Yatish Turakhia

According to our database, Yatish Turakhia authored at least 23 papers between 2013 and 2025.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2025

Toward a Generalized Accelerator for Genome Sequence Analysis.

Yatish Turakhia

Commun. ACM, May, 2025

2024

DP-HLS: A High-Level Synthesis Framework for Accelerating Dynamic Programming Algorithms in Bioinformatics.

Yingqi Cao, Anshu Gupta, Jason Liang, Yatish Turakhia

CoRR, 2024

The Genomic Computing Revolution: Defining the Next Decades of Accelerating Genomics.

Harisankar Sadasivan, Artur Klauser, Jürgen Hench, Yatish Turakhia, Gagandeep Singh, Alberto Zeni, Sarah J. Beecroft, Satish Narayanasamy, Jeff Nivala, Bob Robey, Onur Mutlu, Kristof Denolf, Sriranjani Sitaraman

Proceedings of the IEEE High Performance Extreme Computing Conference, 2024

TALCO: Tiling Genome Sequence Alignment Using Convergence of Traceback Pointers.

Sumit Walia, Cheng Ye, Arkid Bera, Dhruvi Lodhavia, Yatish Turakhia

Proceedings of the IEEE International Symposium on High-Performance Computer Architecture, 2024

2023

DecentTree: scalable Neighbour-Joining for the genomic era.

Weiwen Wang, James Barbetti, Thomas Wong, Bryan Thornlow, Russell Corbett-Detig, Yatish Turakhia, Robert Lanfear, Bui Quang Minh

Bioinform., September, 2023

Tracking and curating putative SARS-CoV-2 recombinants with RIVET.

Kyle Smith, Cheng Ye, Yatish Turakhia

Bioinform., September, 2023

2022

phastSim: Efficient simulation of sequence evolution for pandemic-scale datasets.

Nicola De Maio, William R. Boulton, Lukas Weilguny, Conor R. Walker, Yatish Turakhia, Russell Corbett-Detig, Nick Goldman

PLoS Comput. Biol., 2022

BTE: a Python module for pandemic-scale mutation-annotated phylogenetic trees.

Jakob McBroome, Yatish Turakhia, Russell Corbett-Detig

J. Open Source Softw., 2022

matOptimize: a parallel tree optimization method enables online phylogenetics for SARS-CoV-2.

Cheng Ye, Bryan Thornlow, Angie S. Hinrichs, Alexander Kramer, Cade Mirchandani, Devika Torvi, Robert Lanfear, Russell Corbett-Detig, Yatish Turakhia

Bioinform., 2022

HiCOMB 2022 Invited Speaker: Pandemic-scale Phylogenetics.

Yatish Turakhia

Proceedings of the IEEE International Parallel and Distributed Processing Symposium, 2022

2021

ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees.

Alexander Kramer, Yatish Turakhia, Russell Corbett-Detig

J. Open Source Softw., 2021

2020

Domain-specific hardware accelerators.

William J. Dally, Yatish Turakhia, Song Han

Commun. ACM, 2020

SegAlign: a scalable GPU-based whole genome aligner.

Sneha D. Goenka, Yatish Turakhia, Benedict Paten, Mark Horowitz

Proceedings of the International Conference for High Performance Computing, 2020

2019

Darwin: A Genomics Coprocessor.

Yatish Turakhia, Gill Bejerano, William J. Dally

IEEE Micro, 2019

Parallel Approach to Sliding Window Sums.

Roman Snytsar, Yatish Turakhia

Proceedings of the Algorithms and Architectures for Parallel Processing, 2019

Darwin-WGA: A Co-processor Provides Increased Sensitivity in Whole Genome Alignments with High Speedup.

Yatish Turakhia, Sneha D. Goenka, Gill Bejerano, William J. Dally

Proceedings of the 25th IEEE International Symposium on High Performance Computer Architecture, 2019

2018

Darwin: A Genomics Co-processor Provides up to 15, 000X Acceleration on Long Read Assembly.

Yatish Turakhia, Gill Bejerano, William J. Dally

Proceedings of the Twenty-Third International Conference on Architectural Support for Programming Languages and Operating Systems, 2018

2017

Thread Progress Equalization: Dynamically Adaptive Power-Constrained Performance Optimization of Multi-Threaded Applications.

Yatish Turakhia, Guangshuo Liu, Siddharth Garg, Diana Marculescu

IEEE Trans. Computers, 2017

HoLiSwap: Reducing Wire Energy in L1 Caches.

Yatish Turakhia, Subhasis Das, Tor M. Aamodt, William J. Dally

CoRR, 2017

2016

Thread Progress Equalization: Dynamically Adaptive Power and Performance Optimization of Multi-threaded Applications.

Yatish Turakhia, Guangshuo Liu, Siddharth Garg, Diana Marculescu

CoRR, 2016

2015

Framework for Application Mapping over Packet-Switched Network of FPGAs: Case Studies.

Vinay B. Y. Kumar, Pinalkumar Engineer, Mandar Datar, Yatish Turakhia, Saurabh Agarwal, Sanket Diwale, Sachin B. Patkar

CoRR, 2015

2013

Cherry-picking: exploiting process variations in dark-silicon homogeneous chip multi-processors.

Bharathwaj Raghunathan, Yatish Turakhia, Siddharth Garg, Diana Marculescu

Proceedings of the Design, Automation and Test in Europe, 2013

HaDeS: architectural synthesis for <u>h</u>eterogeneous <u>d</u>ark <u>s</u>ilicon chip multi-processors.

Yatish Turakhia, Bharathwaj Raghunathan, Siddharth Garg, Diana Marculescu

Proceedings of the 50th Annual Design Automation Conference 2013, 2013