Weixiong Zhang

According to our database1, Weixiong Zhang authored at least 119 papers between 1989 and 2019.

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Bibliography

2019
Network-Specific Variational Auto-Encoder for Embedding in Attribute Networks.
Proceedings of the Twenty-Eighth International Joint Conference on Artificial Intelligence, 2019

Graph Convolutional Networks Meet Markov Random Fields: Semi-Supervised Community Detection in Attribute Networks.
Proceedings of the Thirty-Third AAAI Conference on Artificial Intelligence, 2019

2018
A non-negative matrix factorization based method for predicting disease-associated miRNAs in miRNA-disease bilayer network.
Bioinformatics, 2018

A Fast Algorithm for Generalized Arc Consistency of the Alldifferent Constraint.
Proceedings of the Twenty-Seventh International Joint Conference on Artificial Intelligence, 2018

Integrative Network Embedding via Deep Joint Reconstruction.
Proceedings of the Twenty-Seventh International Joint Conference on Artificial Intelligence, 2018

Robust Detection of Link Communities in Large Social Networks by Exploiting Link Semantics.
Proceedings of the Thirty-Second AAAI Conference on Artificial Intelligence, 2018

A Network-Specific Markov Random Field Approach to Community Detection.
Proceedings of the Thirty-Second AAAI Conference on Artificial Intelligence, 2018

2017
Joint Identification of Network Communities and Semantics via Integrative Modeling of Network Topologies and Node Contents.
Proceedings of the Thirty-First AAAI Conference on Artificial Intelligence, 2017

2016
The complete parsimony haplotype inference problem and algorithms based on integer programming, branch-and-bound and Boolean satisfiability.
J. Discrete Algorithms, 2016

Modularity Based Community Detection with Deep Learning.
Proceedings of the Twenty-Fifth International Joint Conference on Artificial Intelligence, 2016

Semantic Community Identification in Large Attribute Networks.
Proceedings of the Thirtieth AAAI Conference on Artificial Intelligence, 2016

Detect Overlapping Communities via Ranking Node Popularities.
Proceedings of the Thirtieth AAAI Conference on Artificial Intelligence, 2016

2015
Modeling with Node Degree Preservation Can Accurately Find Communities.
Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence, 2015

A Stochastic Model for Detecting Heterogeneous Link Communities in Complex Networks.
Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence, 2015

Marginalized Denoising for Link Prediction and Multi-Label Learning.
Proceedings of the Twenty-Ninth AAAI Conference on Artificial Intelligence, 2015

2014
Identifying Cis-Regulatory Elements and Modules Using Conditional Random Fields.
IEEE/ACM Trans. Comput. Biology Bioinform., 2014

Ten Simple Rules for Writing Research Papers.
PLoS Computational Biology, 2014

Allele-Specific Network Reveals Combinatorial Interaction That Transcends Small Effects in Psoriasis GWAS.
PLoS Computational Biology, 2014

An Effective Algorithm for and Phase Transitions of the Directed Hamiltonian Cycle Problem.
CoRR, 2014

SAS+ Planning as Satisfiability.
CoRR, 2014

A Marginalized Denoising Method for Link Prediction in Relational Data.
Proceedings of the 2014 SIAM International Conference on Data Mining, 2014

2013
A SAT-based approach to cost-sensitive temporally expressive planning.
ACM TIST, 2013

Integrative Analysis Using Module-Guided Random Forests Reveals Correlated Genetic Factors Related to Mouse Weight.
PLoS Computational Biology, 2013

Discovering link communities in complex networks by exploiting link dynamics
CoRR, 2013

Flexible and Approximate Computation through State-Space Reduction
CoRR, 2013

Identification of hybrid node and link communities in complex networks.
CoRR, 2013

Domain Adaptation with Topical Correspondence Learning.
Proceedings of the IJCAI 2013, 2013

2012
SAS+ Planning as Satisfiability.
J. Artif. Intell. Res., 2012

Structural features based genome-wide characterization and prediction of nucleosome organization.
BMC Bioinformatics, 2012

2011
Phase Transitions and Backbones of the Asymmetric Traveling Salesman Problem
CoRR, 2011

2010
Animal microRNA Target Prediction Using Diverse Sequence-Specific determinants.
J. Bioinformatics and Computational Biology, 2010

An Effective Algorithm for and Phase Transitions of the Directed Hamiltonian Cycle Problem.
J. Artif. Intell. Res., 2010

A general co-expression network-based approach to gene expression analysis: comparison and applications.
BMC Systems Biology, 2010

Analysis of Alzheimer's disease severity across brain regions by topological analysis of gene co-expression networks.
BMC Systems Biology, 2010

A SAT Based Effective Algorithm for the Directed Hamiltonian Cycle Problem.
Proceedings of the Computer Science, 2010

Promoter prediction based on a multiple instance learning scheme.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

SplittingHeirs: inferring haplotypes by optimizing resultant dense graphs.
Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, 2010

A Novel Transition Based Encoding Scheme for Planning as Satisfiability.
Proceedings of the Twenty-Fourth AAAI Conference on Artificial Intelligence, 2010

Gene Reachability Using Page Ranking on Gene Co-expression Networks.
Proceedings of the Link Mining: Models, Algorithms, and Applications, 2010

2009
How frugal is mother nature with haplotypes?
Bioinformatics, 2009

Long-distance mutual exclusion for planning.
Artif. Intell., 2009

Complete Parsimony Haplotype Inference Problem and Algorithms.
Proceedings of the Algorithms, 2009

An Optimal Temporally Expressive Planner: Initial Results and Application to P2P Network Optimization.
Proceedings of the 19th International Conference on Automated Planning and Scheduling, 2009

2008
MicroRNA prediction with a novel ranking algorithm based on random walks.
Proceedings of the Proceedings 16th International Conference on Intelligent Systems for Molecular Biology (ISMB), 2008

Fast Planning by Search in Domain Transition Graph.
Proceedings of the Twenty-Third AAAI Conference on Artificial Intelligence, 2008

2007
Characterization and Identification of MicroRNA Core Promoters in Four Model Species.
PLoS Computational Biology, 2007

PlantQTL-GE: a database system for identifying candidate genes in rice and Arabidopsis by gene expression and QTL information.
Nucleic Acids Research, 2007

Long-Distance Mutual Exclusion for Propositional Planning.
Proceedings of the IJCAI 2007, 2007

An Efficient Spectral Algorithm for Network Community Discovery and Its Applications to Biological and Social Networks.
Proceedings of the 7th IEEE International Conference on Data Mining (ICDM 2007), 2007

Gene expression profiling and machine learning to understand and predict primary graft dysfunction.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
Rearrangement Clustering: Pitfalls, Remedies, and Applications.
J. Mach. Learn. Res., 2006

A bi-dimensional regression tree approach to the modeling of gene expression regulation.
Bioinformatics, 2006

Cut-and-solve: An iterative search strategy for combinatorial optimization problems.
Artif. Intell., 2006

Identification and Evaluation of Functional Modules in Gene Co-expression Networks.
Proceedings of the Systems Biology and Computational Proteomics, 2006

Data Mining Methods for Modeling Gene Expression Regulation and Their Applications.
Proceedings of the 6th IEEE International Conference on Data Mining (ICDM 2006), 2006

An Efficient Hybrid Strategy for Temporal Planning.
Proceedings of the Integration of AI and OR Techniques in Constraint Programming for Combinatorial Optimization Problems, 2006

Optimal STRIPS Planning by Maximum Satisfiability and Accumulative Learning.
Proceedings of the Sixteenth International Conference on Automated Planning and Scheduling, 2006

Identification and Evaluation of Weak Community Structures in Networks.
Proceedings of the Proceedings, 2006

2005
WordSpy: identifying transcription factor binding motifs by building a dictionary and learning a grammar.
Nucleic Acids Research, 2005

Frontier search.
J. ACM, 2005

CAGER: classification analysis of gene expression regulation using multiple information sources.
BMC Bioinformatics, 2005

Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana.
Bioinformatics, 2005

Distributed stochastic search and distributed breakout: properties, comparison and applications to constraint optimization problems in sensor networks.
Artif. Intell., 2005

MaxSolver: An efficient exact algorithm for (weighted) maximum satisfiability.
Artif. Intell., 2005

Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans , H. sapiens and A. thaliana.
Proceedings of the Systems Biology and Regulatory Genomics, 2005

Build a Dictionary, Learn a Grammar, Decipher Stegoscripts, and Discover Genomic Regulatory Elements.
Proceedings of the Systems Biology and Regulatory Genomics, 2005

A Novel Local Search Algorithm for the Traveling Salesman Problem that Exploits Backbones.
Proceedings of the IJCAI-05, Proceedings of the Nineteenth International Joint Conference on Artificial Intelligence, Edinburgh, Scotland, UK, July 30, 2005

2004
ILM: a web server for predicting RNA secondary structures with pseudoknots.
Nucleic Acids Research, 2004

Phase Transitions and Backbones of the Asymmetric Traveling Salesman Problem.
J. Artif. Intell. Res., 2004

An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
Bioinformatics, 2004

Configuration landscape analysis and backbone guided local search: Part I: Satisfiability and maximum satisfiability.
Artif. Intell., 2004

Average-case analysis of best-first search in two representative directed acyclic graphs.
Artif. Intell., 2004

Design of a High-Throughput Assay for Alternative Splicing Using Polymerase Colonies.
Proceedings of the Biocomputing 2004, 2004

Take a walk and cluster genes: a TSP-based approach to optimal rearrangement clustering.
Proceedings of the Machine Learning, 2004

Efficient Strategies for (Weighted) Maximum Satisfiability.
Proceedings of the Principles and Practice of Constraint Programming, 2004

An Improved Integer Local Search for Complex Scheduling Problems.
Proceedings of the Fourteenth International Conference on Automated Planning and Scheduling (ICAPS 2004), 2004

A Linear Search Strategy using Bounds.
Proceedings of the Fourteenth International Conference on Automated Planning and Scheduling (ICAPS 2004), 2004

2003
Selecting Degenerate Multiplex PCR Primers.
Proceedings of the Algorithms in Bioinformatics, Third International Workshop, 2003

Backbone Guided Local Search for Maximum Satisfiability.
Proceedings of the IJCAI-03, 2003

Phase Transitions of the Asymmetric Traveling Salesman.
Proceedings of the IJCAI-03, 2003

Phase Transitions, Backbones and Heuristic Search.
Proceedings of the 15th IEEE International Conference on Tools with Artificial Intelligence (ICTAI 2003), 2003

An Iterative Loop Matching Approach to the Prediction of RNA Secondary Stru.
Proceedings of the 2nd IEEE Computer Society Bioinformatics Conference, 2003

An analysis and application of distributed constraint satisfaction and optimization algorithms in sensor networks.
Proceedings of the Second International Joint Conference on Autonomous Agents & Multiagent Systems, 2003

Distributed breakout algorithm for distributed constraint optimization problems -- DBArelax.
Proceedings of the Second International Joint Conference on Autonomous Agents & Multiagent Systems, 2003

2002
Distributed problem solving in sensor networks.
Proceedings of the First International Joint Conference on Autonomous Agents & Multiagent Systems, 2002

Distributed Breakout Revisited.
Proceedings of the Eighteenth National Conference on Artificial Intelligence and Fourteenth Conference on Innovative Applications of Artificial Intelligence, July 28, 2002

An Average-Case Analysis of Graph Search.
Proceedings of the Eighteenth National Conference on Artificial Intelligence and Fourteenth Conference on Innovative Applications of Artificial Intelligence, July 28, 2002

Searching for Backbones and Fat: A Limit-Crossing Approach with Applications.
Proceedings of the Eighteenth National Conference on Artificial Intelligence and Fourteenth Conference on Innovative Applications of Artificial Intelligence, July 28, 2002

2001
Heuristic search in artificial intelligence.
Artif. Intell., 2001

Iterative state-space reduction for flexible computation.
Artif. Intell., 2001

Phase Transitions and Backbones of 3-SAT and Maximum 3-SAT.
Proceedings of the Principles and Practice of Constraint Programming, 2001

The Asymmetric Traveling Salesman Problem: Algorithms, Instance Generators, and Tests.
Proceedings of the Algorithm Engineering and Experimentation, Third International Workshop, 2001

2000
Reports on the AAAI Spring Symposia (March 1999).
AI Magazine, 2000

Towards Flexible Teamwork in Persistent Teams: Extended Report.
Autonomous Agents and Multi-Agent Systems, 2000

Towards Large-Scale Conflict Resolution: Initial Results.
Proceedings of the 4th International Conference on Multi-Agent Systems, 2000

Association-Based Multiple Imputation in Multivariate Datasets: A Summary.
Proceedings of the 16th International Conference on Data Engineering, San Diego, California, USA, February 28, 2000

A template-based and pattern-driven approach to situation awareness and assessment in virtual humans.
Proceedings of the Fourth International Conference on Autonomous Agents, 2000

Depth-First Branch-and-Bound versus Local Search: A Case Study.
Proceedings of the Seventeenth National Conference on Artificial Intelligence and Twelfth Conference on on Innovative Applications of Artificial Intelligence, July 30, 2000

Divide-and-Conquer Frontier Search Applied to Optimal Sequence Alignment.
Proceedings of the Seventeenth National Conference on Artificial Intelligence and Twelfth Conference on on Innovative Applications of Artificial Intelligence, July 30, 2000

1999
Model construction with key identification.
Proceedings of the Data Mining and Knowledge Discovery: Theory, 1999

State-space search - algorithms, complexity, extensions, and applications.
Springer, ISBN: 978-0-387-98832-0, 1999

1998
Towards Flexible Teamwork in Persistent Teams.
Proceedings of the Third International Conference on Multiagent Systems, 1998

Complete Anytime Beam Search.
Proceedings of the Fifteenth National Conference on Artificial Intelligence and Tenth Innovative Applications of Artificial Intelligence Conference, 1998

Warfighter's Information Packager.
Proceedings of the Fifteenth National Conference on Artificial Intelligence and Tenth Innovative Applications of Artificial Intelligence Conference, 1998

1997
A note on the complexity of the asymmetric traveling salesman problem.
Oper. Res. Lett., 1997

1996
A Study of Complexity Transitions on the Asymmetric Traveling Salesman Problem.
Artif. Intell., 1996

Epsilon-Transformation: Exploiting Phase Transitions to Solve Combinatorial Optimization Problems.
Artif. Intell., 1996

Forward Estimation for Game-Tree Search.
Proceedings of the Thirteenth National Conference on Artificial Intelligence and Eighth Innovative Applications of Artificial Intelligence Conference, 1996

1995
Performance of Linear-Space Search Algorithms.
Artif. Intell., 1995

1994
Parallel Heap Operations on an EREW PRAM.
J. Parallel Distrib. Comput., 1994

Epsilon-Transformation: Exploiting Phase Transitions to Solve Combinatorial Optimization Problems Initial Results.
Proceedings of the 12th National Conference on Artificial Intelligence, Seattle, WA, USA, July 31, 1994

1993
Depth-First vs. Best-First Search: New Results.
Proceedings of the 11th National Conference on Artificial Intelligence. Washington, 1993

1992
Parallel Heap Operations on EREW PRAM: Summary of Results.
Proceedings of the 6th International Parallel Processing Symposium, 1992

An Average-Case Analysis of Branch-and-Bound with Applications: Summary of Results.
Proceedings of the 10th National Conference on Artificial Intelligence, 1992

1991
Building Heaps in Parallel.
Inf. Process. Lett., 1991

Heuristic tree search with nonparametric statistical inference methods.
Int. J. Comput. Math., 1991

Optimal Parallel Quicksort on Erew Pram.
BIT, 1991

1989
NSA algorithm and its computational complexity-preliminary results.
Proceedings of the IEEE International Workshop on Tools for Artificial Intelligence: Architectures, 1989

A Software System for Robot Programming.
Proceedings of the Intelligent Autonomous Systems 2, 1989


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