K. Bretonnel Cohen
Orcid: 0000-0003-1749-8290Affiliations:
- University of Colorado School of Medicine, Aurora, CO, USA
According to our database1,
K. Bretonnel Cohen
authored at least 123 papers
between 2002 and 2022.
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Bibliography
2022
High-quality gene/disease embedding in a multi-relational heterogeneous graph after a joint matrix/tensor decomposition.
J. Biomed. Informatics, 2022
2021
Unsupervised clinical relevancy ranking of structured medical records to retrieve condition-specific information in the emergency department.
Int. J. Medical Informatics, 2021
Briefings Bioinform., 2021
Proceedings of the 16th Conference of the European Chapter of the Association for Computational Linguistics: Tutorial Abstracts, 2021
Reproducibility in biomedical natural language processing: A FAIR approach to what we need to know.
Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021
2020
F1000Research, 2020
Proceedings of the JCDL '20: Proceedings of the ACM/IEEE Joint Conference on Digital Libraries in 2020, 2020
Proceedings of the JCDL '20: Proceedings of the ACM/IEEE Joint Conference on Digital Libraries in 2020, 2020
Proceedings of the 58th Annual Meeting of the Association for Computational Linguistics: Tutorial Abstracts, 2020
2019
BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services.
F1000Research, 2019
Bioinform., 2019
Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies.
Proceedings of the Fourth Conference on Machine Translation, 2019
Proceedings of the International Conference on Recent Advances in Natural Language Processing, 2019
Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019
An Active Gene Annotation Corpus and Its Application on Anti-epilepsy Drug Discovery.
Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019
2018
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018
A Modular Ontology for Modeling Service Provision in a Communication Network for Coordination of Care.
Proceedings of the Building Continents of Knowledge in Oceans of Data: The Future of Co-Created eHealth, 2018
Proceedings of the Eleventh International Conference on Language Resources and Evaluation, 2018
Proceedings of the 18th ACM/IEEE on Joint Conference on Digital Libraries, 2018
De l'intérêt des ontologies modulaires. Application à la modélisation de la prise en charge de la SLA.
Proceedings of the IC 2018 : 29es Journées francophones d'Ingénierie des Connaissances (Proceedings of the 29th French Knowledge Engineering Conference), 2018
Trigger Words Detection by Integrating Attention Mechanism into Bi-LSTM Neural Network - A Case Study in PubMED-Wide Trigger Words Detection for Pancreatic Cancer.
Proceedings of the Chinese Computational Linguistics and Natural Language Processing Based on Naturally Annotated Big Data, 2018
Guideline Design of an Active Gene Annotation Corpus for the Purpose of Drug Repurposing.
Proceedings of the 11th International Congress on Image and Signal Processing, 2018
CRF-LSTM Text Mining Method Unveiling the Pharmacological Mechanism of Off-target Side Effect of Anti-Multiple Myeloma Drugs.
Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018, 2018
2017
Erratum to: Replicability and reproducibility of research results for human language technology: introducing an LRE special section.
Lang. Resour. Evaluation, 2017
Replicability and reproducibility of research results for human language technology: introducing an LRE special section.
Lang. Resour. Evaluation, 2017
A nonparametric Bayesian method of translating machine learning scores to probabilities in clinical decision support.
BMC Bioinform., 2017
Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles.
BMC Bioinform., 2017
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017
Translational Morphosyntax: Distribution of Negation in Clinical Records and Biomedical Journal Articles.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017
Inter-Annotator Agreement and the Upper Limit on Machine Performance: Evidence from Biomedical Natural Language Processing.
Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017
CLEF eHealth 2017 Multilingual Information Extraction task Overview: ICD10 Coding of Death Certificates in English and French.
Proceedings of the Working Notes of CLEF 2017, 2017
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017
Proceedings of the AMIA 2017, 2017
2016
Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition.
J. Biomed. Semant., 2016
Crowdsourcing and curation: perspectives from biology and natural language processing.
Database J. Biol. Databases Curation, 2016
Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016
Proceedings of the Working Notes of CLEF 2016, 2016
Replicability of Research in Biomedical Natural Language Processing: a pilot evaluation for a coding task.
Proceedings of the Seventh International Workshop on Health Text Mining and Information Analysis, 2016
2015
Proceedings of the Biocomputing 2015: Proceedings of the Pacific Symposium, 2015
Proceedings of the Workshop on Biomedical Natural Language Processing, BioNLP@IJCNLP 2015, 2015
2014
Research and applications: Assessing the similarity of surface linguistic features related to epilepsy across pediatric hospitals.
J. Am. Medical Informatics Assoc., 2014
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters.
BMC Bioinform., 2014
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.
J. Biomed. Semant., 2014
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014
Proceedings of the Biocomputing 2014: Proceedings of the Pacific Symposium, 2014
Ontology Translation: A Case Study on Translating the Gene Ontology from English to German.
Proceedings of the Natural Language Processing and Information Systems, 2014
Sublanguage Corpus Analysis Toolkit: A tool for assessing the representativeness and sublanguage characteristics of corpora.
Proceedings of the Ninth International Conference on Language Resources and Evaluation, 2014
Proceedings of BioNLP, Baltimore, Maryland, USA, 2014
Temporal Expression Recognition for Cell Cycle Phase Concepts in Biomedical Literature.
Proceedings of BioNLP, Baltimore, Maryland, USA, 2014
2013
BMC Medical Informatics Decis. Mak., 2013
Database J. Biol. Databases Curation, 2013
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.
Database J. Biol. Databases Curation, 2013
UColorado_SOM: Extraction of Drug-Drug Interactions from Biomedical Text using Knowledge-rich and Knowledge-poor Features.
Proceedings of the 7th International Workshop on Semantic Evaluation, 2013
Proceedings of the Recent Advances in Natural Language Processing, 2013
Proceedings of the Recent Advances in Natural Language Processing, 2013
Proceedings of the Biocomputing 2013: Proceedings of the Pacific Symposium, 2013
Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, 2013
Earlier Identification of Epilepsy Surgery Candidates Using Natural Language Processing.
Proceedings of the 2013 Workshop on Biomedical Natural Language Processing, 2013
Proceedings of the Joint Workshop on NLP&LOD and SWAIE: Semantic Web, 2013
2012
The state of the art in text mining and natural language processing for pharmacogenomics.
J. Biomed. Informatics, 2012
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.
BMC Bioinform., 2012
Briefings Bioinform., 2012
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012
Assessment of Software Testing and Quality Assurance in Natural Language Processing Applications and a Linguistically Inspired Approach to Improving It.
Proceedings of the Trustworthy Eternal Systems via Evolving Software, Data and Knowledge, 2012
2011
IBM J. Res. Dev., 2011
Comput. Intell., 2011
BMC Bioinform., 2011
MetaMap is a Superior Baseline to a Standard Document Retrieval Engine for the Task of Finding Patient Cohorts in Clinical Free Text.
Proceedings of The Twentieth Text REtrieval Conference, 2011
Proceedings of the Biocomputing 2011: Proceedings of the Pacific Symposium, 2011
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011
A scaleable automated quality assurance technique for semantic representations and proposition banks.
Proceedings of the Fifth Linguistic Annotation Workshop, 2011
2010
Proceedings of the Handbook of Natural Language Processing, Second Edition., 2010
IEEE ACM Trans. Comput. Biol. Bioinform., 2010
The structural and content aspects of abstracts versus bodies of full text journal articles are different.
BMC Bioinform., 2010
Proceedings of the International Conference on Language Resources and Evaluation, 2010
Visualization and Language Processing for Supporting Analysis across the Biomedical Literature.
Proceedings of the Knowledge-Based and Intelligent Information and Engineering Systems, 2010
2009
J. Biomed. Informatics, 2009
Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD).
BMC Bioinform., 2009
The textual characteristics of traditional and Open Access scientific journals are similar.
BMC Bioinform., 2009
Bioinform., 2009
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009
2008
OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.
BMC Bioinform., 2008
Intrinsic Evaluation of Text Mining Tools May Not Predict Performance on Realistic Tasks.
Proceedings of the Biocomputing 2008, 2008
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008
Software Testing and the Naturally Occurring Data Assumption in Natural Language Processing.
Proceedings of the Software Engineering, 2008
2007
Rapid Pattern Development for Concept Recognition Systems: Application to Point mutations.
J. Bioinform. Comput. Biol., 2007
MutationFinder: a high-performance system for extracting point mutation mentions from text.
Bioinform., 2007
Proceedings of the Biocomputing 2007, 2007
Proceedings of the Biocomputing 2007, 2007
Proceedings of the Human Language Technology Conference of the North American Chapter of the Association of Computational Linguistics, 2007
Proceedings of the Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), 2007
Proceedings of the Biological, translational, and clinical language processing, 2007
2006
BMC Bioinform., 2006
Concept Recognition, Information Retrieval, and Machine Learning in Genomics Question-Answering.
Proceedings of the Fifteenth Text REtrieval Conference, 2006
Proceedings of the Biocomputing 2006, 2006
Evaluation of Lexical Methods for Detecting Relationships Between Concepts from Multiple Ontologies.
Proceedings of the Biocomputing 2006, 2006
Proceedings of the Workshop on Linking Natural Language and Biology, 2006
2005
BMC Bioinform., 2005
Proceedings of the Fourteenth Text REtrieval Conference, 2005
Proceedings of the Biocomputing 2005, 2005
Proceedings of the ACL-ISMB Workshop on Linking Biological Literature, 2005
Proceedings of the AMIA 2005, 2005
2004
Proceedings of the Artificial Intelligence Methods And Tools For Systems Biology, 2004
Proceedings of the Biocomputing 2004, 2004
2002
Proceedings of the ACL 2002 Workshop on Natural Language Processing in the Biomedical Domain, 2002