Tomoko Ohta

According to our database1, Tomoko Ohta authored at least 54 papers between 1999 and 2016.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Links

On csauthors.net:

Bibliography

2016
Cell line name recognition in support of the identification of synthetic lethality in cancer from text.
Bioinform., 2016

Typed Entity and Relation Annotation on Computer Science Papers.
Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016

2015
Overview of the Cancer Genetics and Pathway Curation tasks of BioNLP Shared Task 2013.
BMC Bioinform., December, 2015

2013
Wide coverage biomedical event extraction using multiple partially overlapping corpora.
BMC Bioinform., 2013

BioCause: Annotating and analysing causality in the biomedical domain.
BMC Bioinform., 2013

A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text.
Bioinform., 2013

Overview of the Cancer Genetics (CG) task of BioNLP Shared Task 2013.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

Overview of the Pathway Curation (PC) task of BioNLP Shared Task 2013.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

Overview of BioNLP Shared Task 2013.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

2012
Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011.
BMC Bioinform., 2012

Event extraction across multiple levels of biological organization.
Bioinform., 2012

brat: a Web-based Tool for NLP-Assisted Text Annotation.
Proceedings of the EACL 2012, 2012

New Resources and Perspectives for Biomedical Event Extraction.
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

PubMed-Scale Event Extraction for Post-Translational Modifications, Epigenetics and Protein Structural Relations.
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, 2012

Bridging the Gap Between Scope-based and Event-based Negation/Speculation Annotations: A Bridge Not Too Far.
Proceedings of the Workshop on Extra-Propositional Aspects of Meaning in Computational Linguistics, 2012

2011
Extracting Bio-molecular Events from literature - the BioNLP'09 Shared Task.
Comput. Intell., 2011

U-Compare bio-event meta-service: compatible BioNLP event extraction services.
BMC Bioinform., 2011

Linguistic scope-based and biological event-based speculation and negation annotations in the BioScope and Genia Event corpora.
J. Biomed. Semant., 2011

An analysis of gene/protein associations at PubMed scale.
J. Biomed. Semant., 2011

Event extraction for DNA methylation.
J. Biomed. Semant., 2011

Ontology design patterns to disambiguate relations between genes and gene products in GENIA.
J. Biomed. Semant., 2011

BioNLP Shared Task 2011: Supporting Resources.
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

Overview of the Entity Relations (REL) supporting task of BioNLP Shared Task 2011.
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

Overview of the Infectious Diseases (ID) task of BioNLP Shared Task 2011.
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

Towards Exhaustive Event Extraction for Protein Modifications.
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011

Overview of the Epigenetics and Post-translational Modifications (EPI) task of BioNLP Shared Task 2011.
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

From Pathways to Biomolecular Events: Opportunities and Challenges.
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011

Overview of BioNLP Shared Task 2011.
Proceedings of BioNLP Shared Task 2011 Workshop, Portland, Oregon, USA, June 24, 2011, 2011

2010
Improving the Inter-Corpora Compatibility for protein Annotations.
J. Bioinform. Comput. Biol., 2010

A Re-Evaluation of Biomedical Named Entity-Term Relations.
J. Bioinform. Comput. Biol., 2010

Medie and Info-pubmed: 2010 update.
BMC Bioinform., 2010

Linguistic scope-based and biological event-based speculation and negation annotations in the Genia Event and BioScope corpora.
Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, 2010

Applying ontology design patterns to the implementation of relations in GENIA.
Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, 2010

Towards Event Extraction from Full Texts on Infectious Diseases.
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

Event Extraction for Post-Translational Modifications.
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

Integration of Static Relations to Enhance Event Extraction from Text.
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

2009
Static Relations: a Piece in the Biomedical Information Extraction Puzzle.
Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, 2009

Incorporating GENETAG-style annotation to GENIA corpus.
Proceedings of the BioNLP Workshop, BioNLP@HLT-NAACL 2009, 2009

Overview of BioNLP'09 Shared Task on Event Extraction.
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

2008
New challenges for text mining: mapping between text and manually curated pathways.
BMC Bioinform., 2008

Corpus annotation for mining biomedical events from literature.
BMC Bioinform., 2008

From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical Literature.
Proceedings of the 6th Asia-Pacific Bioinformatics Conference, 2008

2006
Linguistic and Biological Annotations of Biological Interaction Events.
Proceedings of the Fifth International Conference on Language Resources and Evaluation, 2006

Automatic Construction of Predicate-argument Structure Patterns for Biomedical Information Extraction.
Proceedings of the EMNLP 2006, 2006

An Intelligent Search Engine and GUI-based Efficient MEDLINE Search Tool Based on Deep Syntactic Parsing.
Proceedings of the ACL 2006, 2006

Semantic Retrieval for the Accurate Identification of Relational Concepts in Massive Textbases.
Proceedings of the ACL 2006, 2006

2005
Developing a Robust Part-of-Speech Tagger for Biomedical Text.
Proceedings of the Advances in Informatics, 2005

Syntax Annotation for the GENIA Corpus.
Proceedings of the Natural Language Processing - IJCNLP 2005, Second International Joint Conference, Jeju Island, Republic of Korea, October 11-13, 2005, 2005

2003
A Robust Retrieval Engine for Proximal and Structural Search.
Proceedings of the Human Language Technology Conference of the North American Chapter of the Association for Computational Linguistics, 2003

GENIA corpus - a semantically annotated corpus for bio-textmining.
Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

Encoding Biomedical Resources in TEI: The Case of the GENIA Corpus.
Proceedings of the Workshop on Natural Language Processing in Biomedicine, 2003

Stretching TEI: Converting the Genia Corpus.
Proceedings of 4th International Workshop on Linguistically Interpreted Corpora, 2003

2000
Building an Annotated Corpus in the Molecular-Biology Domain.
Proceedings of the COLING-2000 Workshop on Semantic Annotation and Intelligent Content, 2000

1999
The GENIA project: corpus-based knowledge acquisition and information extraction from genome research papers.
Proceedings of the EACL 1999, 1999


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