Stuart L. Moodie

According to our database, Stuart L. Moodie authored at least 13 papers between 2006 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1.

Lucian P. Smith, Stuart L. Moodie, Frank T. Bergmann, Colin S. Gillespie, Sarah M. Keating, Matthias König, Chris J. Myers, Maciek J. Swat, Darren J. Wilkinson, Michael Hucka

J. Integr. Bioinform., 2020

2019

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.

Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna

J. Integr. Bioinform., 2019

2015

Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2.

Anatoly A. Sorokin, Nicolas Le Novère, Augustin Luna, Tobias Czauderna, Emek Demir, Robin Haw, Huaiyu Mi, Stuart L. Moodie, Falk Schreiber, Alice Villéger

J. Integr. Bioinform., 2015

Systems Biology Graphical Notation: Process Description language Level 1 Version 1.3.

Stuart L. Moodie, Nicolas Le Novère, Emek Demir, Huaiyu Mi, Alice Villéger

J. Integr. Bioinform., 2015

Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 .

Huaiyu Mi, Falk Schreiber, Stuart L. Moodie, Tobias Czauderna, Emek Demir, Robin Haw, Augustin Luna, Nicolas Le Novère, Anatoly A. Sorokin, Alice Villéger

J. Integr. Bioinform., 2015

Implementing a Domain-specific Language for Model-based Drug Development.

Natallia Kokash, Stuart L. Moodie, Mike K. Smith, Nick Holford

Proceedings of the 6th International Conference on Emerging Ubiquitous Systems and Pervasive Networks (EUSPN 2015)/ The 5th International Conference on Current and Future Trends of Information and Communication Technologies in Healthcare (ICTH-2015)/ Affiliated Workshops, 2015

2014

COMBINE archive: One File To Share Them All.

Frank T. Bergmann, Richard Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère

CoRR, 2014

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.

Frank T. Bergmann, Richard R. Adams, Stuart L. Moodie, Jonathan Cooper, Mihai Glont, Martin Golebiewski, Michael Hucka, Camille Laibe, Andrew K. Miller, David P. Nickerson, Brett G. Olivier, Nicolas Rodriguez, Herbert M. Sauro, Martin Scharm, Stian Soiland-Reyes, Dagmar Waltemath, Florent Yvon, Nicolas Le Novère

BMC Bioinform., 2014

2012

Software support for SBGN maps: SBGN-ML and LibSBGN.

Martijn P. van Iersel, Alice Villéger, Tobias Czauderna, Sarah E. Boyd, Frank T. Bergmann, Augustin Luna, Emek Demir, Anatoly A. Sorokin, Ugur Dogrusöz, Yukiko Matsuoka, Akira Funahashi, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber

Bioinform., 2012

2011

Translation from the Quantified Implicit Process Flow Abstraction in SBGN-PD Diagrams to Bio-PEPA Illustrated on the Cholesterol Pathway.

Laurence Loewe, Maria Luisa Guerriero, Steven Watterson, Stuart L. Moodie, Peter Ghazal, Jane Hillston

Trans. Comp. Sys. Biology, 2011

2009

Quantifying the implicit process flow abstraction in SBGN-PD diagrams with Bio-PEPA

Laurence Loewe, Stuart L. Moodie, Jane Hillston

Proceedings of the Proceedings Second International Workshop on Computational Models for Cell Processes, 2009

2006

A Graphical Notation to describe the Logical Interactions of Biological Pathways.

Stuart L. Moodie, Anatoly A. Sorokin, Igor Goryanin, Peter Ghazal

J. Integr. Bioinform., 2006

PDQ Wizard: automated prioritization and characterization of gene and protein lists using biomedical literature.

G. R. Grimes, T. Q. Wen, Muriel Mewissen, Robert M. Baxter, Stuart L. Moodie, J. S. Beattie, Peter Ghazal

Bioinform., 2006