Timothy A. Miller

According to our database, Timothy A. Miller authored at least 86 papers between 2005 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Improving model transferability for clinical note section classification models using continued pretraining.

Weipeng Zhou, Meliha Yetisgen, Majid Afshar, Yanjun Gao, Guergana Savova, Timothy A. Miller

J. Am. Medical Informatics Assoc., December, 2023

Representing and utilizing clinical textual data for real world studies: An OHDSI approach.

Vipina Kuttichi Keloth, Juan M. Banda, Michael J. Gurley, Paul M. Heider, Georgina Kennedy, Hongfang Liu, Feifan Liu, Timothy A. Miller, Karthik Natarajan, Olga V. Patterson, Yifan Peng, Kalpana Raja, Ruth M. Reeves, Masoud Rouhizadeh, Jianlin Shi, Xiaoyan Wang, Yanshan Wang, Wei-Qi Wei, Andrew E. Williams, Rui Zhang, Rimma Belenkaya, Christian G. Reich, Clair Blacketer, Patrick B. Ryan, George Hripcsak, Noémie Elhadad, Hua Xu

J. Biomed. Informatics, June, 2023

DR.BENCH: Diagnostic Reasoning Benchmark for Clinical Natural Language Processing.

Yanjun Gao, Dmitriy Dligach, Timothy A. Miller, John R. Caskey, Brihat Sharma, Matthew M. Churpek, Majid Afshar

J. Biomed. Informatics, February, 2023

Automatic Extraction of Medication Mentions from Tweets - Overview of the BioCreative VII Shared Task 3 Competition.

Davy Weissenbacher, Karen O'Connor, Siddharth Rawal, Yu Zhang, Richard Tzong-Han Tsai, Timothy A. Miller, Dongfang Xu, Carol Anderson, Bo Liu, Qing Han, Jinfeng Zhang, Igor Kulev, Berkay Köprü, Raul Rodriguez-Esteban, Elif Ozkirimli, Ammer Ayach, Roland Roller, Stephen R. Piccolo, Peijin Han, V. G. Vinod Vydiswaran, Ramya Tekumalla, Juan M. Banda, Parsa Bagherzadeh, Sabine Bergler, João Figueira Silva, Tiago Almeida, Paloma Martínez, Renzo M. Rivera Zavala, Chen-Kai Wang, Hong-Jie Dai, Luis Alberto Robles Hernandez, Graciela Gonzalez-Hernandez

Database J. Biol. Databases Curation, February, 2023

The impact of using an AI chatbot to respond to patient messages.

Shan Chen, Marco Guevara, Shalini Moningi, Frank Hoebers, Hesham Elhalawani, Benjamin H. Kann, Fallon E. Chipidza, Jonathan Leeman, Hugo J. W. L. Aerts, Timothy A. Miller, Guergana K. Savova, Raymond H. Mak, Maryam Lustberg, Majid Afshar, Danielle S. Bitterman

CoRR, 2023

Considerations for health care institutions training large language models on electronic health records.

Weipeng Zhou, Danielle S. Bitterman, Majid Afshar, Timothy A. Miller

CoRR, 2023

Leveraging A Medical Knowledge Graph into Large Language Models for Diagnosis Prediction.

Yanjun Gao, Ruizhe Li, John R. Caskey, Dmitriy Dligach, Timothy A. Miller, Matthew M. Churpek, Majid Afshar

CoRR, 2023

Natural language processing to automatically extract the presence and severity of esophagitis in notes of patients undergoing radiotherapy.

Shan Chen, Marco Guevara, Nicolas Ramirez, Arpi Murray, Jeremy L. Warner, Hugo J. W. L. Aerts, Timothy A. Miller, Guergana K. Savova, Raymond H. Mak, Danielle S. Bitterman

CoRR, 2023

Progress Note Understanding - Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 Shared Task.

Yanjun Gao, Dmitriy Dligach, Timothy A. Miller, Matthew M. Churpek, Özlem Uzuner, Majid Afshar

CoRR, 2023

End-to-end clinical temporal information extraction with multi-head attention.

Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Guergana Savova

Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

Two-Stage Fine-Tuning for Improved Bias and Variance for Large Pretrained Language Models.

Lijing Wang, Yingya Li, Timothy A. Miller, Steven Bethard, Guergana Savova

Proceedings of the 61st Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2023

Multi-Task Training with In-Domain Language Models for Diagnostic Reasoning.

Brihat Sharma, Yanjun Gao, Timothy A. Miller, Matthew M. Churpek, Majid Afshar, Dmitriy Dligach

Proceedings of the 5th Clinical Natural Language Processing Workshop, 2023

2022

Confederated learning in healthcare: Training machine learning models using disconnected data separated by individual, data type and identity for Large-Scale health system Intelligence.

Dianbo Liu, Kathe P. Fox, Griffin M. Weber, Timothy A. Miller

J. Biomed. Informatics, 2022

A scoping review of publicly available language tasks in clinical natural language processing.

Yanjun Gao, Dmitriy Dligach, Leslie Christensen, Samuel Tesch, Ryan Laffin, Dongfang Xu, Timothy A. Miller, Özlem Uzuner, Matthew M. Churpek, Majid Afshar

J. Am. Medical Informatics Assoc., 2022

Classifying unstructured electronic consult messages to understand primary care physician specialty information needs.

Xiyu Ding, Michael L. Barnett, Ateev Mehrotra, Delphine S. Tuot, Danielle S. Bitterman, Timothy A. Miller

J. Am. Medical Informatics Assoc., 2022

Summarizing Patients Problems from Hospital Progress Notes Using Pre-trained Sequence-to-Sequence Models.

Yanjun Gao, Dmitriy Dligach, Timothy A. Miller, Dongfang Xu, Matthew M. Churpek, Majid Afshar

CoRR, 2022

Hierarchical Annotation for Building A Suite of Clinical Natural Language Processing Tasks: Progress Note Understanding.

Yanjun Gao, Dmitriy Dligach, Timothy A. Miller, Samuel Tesch, Ryan Laffin, Matthew M. Churpek, Majid Afshar

Proceedings of the Thirteenth Language Resources and Evaluation Conference, 2022

2021

Deep representation learning of patient data from Electronic Health Records (EHR): A systematic review.

Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts

J. Biomed. Informatics, 2021

Pre-training phenotyping classifiers.

Dmitriy Dligach, Majid Afshar, Timothy A. Miller

J. Biomed. Informatics, 2021

Depth-Bounded Statistical PCFG Induction as a Model of Human Grammar Acquisition.

Lifeng Jin, Lane Schwartz, Finale Doshi-Velez, Timothy A. Miller, William Schuler

Comput. Linguistics, 2021

SemEval-2021 Task 10: Source-Free Domain Adaptation for Semantic Processing.

Egoitz Laparra, Xin Su, Yiyun Zhao, Özlem Uzuner, Timothy A. Miller, Steven Bethard

Proceedings of the 15th International Workshop on Semantic Evaluation, 2021

EntityBERT: Entity-centric Masking Strategy for Model Pretraining for the Clinical Domain.

Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova

Proceedings of the 20th Workshop on Biomedical Language Processing, 2021

The SMART Cumulus Text-to-FHIR NLP Pipeline.

Timothy A. Miller, Bin Mao, Dan Gottlieb, Kenneth D. Mandl

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Does BERT need domain adaptation for clinical negation detection?

Chen Lin, Steven Bethard, Dmitriy Dligach, Farig Sadeque, Guergana Savova, Timothy A. Miller

J. Am. Medical Informatics Assoc., 2020

Deep Representation Learning of Patient Data from Electronic Health Records (EHR): A Systematic Review.

Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts

CoRR, 2020

Federated pretraining and fine tuning of BERT using clinical notes from multiple silos.

Dianbo Liu, Timothy A. Miller

CoRR, 2020

A BERT-based One-Pass Multi-Task Model for Clinical Temporal Relation Extraction.

Chen Lin, Timothy A. Miller, Dmitriy Dligach, Farig Sadeque, Steven Bethard, Guergana Savova

Proceedings of the 19th SIGBioMed Workshop on Biomedical Language Processing, 2020

Learning Hierarchical Transformer-based Representations of Clinical Notes.

Xin Su, Timothy A. Miller, Majid Afshar, Dmitriy Dligach

Proceedings of the AMIA 2020, 2020

Deep Representation Learning of Patient Data from Electronic Health Records: A Systematic Review.

Yuqi Si, Jingcheng Du, Zhao Li, Xiaoqian Jiang, Timothy A. Miller, Fei Wang, W. Jim Zheng, Kirk Roberts

Proceedings of the AMIA 2020, 2020

Learning Patient Representations from Electronic Health Records across Diverse Data Types.

Timothy A. Miller, Dmitriy Dligach, Fei Wang, Yuqi Si, Funda Meric-Bernstam

Proceedings of the AMIA 2020, 2020

Understanding eConsult Triage Behavior with Natural Language Processing.

Xiyu Ding, Michael L. Barnett, Ateev Mehrotra, Timothy A. Miller

Proceedings of the AMIA 2020, 2020

Defining and Learning Refined Temporal Relations in the Clinical Narrative.

Kristin Wright-Bettner, Chen Lin, Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Martha Palmer, James H. Martin, Guergana Savova

Proceedings of the 11th International Workshop on Health Text Mining and Information Analysis, 2020

Extracting Relations between Radiotherapy Treatment Details.

Danielle S. Bitterman, Timothy A. Miller, David Harris, Chen Lin, Sean Finan, Jeremy L. Warner, Raymond H. Mak, Guergana Savova

Proceedings of the 3rd Clinical Natural Language Processing Workshop, 2020

2019

Supervised methods to extract clinical events from cardiology reports in Italian.

Natalia Viani, Timothy A. Miller, Carlo Napolitano, Silvia G. Priori, Guergana K. Savova, Riccardo Bellazzi, Lucia Sacchi

J. Biomed. Informatics, 2019

Toward a clinical text encoder: pretraining for clinical natural language processing with applications to substance misuse.

Dmitriy Dligach, Majid Afshar, Timothy A. Miller

J. Am. Medical Informatics Assoc., 2019

Confederated Machine Learning on Horizontally and Vertically Separated Medical Data for Large-Scale Health System Intelligence.

Dianbo Liu, Timothy A. Miller, Kenneth D. Mandl

CoRR, 2019

Simplified Neural Unsupervised Domain Adaptation.

Timothy A. Miller

Proceedings of the 2019 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2019

Two-stage Federated Phenotyping and Patient Representation Learning.

Dianbo Liu, Dmitriy Dligach, Timothy A. Miller

Proceedings of the 18th BioNLP Workshop and Shared Task, 2019

Towards a Universal Document-Level Clinical Text Encoder: Methods for Neural Network Pre-training with Applications to Substance Misuse.

Dmitriy Dligach, Majid Afshar, Timothy A. Miller

Proceedings of the AMIA 2019, 2019

Unsupervised Learning of PCFGs with Normalizing Flow.

Lifeng Jin, Finale Doshi-Velez, Timothy A. Miller, Lane Schwartz, William Schuler

Proceedings of the 57th Conference of the Association for Computational Linguistics, 2019

Cross-document coreference: An approach to capturing coreference without context.

Kristin Wright-Bettner, Martha Palmer, Guergana Savova, Piet C. de Groen, Timothy A. Miller

Proceedings of the Tenth International Workshop on Health Text Mining and Information Analysis LOUHI@EMNLP 2019, 2019

2018

Unsupervised Grammar Induction with Depth-bounded PCFG.

Lifeng Jin, Finale Doshi-Velez, Timothy A. Miller, William Schuler, Lane Schwartz

Trans. Assoc. Comput. Linguistics, 2018

FADL: Federated-Autonomous Deep Learning for Distributed Electronic Health Record.

Dianbo Liu, Timothy A. Miller, Raheel Sayeed, Kenneth D. Mandl

CoRR, 2018

Learning Patient Representations from Text.

Dmitriy Dligach, Timothy A. Miller

Proceedings of the Seventh Joint Conference on Lexical and Computational Semantics, 2018

Spotting Spurious Data with Neural Networks.

Hadi Amiri, Timothy A. Miller, Guergana Savova

Proceedings of the 2018 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2018

Depth-bounding is effective: Improvements and Evaluation of Unsupervised PCFG Induction.

Lifeng Jin, Finale Doshi-Velez, Timothy A. Miller, William Schuler, Lane Schwartz

Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, Brussels, Belgium, October 31, 2018

Self-training improves Recurrent Neural Networks performance for Temporal Relation Extraction.

Chen Lin, Timothy A. Miller, Dmitriy Dligach, Hadi Amiri, Steven Bethard, Guergana Savova

Proceedings of the Ninth International Workshop on Health Text Mining and Information Analysis, 2018

2017

Towards generalizable entity-centric clinical coreference resolution.

Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Chen Lin, Guergana Savova

J. Biomed. Informatics, 2017

Repeat before Forgetting: Spaced Repetition for Efficient and Effective Training of Neural Networks.

Hadi Amiri, Timothy A. Miller, Guergana Savova

Proceedings of the 2017 Conference on Empirical Methods in Natural Language Processing, 2017

Neural Temporal Relation Extraction.

Dmitriy Dligach, Timothy A. Miller, Chen Lin, Steven Bethard, Guergana Savova

Proceedings of the 15th Conference of the European Chapter of the Association for Computational Linguistics, 2017

Unsupervised Domain Adaptation for Clinical Negation Detection.

Timothy A. Miller, Steven Bethard, Hadi Amiri, Guergana Savova

Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

Representations of Time Expressions for Temporal Relation Extraction with Convolutional Neural Networks.

Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova

Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

DeepPhe - A Natural Language Processing System for Extracting Cancer Phenotypes from Clinical Records.

Guergana Savova, Eugene Tseytlin, Sean Finan, Melissa Castine, Timothy A. Miller, Olga Medvedeva, David Harris, Harry Hochheiser, Chen Lin, Girish Chavan, Rebecca Jacobson

Proceedings of the AMIA 2017, 2017

Recurrent Neural Network Architectures for Event Extraction from Italian Medical Reports.

Natalia Viani, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Carlo Napolitano, Silvia G. Priori, Riccardo Bellazzi, Lucia Sacchi, Guergana K. Savova

Proceedings of the Artificial Intelligence in Medicine, 2017

2016

Multilayered temporal modeling for the clinical domain.

Chen Lin, Dmitriy Dligach, Timothy A. Miller, Steven Bethard, Guergana K. Savova

J. Am. Medical Informatics Assoc., 2016

Memory-Bounded Left-Corner Unsupervised Grammar Induction on Child-Directed Input.

Cory Shain, William Bryce, Lifeng Jin, Victoria Krakovna, Finale Doshi-Velez, Timothy A. Miller, William Schuler, Lane Schwartz

Proceedings of the COLING 2016, 2016

Unsupervised Document Classification with Informed Topic Models.

Timothy A. Miller, Dmitriy Dligach, Guergana Savova

Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016

Improving Temporal Relation Extraction with Training Instance Augmentation.

Chen Lin, Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Guergana Savova

Proceedings of the 15th Workshop on Biomedical Natural Language Processing, 2016

Feature Portability in Cross-domain Clinical Coreference.

Timothy A. Miller, Dmitriy Dligach, Chen Lin, Steven Bethard, Guergana Savova

Proceedings of the AMIA 2016, 2016

2015

Automatic identification of methotrexate-induced liver toxicity in patients with rheumatoid arthritis from the electronic medical record.

Chen Lin, Elizabeth W. Karlson, Dmitriy Dligach, Monica P. Ramirez, Timothy A. Miller, Huan Mo, Natalie S. Braggs, Andrew Cagan, Vivian S. Gainer, Joshua C. Denny, Guergana K. Savova

J. Am. Medical Informatics Assoc., 2015

Extracting Time Expressions from Clinical Text.

Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Chen Lin, Guergana Savova

Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015

Robust Sentence Segmentation for Clinical Text.

Timothy A. Miller, Sean Finan, Dmitriy Dligach, Guergana Savova

Proceedings of the AMIA 2015, 2015

Semi-supervised Learning for Phenotyping Tasks.

Dmitriy Dligach, Timothy A. Miller, Guergana Savova

Proceedings of the AMIA 2015, 2015

2014

Temporal Annotation in the Clinical Domain.

William F. Styler IV, Steven Bethard, Sean Finan, Martha Palmer, Sameer Pradhan, Piet C. de Groen, Bradley James Erickson, Timothy A. Miller, Chen Lin, Guergana K. Savova, James Pustejovsky

Trans. Assoc. Comput. Linguistics, 2014

Discovering body site and severity modifiers in clinical texts.

Dmitriy Dligach, Steven Bethard, Lee Becker, Timothy A. Miller, Guergana K. Savova

J. Am. Medical Informatics Assoc., 2014

Descending-Path Convolution Kernel for Syntactic Structures.

Chen Lin, Timothy A. Miller, Alvin Kho, Steven Bethard, Dmitriy Dligach, Sameer Pradhan, Guergana Savova

Proceedings of the 52nd Annual Meeting of the Association for Computational Linguistics, 2014

2013

Active Learning for Phenotyping Tasks.

Dmitriy Dligach, Timothy A. Miller, Guergana Savova

Proceedings of the Workshop on NLP for Medicine and Biology associated with RANLP 2013, 2013

Discovering Temporal Narrative Containers in Clinical Text.

Timothy A. Miller, Steven Bethard, Dmitriy Dligach, Sameer Pradhan, Chen Lin, Guergana Savova

Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, 2013

Negation's Not Solved: Reconsidering Negation Annotation and Evaluation.

Stephen T. Wu, Timothy A. Miller, James J. Masanz, Matthew Coarr, David Carrell, Scott R. Halgrim, David Harris, Cheryl Clark

Proceedings of the AMIA 2013, 2013

Discovering Time Expressions in Clinical Text.

Timothy A. Miller, Dmitriy Dligach, Steven Bethard, Sameer Pradhan, Chen Lin, Guergana K. Savova

Proceedings of the AMIA 2013, 2013

Automatic Prediction of Rheumatoid Arthritis Disease Activity from the Electronic Medical Records.

Chen Lin, Elizabeth W. Karlson, Helena Canhão, Timothy A. Miller, Dmitriy Dligach, Pei J. Chen, Raúl N. Pérez, Yuanyuan Shen, Michael E. Weinblatt, Nancy A. Shadick, Robert M. Plenge, Guergana Savova

Proceedings of the AMIA 2013, 2013

Discovering Body Site and Severity Modifiers in Clinical Texts.

Dmitriy Dligach, Timothy A. Miller, Guergana Savova

Proceedings of the AMIA 2013, 2013

2012

A system for coreference resolution for the clinical narrative.

Jiaping Zheng, Wendy Webber Chapman, Timothy A. Miller, Chen Lin, Rebecca S. Crowley, Guergana K. Savova

J. Am. Medical Informatics Assoc., 2012

Active Learning for Coreference Resolution.

Timothy A. Miller, Dmitriy Dligach, Guergana Savova

Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

2011

A Pronoun Anaphora Resolution System based on Factorial Hidden Markov Models.

Dingcheng Li, Timothy A. Miller, William Schuler

Proceedings of the 49th Annual Meeting of the Association for Computational Linguistics: Human Language Technologies, 2011

2010

Broad-Coverage Parsing Using Human-Like Memory Constraints.

William Schuler, Samir AbdelRahman, Timothy A. Miller, Lane Schwartz

Comput. Linguistics, 2010

HHMM Parsing with Limited Parallelism.

Timothy A. Miller, William Schuler

Proceedings of the 2010 Workshop on Cognitive Modeling and Computational Linguistics, 2010

2009

Parsing Speech Repair without Specialized Grammar Symbols.

Timothy A. Miller, Luan Nguyen, William Schuler

Proceedings of the ACL 2009, 2009

2008

Toward a Psycholinguistically-Motivated Model of Language Processing.

William Schuler, Samir AbdelRahman, Timothy A. Miller, Lane Schwartz

Proceedings of the COLING 2008, 2008

A Syntactic Time-Series Model for Parsing Fluent and Disfluent Speech.

Timothy A. Miller, William Schuler

Proceedings of the COLING 2008, 2008

A Unified Syntactic Model for Parsing Fluent and Disfluent Speech.

Timothy A. Miller, William Schuler

Proceedings of the ACL 2008, 2008

2007

Elements of a spoken language programming interface for robots.

Timothy A. Miller, Andrew Exley, William Schuler

Proceedings of the Second ACM SIGCHI/SIGART Conference on Human-Robot Interaction, 2007

2006

Dynamic evidence models in a DBN phone recognizer.

William Schuler, Timothy A. Miller, Stephen T. Wu, Andrew Exley

Proceedings of the INTERSPEECH 2006, 2006

2005

Integrating denotational meaning into a DBN language model.

William Schuler, Timothy A. Miller

Proceedings of the INTERSPEECH 2005, 2005

Exploiting a sensed environment to improve human-agent communication.

Shana Watters, Timothy A. Miller, Praveen Balachandran, William Schuler, Richard M. Voyles

Proceedings of the 4th International Joint Conference on Autonomous Agents and Multiagent Systems (AAMAS 2005), 2005

Using Volunteers to Annotate Biomedical Corpora for Anaphora Resolution.

Shana Watters, Brian McInnes, David McKoskey, Timothy A. Miller, Daniel Boley, Maria L. Gini, William Schuler, A. Polukeyeva, Jeanette K. Gundel, Sergey V. Pakhomov, Guergana Savova

Proceedings of the Knowledge Collection from Volunteer Contributors, 2005