Jonathan G. Lees

According to our database, Jonathan G. Lees authored at least 23 papers between 2006 and 2021.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2021

Biological impact of mutually exclusive exon switching.

Su Datt Lam, M. Madan Babu, Jonathan G. Lees, Christine A. Orengo

PLoS Comput. Biol., 2021

CATH: increased structural coverage of functional space.

Ian Sillitoe, Nicola Bordin, Natalie L. Dawson, Vaishali P. Waman, Paul Ashford, Harry M. Scholes, Camilla S. M. Pang, Laurel Woodridge, Clemens Rauer, Neeladri Sen, Mahnaz Abbasian, Sean Le Cornu, Su Datt Lam, Karel Berka, Ivana Hutarová Vareková, Radka Svobodová Vareková, Jonathan G. Lees, Christine A. Orengo

Nucleic Acids Res., 2021

2019

Protein Structure Classification.

Natalie L. Dawson, Sayoni Das, Jonathan G. Lees, Christine A. Orengo

Proceedings of the Encyclopedia of Bioinformatics and Computational Biology - Volume 2, 2019

CATH: expanding the horizons of structure-based functional annotations for genome sequences.

Ian Sillitoe, Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, Paul Ashford, Adeyelu Tolulope, Harry M. Scholes, Ilya Senatorov, Andra Bujan, Fatima Ceballos Rodriguez-Conde, Benjamin Dowling, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2019

cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly.

Tony E. Lewis, Ian Sillitoe, Jonathan G. Lees

Bioinform., 2019

2018

Gene3D: Extensive prediction of globular domains in proteins.

Tony E. Lewis, Ian Sillitoe, Natalie L. Dawson, Su Datt Lam, Tristan Clarke, David A. Lee, Christine A. Orengo, Jonathan G. Lees

Nucleic Acids Res., 2018

2017

Analysis of temporal transcription expression profiles reveal links between protein function and developmental stages of Drosophila melanogaster.

Cen Wan, Jonathan G. Lees, Federico Minneci, Christine A. Orengo, David T. Jones

PLoS Comput. Biol., 2017

CATH: an expanded resource to predict protein function through structure and sequence.

Natalie L. Dawson, Tony E. Lewis, Sayoni Das, Jonathan G. Lees, David A. Lee, Paul Ashford, Christine A. Orengo, Ian Sillitoe

Nucleic Acids Res., 2017

2016

Gene3D: expanding the utility of domain assignments.

Su Datt Lam, Natalie L. Dawson, Sayoni Das, Ian Sillitoe, Paul Ashford, David A. Lee, Sonja Lehtinen, Christine A. Orengo, Jonathan G. Lees

Nucleic Acids Res., 2016

2015

CATH: comprehensive structural and functional annotations for genome sequences.

Ian Sillitoe, Tony E. Lewis, Alison L. Cuff, Sayoni Das, Paul Ashford, Natalie L. Dawson, Nicholas Furnham, Roman A. Laskowski, David A. Lee, Jonathan G. Lees, Sonja Lehtinen, Romain A. Studer, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2015

CATH FunFHMMer web server: protein functional annotations using functional family assignments.

Sayoni Das, Ian Sillitoe, David A. Lee, Jonathan G. Lees, Natalie L. Dawson, John Ward, Christine A. Orengo

Nucleic Acids Res., 2015

FUN-L: gene prioritization for RNAi screens.

Jonathan G. Lees, Jean-Karim Hériché, Ian Morilla, José María Fernández, Priit Adler, Martin Krallinger, Jaak Vilo, Alfonso Valencia, Jan Ellenberg, Juan A. G. Ranea, Christine A. Orengo

Bioinform., 2015

Functional classification of CATH superfamilies: a domain-based approach for protein function annotation.

Sayoni Das, David A. Lee, Ian Sillitoe, Natalie L. Dawson, Jonathan G. Lees, Christine A. Orengo

Bioinform., 2015

2014

Gene3D: Multi-domain annotations for protein sequence and comparative genome analysis.

Jonathan G. Lees, David A. Lee, Romain A. Studer, Natalie L. Dawson, Ian Sillitoe, Sayoni Das, Corin Yeats, Benoit H. Dessailly, Robert Rentzsch, Christine A. Orengo

Nucleic Acids Res., 2014

2013

New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures.

Ian Sillitoe, Alison L. Cuff, Benoit H. Dessailly, Natalie L. Dawson, Nicholas Furnham, David A. Lee, Jonathan G. Lees, Tony E. Lewis, Romain A. Studer, Robert Rentzsch, Corin Yeats, Janet M. Thornton, Christine A. Orengo

Nucleic Acids Res., 2013

2012

Gene3D: a domain-based resource for comparative genomics, functional annotation and protein network analysis.

Jonathan G. Lees, Corin Yeats, James Richard Perkins, Ian Sillitoe, Robert Rentzsch, Benoit H. Dessailly, Christine A. Orengo

Nucleic Acids Res., 2012

2011

The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences.

Corin Yeats, Jonathan G. Lees, Phil Carter, Ian Sillitoe, Christine A. Orengo

Nucleic Acids Res., 2011

2010

Finding the "Dark Matter" in Human and Yeast Protein Network Prediction and Modelling.

Juan A. G. Ranea, Ian Morilla, Jonathan G. Lees, Adam James Reid, Corin Yeats, Andrew B. Clegg, Francisca Sánchez-Jiménez, Christine A. Orengo

PLoS Comput. Biol., 2010

Gene3D: merging structure and function for a Thousand genomes.

Jonathan G. Lees, Corin Yeats, Oliver Redfern, Andrew B. Clegg, Christine A. Orengo

Nucleic Acids Res., 2010

2008

Gene3D: comprehensive structural and functional annotation of genomes.

Corin Yeats, Jonathan G. Lees, Adam James Reid, Paul Kellam, Nigel J. Martin, Xinhui Liu, Christine A. Orengo

Nucleic Acids Res., 2008

Combining sequence-based prediction methods and circular dichroism and infrared spectroscopic data to improve protein secondary structure determinations.

Jonathan G. Lees, Robert W. Janes

BMC Bioinform., 2008

2006

Novel methods for secondary structure determination using low wavelength (VUV) circular dichroism spectroscopic data.

Jonathan G. Lees, Andrew J. Miles, Robert W. Janes, B. A. Wallace

BMC Bioinform., 2006

A reference database for circular dichroism spectroscopy covering fold and secondary structure space.

Jonathan G. Lees, Andrew J. Miles, Frank Wien, B. A. Wallace

Bioinform., 2006