-Drug Interaction Extraction from Biomedical Literature.
Proceedings of the 8th ACM International Conference on Bioinformatics, 2017
Recommending education materials for diabetic questions using information retrieval approaches.
Proceedings of the AMIA 2017, 2017
Proceedings of the AMIA 2017, 2017
Proceedings of the AMIA 2017, 2017
2016
An Ensemble Model of Clinical Information Extraction and Information Retrieval for Clinical Decision Support.
Proceedings of The Twenty-Fifth Text REtrieval Conference, 2016
LabLinker: Finding Links of Laboratory Test Results between Structured Records and Clinical Notes.
Proceedings of the 2016 IEEE International Conference on Healthcare Informatics, 2016
Proceedings of the Summit on Clinical Research Informatics, 2016
Proceedings of the Working Notes of CLEF 2016, 2016
Drug-drug Interaction Detection with A Topic-modeling Based Framework Augmented with Distant-supervision.
Proceedings of the AMIA 2016, 2016
A Topic-modeling Based Framework for Drug-drug Interaction Classification from Biomedical Text.
Proceedings of the AMIA 2016, 2016
2015
Spot counting on fluorescence in situ hybridization in suspension images using Gaussian mixture model.
Proceedings of the Medical Imaging 2015: Image Processing, 2015