Jari Björne

According to our database, Jari Björne authored at least 31 papers between 2007 and 2023.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2023

AI-Assisted Learning with ChatGPT and Large Language Models: Implications for Higher Education.

Samuli Laato, Benedikt Morschheuser, Juho Hamari, Jari Björne

Proceedings of the IEEE International Conference on Advanced Learning Technologies, 2023

2022

Neural Network and Random Forest Models in Protein Function Prediction.

Kai Hakala, Suwisa Kaewphan, Jari Björne, Farrokh Mehryary, Hans Moen, Martti Tolvanen, Tapio Salakoski, Filip Ginter

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Striving for platform independence in the e-learning landscape: a study on a flexible exercise creation system.

Samuli Laato, Mika Murtojärvi, Antti Airola, Jari Björne

Proceedings of the International Conference on Advanced Learning Technologies, 2022

2021

BioVerbNet: a large semantic-syntactic classification of verbs in biomedicine.

Olga Majewska, Charlotte Collins, Simon Baker, Jari Björne, Susan Windisch Brown, Anna Korhonen, Martha Palmer

J. Biomed. Semant., 2021

Towards Automated Screening of Literature on Artificial Intelligence in Nursing.

Hans Moen, Dari AlHuwail, Jari Björne, Lori Block, Sven Celin, Eunjoo Jeon, Karl Kreiner, James Mitchell, Gabriela Ozegovic, Charlene Esteban Ronquillo, Lydia Sequeira, Jude L. Tayaben, Maxim Topaz, Sai Pavan Kumar Veeranki, Laura-Maria Peltonen

Proceedings of the MEDINFO 2021: One World, One Health - Global Partnership for Digital Innovation, 2021

2020

Propagating AI Knowledge Across University Disciplines- The Design of A Multidisciplinary AI Study Module.

Samuli Laato, Henna Vilppu, Juho Heimonen, Antti Hakkala, Jari Björne, Ali Farooq, Tapio Salakoski, Antti Airola

Proceedings of the IEEE Frontiers in Education Conference, 2020

2018

Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction.

Farrokh Mehryary, Jari Björne, Tapio Salakoski, Filip Ginter

Database J. Biol. Databases Curation, 2018

The 2018 Shared Task on Extrinsic Parser Evaluation: On the Downstream Utility of English Universal Dependency Parsers.

Murhaf Fares, Stephan Oepen, Lilja Øvrelid, Jari Björne, Richard Johansson

Proceedings of the CoNLL 2018 Shared Task: Multilingual Parsing from Raw Text to Universal Dependencies, Brussels, Belgium, October 31, 2018

Biomedical Event Extraction Using Convolutional Neural Networks and Dependency Parsing.

Jari Björne, Tapio Salakoski

Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018, 2018

2017

End-to-End System for Bacteria Habitat Extraction.

Farrokh Mehryary, Kai Hakala, Suwisa Kaewphan, Jari Björne, Tapio Salakoski, Filip Ginter

Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

2016

UTU at SemEval-2016 Task 10: Binary Classification for Expression Detection (BCED).

Jari Björne, Tapio Salakoski

Proceedings of the 10th International Workshop on Semantic Evaluation, 2016

Deep Learning with Minimal Training Data: TurkuNLP Entry in the BioNLP Shared Task 2016.

Farrokh Mehryary, Jari Björne, Sampo Pyysalo, Tapio Salakoski, Filip Ginter

Proceedings of the 4th BioNLP Shared Task Workshop, BioNLP 2016, 2016

2015

TEES 2.2: Biomedical Event Extraction for Diverse Corpora.

Jari Björne, Tapio Salakoski

BMC Bioinform., December, 2015

2013

UTurku: Drug Named Entity Recognition and Drug-Drug Interaction Extraction Using SVM Classification and Domain Knowledge.

Jari Björne, Suwisa Kaewphan, Tapio Salakoski

Proceedings of the 7th International Workshop on Semantic Evaluation, 2013

TEES 2.1: Automated Annotation Scheme Learning in the BioNLP 2013 Shared Task.

Jari Björne, Tapio Salakoski

Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

2012

Semantically linking molecular entities in literature through entity relationships.

Sofie Van Landeghem, Jari Björne, Thomas Abeel, Bernard De Baets, Tapio Salakoski, Yves Van de Peer

BMC Bioinform., 2012

University of Turku in the BioNLP'11 Shared Task.

Jari Björne, Filip Ginter, Tapio Salakoski

BMC Bioinform., 2012

PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations.

Jari Björne, Sofie Van Landeghem, Sampo Pyysalo, Tomoko Ohta, Filip Ginter, Yves Van de Peer, Sophia Ananiadou, Tapio Salakoski

Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

2011

Extracting Contextualized Complex Biological Events with Rich Graph-Based Feature Sets.

Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala, Tapio Salakoski

Comput. Intell., 2011

U-Compare bio-event meta-service: compatible BioNLP event extraction services.

Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii

BMC Bioinform., 2011

Generalizing Biomedical Event Extraction.

Jari Björne, Tapio Salakoski

Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

2010

Event extraction on PubMed scale.

Filip Ginter, Jari Björne, Sampo Pyysalo

BMC Bioinform., 2010

Complex event extraction at PubMed scale.

Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski

Bioinform., 2010

Reconstruction of Semantic Relationships from Their Projections in Biomolecular Domain.

Juho Heimonen, Jari Björne, Tapio Salakoski

Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

Scaling up Biomedical Event Extraction to the Entire PubMed.

Jari Björne, Filip Ginter, Sampo Pyysalo, Jun'ichi Tsujii, Tapio Salakoski

Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

2009

Learning to Extract Biological Event and Relation Graphs.

Jari Björne, Filip Ginter, Juho Heimonen, Sampo Pyysalo, Tapio Salakoski

Proceedings of the 17th Nordic Conference of Computational Linguistics, 2009

Extracting Complex Biological Events with Rich Graph-Based Feature Sets.

Jari Björne, Juho Heimonen, Filip Ginter, Antti Airola, Tapio Pahikkala, Tapio Salakoski

Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

2008

Comparative analysis of five protein-protein interaction corpora.

Sampo Pyysalo, Antti Airola, Juho Heimonen, Jari Björne, Filip Ginter, Tapio Salakoski

BMC Bioinform., 2008

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning.

Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski

BMC Bioinform., 2008

A Graph Kernel for Protein-Protein Interaction Extraction.

Antti Airola, Sampo Pyysalo, Jari Björne, Tapio Pahikkala, Filip Ginter, Tapio Salakoski

Proceedings of the Workshop on Current Trends in Biomedical Natural Language Processing, 2008

2007

BioInfer: a corpus for information extraction in the biomedical domain.

Sampo Pyysalo, Filip Ginter, Juho Heimonen, Jari Björne, Jorma Boberg, Jouni Järvinen, Tapio Salakoski

BMC Bioinform., 2007