Jari Björne

According to our database1, Jari Björne authored at least 24 papers between 2007 and 2018.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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PhD thesis 
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Bibliography

2018
Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction.
Database, 2018

The 2018 Shared Task on Extrinsic Parser Evaluation: On the Downstream Utility of English Universal Dependency Parsers.
Proceedings of the CoNLL 2018 Shared Task: Multilingual Parsing from Raw Text to Universal Dependencies, Brussels, Belgium, October 31, 2018

Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing.
Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018, 2018

2017
End-to-End System for Bacteria Habitat Extraction.
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

2016
UTU at SemEval-2016 Task 10: Binary Classification for Expression Detection (BCED).
Proceedings of the 10th International Workshop on Semantic Evaluation, 2016

Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016.
Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, 2016

2013
UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge.
Proceedings of the 7th International Workshop on Semantic Evaluation, 2013

TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

2012
Semantically linking molecular entities in literature through entity relationships.
BMC Bioinformatics, 2012

University of Turku in the BioNLP'11 Shared Task.
BMC Bioinformatics, 2012

PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations.
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

2011
Extracting Contextualized Complex Biological Events with Rich Graph-Based Feature Sets.
Computational Intelligence, 2011

U-Compare bio-event meta-service: compatible BioNLP event extraction services.
BMC Bioinformatics, 2011

Generalizing Biomedical Event Extraction.
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

2010
Event extraction on PubMed scale.
BMC Bioinformatics, 2010

Complex event extraction at PubMed scale.
Bioinformatics [ISMB], 2010

Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain.
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

Scaling up Biomedical Event Extraction to the Entire PubMed.
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

2009
Learning to Extract Biological Event and Relation Graphs.
Proceedings of the 17th Nordic Conference of Computational Linguistics, 2009

Extracting Complex Biological Events with Rich Graph-Based Feature Sets.
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

2008
Comparative analysis of five protein-protein interaction corpora.
BMC Bioinformatics, 2008

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning.
BMC Bioinformatics, 2008

A Graph Kernel for Protein-Protein Interaction Extraction.
Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008

2007
BioInfer: a corpus for information extraction in the biomedical domain.
BMC Bioinformatics, 2007


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