Marco Pagni

Orcid: 0000-0001-9292-9463

According to our database1, Marco Pagni authored at least 33 papers between 2000 and 2021.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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Online presence:

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Bibliography

2021
MetaNetX/MNXref: unified namespace for metabolites and biochemical reactions in the context of metabolic models.
Nucleic Acids Res., 2021

2019
Condition-specific series of metabolic sub-networks and its application for gene set enrichment analysis.
Bioinform., 2019

Inferring gene expression networks with hubs using a degree weighted Lasso approach.
Bioinform., 2019

2017
Updates in Rhea - an expert curated resource of biochemical reactions.
Nucleic Acids Res., 2017

2016
MetaNetX/MNXref - reconciliation of metabolites and biochemical reactions to bring together genome-scale metabolic networks.
Nucleic Acids Res., 2016

2014
Reconciliation of metabolites and biochemical reactions for metabolic networks.
Briefings Bioinform., 2014

2013
pfsearchV3: a code acceleration and heuristic to search PROSITE profiles.
Bioinform., 2013

Density-based hierarchical clustering of pyro-sequences on a large scale - the case of fungal ITS1.
Bioinform., 2013

MetaNetX.org: a website and repository for accessing, analysing and manipulating metabolic networks.
Bioinform., 2013

2011
A Preliminary Study on the Prediction of Human Protein Functions.
Proceedings of the Foundations on Natural and Artificial Computation, 2011

2009
The Microbe browser for comparative genomics.
Nucleic Acids Res., 2009

2008
Experience using web services for biological sequence analysis.
Briefings Bioinform., 2008

A Multi-protocol Bioinformatics Web Service: Use SOAP, Take a REST or Go with HTML.
Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 2008

2007
HitKeeper, a generic software package for hit list management.
Source Code Biol. Medicine, 2007

MyHits: improvements to an interactive resource for analyzing protein sequences.
Nucleic Acids Res., 2007

2006
The PROSITE database.
Nucleic Acids Res., 2006

Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems.
Proceedings of the Second International Conference on e-Science and Grid Technologies (e-Science 2006), 2006

2005
InterPro, progress and status in 2005.
Nucleic Acids Res., 2005

JACOP: A simple and robust method for the automated classification of protein sequences with modular architecture.
BMC Bioinform., 2005

2004
trome, trEST and trGEN: databases of predicted protein sequences.
Nucleic Acids Res., 2004

MyHits: a new interactive resource for protein annotation and domain identification.
Nucleic Acids Res., 2004

2003
The InterPro Database, 2003 brings increased coverage and new features.
Nucleic Acids Res., 2003

Swiss EMBnet node web server.
Nucleic Acids Res., 2003

Automated annotation of microbial proteomes in SWISS-PROT.
Comput. Biol. Chem., 2003

2002
The PROSITE database, its status in 2002.
Nucleic Acids Res., 2002

PROSITE: A Documented Database Using Patterns and Profiles as Motif Descriptors.
Briefings Bioinform., 2002

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites
Briefings Bioinform., 2002

2001
trEST, trGEN and Hits: access to databases of predicted protein sequences.
Nucleic Acids Res., 2001

The InterPro database, an integrated documentation resource for protein families, domains and functional sites.
Nucleic Acids Res., 2001

mmsearch: a motif arrangement language and search program.
Bioinform., 2001

Making Sense of Score Statistics for Sequence Alignments.
Briefings Bioinform., 2001

2000
Dotlet: diagonal plots in a Web browser.
Bioinform., 2000

InterPro-an integrated documentation resource for protein families, domains and functional sites.
Bioinform., 2000


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