Ekaterina Buyko

According to our database, Ekaterina Buyko authored at least 18 papers between 2007 and 2012.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2012

The Extraction of Pharmacogenetic and Pharmacogenomic Relations - A Case Study Using PharmGKB.

Ekaterina Buyko, Elena Beisswanger, Udo Hahn

Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Iterative Refinement and Quality Checking of Annotation Guidelines - How to Deal Effectively with Semantically Sloppy Named Entity Types, such as Pathological Phenomena.

Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Erik Faessler, Jenny Traumüller, Susann Schröder, Kerstin Hornbostel

Proceedings of the Eighth International Conference on Language Resources and Evaluation, 2012

Active Learning-Based Corpus Annotation - The PathoJen Experience.

Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Erik Faessler

Proceedings of the AMIA 2012, 2012

2011

Syntactic Simplification and Semantic Enrichment - Trimming Dependency Graphs for Event Extraction.

Ekaterina Buyko, Erik Faessler, Joachim Wermter, Udo Hahn

Comput. Intell., 2011

U-Compare bio-event meta-service: compatible BioNLP event extraction services.

Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii

BMC Bioinform., 2011

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.

Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn

J. Biomed. Semant., 2011

Generating Semantics for the Life Sciences via Text Analytics.

Ekaterina Buyko, Udo Hahn

Proceedings of the 5th IEEE International Conference on Semantic Computing (ICSC 2011), 2011

Towards Automatic Pathway Generation from Biological Full-Text Publications.

Ekaterina Buyko, Jörg Linde, Steffen Priebe, Udo Hahn

Proceedings of the Advances in Intelligent Data Analysis X - 10th International Symposium, 2011

2010

Calbc Silver Standard Corpus.

Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan A. Kors, David Milward, Peter T. Corbett, Ekaterina Buyko, Elena Beisswanger, Udo Hahn

J. Bioinform. Comput. Biol., 2010

The CALBC Silver Standard Corpus for Biomedical Named Entities - A Study in Harmonizing the Contributions from Four Independent Named Entity Taggers.

Dietrich Rebholz-Schuhmann, Antonio José Jimeno-Yepes, Erik M. van Mulligen, Ning Kang, Jan A. Kors, David Milward, Peter T. Corbett, Ekaterina Buyko, Katrin Tomanek, Elena Beisswanger, Udo Hahn

Proceedings of the International Conference on Language Resources and Evaluation, 2010

The GeneReg Corpus for Gene Expression Regulation Events - An Overview of the Corpus and its In-Domain and Out-of-Domain Interoperability.

Ekaterina Buyko, Elena Beisswanger, Udo Hahn

Proceedings of the International Conference on Language Resources and Evaluation, 2010

Evaluating the Impact of Alternative Dependency Graph Encodings on Solving Event Extraction Tasks.

Ekaterina Buyko, Udo Hahn

Proceedings of the 2010 Conference on Empirical Methods in Natural Language Processing, 2010

2009

How Feasible and Robust is the Automatic Extraction of Gene Regulation Events? A Cross-Method Evaluation under Lab and Real-Life Conditions.

Udo Hahn, Katrin Tomanek, Ekaterina Buyko, Jung-Jae Kim, Dietrich Rebholz-Schuhmann

Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, 2009

Event Extraction from Trimmed Dependency Graphs.

Ekaterina Buyko, Erik Faessler, Joachim Wermter, Udo Hahn

Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

2008

Semantic Annotations for Biology: a Corpus Development Initiative at the Jena University Language & Information Engineering (JULIE) Lab.

Udo Hahn, Elena Beisswanger, Ekaterina Buyko, Michael Poprat, Katrin Tomanek, Joachim Wermter

Proceedings of the International Conference on Language Resources and Evaluation, 2008

Ontology-Based Interface Specifications for a NLP Pipeline Architecture.

Ekaterina Buyko, Christian Chiarcos, Antonio Pareja-Lora

Proceedings of the International Conference on Language Resources and Evaluation, 2008

Are Morpho-Syntactic Features More Predictive for the Resolution of Noun Phrase Coordination Ambiguity than Lexico-Semantic Similarity Scores?

Ekaterina Buyko, Udo Hahn

Proceedings of the COLING 2008, 2008

2007

An Annotation Type System for a Data-Driven NLP Pipeline.

Udo Hahn, Ekaterina Buyko, Katrin Tomanek, Scott Piao, John McNaught, Yoshimasa Tsuruoka, Sophia Ananiadou

Proceedings of the Linguistic Annotation Workshop, 2007