Georgios V. Gkoutos

Orcid: 0000-0002-2061-091X

  • University of Birmingham, College of Medical and Dental Sciences, UK

According to our database1, Georgios V. Gkoutos authored at least 76 papers between 2001 and 2024.

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In proceedings 
PhD thesis 


Online presence:



A novel generative adversarial networks modelling for the class imbalance problem in high dimensional omics data.
BMC Medical Informatics Decis. Mak., December, 2024

Development of Automated Neural Network Prediction for Echocardiographic Left ventricular Ejection Fraction.
CoRR, 2024

Klarigi: Characteristic explanations for semantic biomedical data.
Comput. Biol. Medicine, February, 2023

A survey on clinical natural language processing in the United Kingdom from 2007 to 2022.
npj Digit. Medicine, 2022

Evaluating semantic similarity methods for comparison of text-derived phenotype profiles.
BMC Medical Informatics Decis. Mak., 2022

CACONET: a novel classification framework for microbial correlation networks.
Bioinform., 2022

Graph characterisation using graphlet-based entropies.
Pattern Recognit. Lett., 2021

Ensemble learning for poor prognosis predictions: A case study on SARS-CoV-2.
J. Am. Medical Informatics Assoc., 2021

A Sentence Classification Framework to Identify Geometric Errors in Radiation Therapy from Relevant Literature.
Inf., 2021

Effects of Negation and Uncertainty Stratification on Text-Derived Patient Profile Similarity.
Frontiers Digit. Health, 2021

Learning from learning machines: a new generation of AI technology to meet the needs of science.
CoRR, 2021

Multi-faceted semantic clustering with text-derived phenotypes.
Comput. Biol. Medicine, 2021

Towards similarity-based differential diagnostics for common diseases.
Comput. Biol. Medicine, 2021

A fast, accurate, and generalisable heuristic-based negation detection algorithm for clinical text.
Comput. Biol. Medicine, 2021

Development and application of the ocular immune-mediated inflammatory diseases ontology enhanced with synonyms from online patient support forum conversation.
Comput. Biol. Medicine, 2021

NFnetFu: A novel workflow for microbiome data fusion.
Comput. Biol. Medicine, 2021

Improved characterisation of clinical text through ontology-based vocabulary expansion.
J. Biomed. Semant., 2021

Linking common human diseases to their phenotypes; development of a resource for human phenomics.
J. Biomed. Semant., 2021

Nesterov Accelerated ADMM for Fast Diffeomorphic Image Registration.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

Exploring the Performance of Baseline Text Mining Frameworks for Early Prediction of Self Harm Over Social Media.
Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to, 2021

Exploring Sentiment as a Potential Indicator of Bias in Disease Ontologies.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies.
BMC Medical Informatics Decis. Mak., 2020

Jabberwocky: an ontology-aware toolkit for manipulating text.
J. Open Source Softw., 2020

Aging Neuro-Behavior Ontology.
Appl. Ontology, 2020

DeepPVP: phenotype-based prioritization of causative variants using deep learning.
BMC Bioinform., December, 2019

'Computable' Phenotypes Enable Comparative and Predictive Phenomics Among Plant Species and Across Domains of Life.
Proceedings of the Application of Semantic Technology in Biodiversity Science, 2018

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.
Nucleic Acids Res., 2018

Ontology-based validation and identification of regulatory phenotypes.
Bioinform., 2018

The anatomy of phenotype ontologies: principles, properties and applications.
Briefings Bioinform., 2018

Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings.
Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, 2018

Semantic prioritization of novel causative genomic variants.
PLoS Comput. Biol., 2017

Integrating phenotype ontologies with PhenomeNET.
J. Biomed. Semant., 2017

Using AberOWL for fast and scalable reasoning over BioPortal ontologies.
J. Biomed. Semant., 2016

The flora phenotype ontology (FLOPO): tool for integrating morphological traits and phenotypes of vascular plants.
J. Biomed. Semant., 2016

DermO; an ontology for the description of dermatologic disease.
J. Biomed. Semant., 2016

Overview of the interactive task in BioCreative V.
Database J. Biol. Databases Curation, 2016

To MIREOT or not to MIREOT? A Case Study of the Impact of Using MIREOT in the Experimental Factor Ontology (EFO).
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Updates to the AberOWL Ontology Repository.
Proceedings of the Joint International Conference on Biological Ontology and BioCreative, 2016

Large-Scale Reasoning over Functions in Biomedical Ontologies.
Proceedings of the Formal Ontology in Information Systems, 2016

Aber-OWL: a framework for ontology-based data access in biology.
BMC Bioinform., 2015

Similarity-based search of model organism, disease and drug effect phenotypes.
J. Biomed. Semant., 2015

The role of ontologies in biological and biomedical research: a functional perspective.
Briefings Bioinform., 2015

Visualising Ontologies with AberOWL.
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

Experiences with Aber-OWL, an Ontology Repository with OWL EL Reasoning.
Proceedings of the Ontology Engineering, 2015

AberOWL: an ontology portal with OWL EL reasoning.
Proceedings of the International Conference on Biomedical Ontology, 2015

Using Aber-OWL for fast and scalable reasoning over BioPortal ontologies.
Proceedings of the International Conference on Biomedical Ontology, 2015

The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data.
Nucleic Acids Res., 2014

Mouse model phenotypes provide information about human drug targets.
Bioinform., 2014

The mouse pathology ontology, MPATH; structure and applications.
J. Biomed. Semant., 2013

The Drosophila phenotype ontology.
J. Biomed. Semant., 2013

Representing physiological processes and their participants with PhysioMaps.
J. Biomed. Semant., 2013

Evaluation of research in biomedical ontologies.
Briefings Bioinform., 2013

Towards quantitative measures in applied ontology
CoRR, 2012

Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology.
J. Biomed. Semant., 2012

Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes.
J. Biomed. Semant., 2012

An infrastructure for ontology-based information systems in biomedicine: RICORDO case study.
Bioinform., 2012

Semantic integration of physiology phenotypes with an application to the Cellular Phenotype Ontology.
Bioinform., 2012

Identifying aberrant pathways through integrated analysis of knowledge in pharmacogenomics.
Bioinform., 2012

The Units Ontology: a tool for integrating units of measurement in science.
Database J. Biol. Databases Curation, 2012

Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug Repurposing.
Proceedings of the Biocomputing 2012: Proceedings of the Pacific Symposium, 2012

Integrating systems biology models and biomedical ontologies.
BMC Syst. Biol., 2011

Improving ontologies by automatic reasoning and evaluation of logical definitions.
BMC Bioinform., 2011

A common layer of interoperability for biomedical ontologies based on OWL EL.
Bioinform., 2011

PIDO: the primary immunodeficiency disease ontology.
Bioinform., 2011

An Advanced Strategy for Integration of Biological Measurement Data.
Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Finding and sharing: new approaches to registries of databases and services for the biomedical sciences.
Database J. Biol. Databases Curation, 2010

Towards a Disease Ontology.
Proceedings of the Anatomy Ontologies for Bioinformatics, Principles and Practice, 2008

NLP and Phenotypes: using Ontologies to link Human Diseases to Animal Models.
Proceedings of the Ontologies and Text Mining for Life Sciences: Current Status and Future Perspectives, 24.03., 2008

EMPReSS: European Mouse Phenotyping Resource for Standardized Screens.
Bioinform., 2005

CRAVE: a database, middleware and visualization system for phenotype ontologies.
Bioinform., 2005

Building Mouse Phenotype Ontologies.
Proceedings of the Biocomputing 2004, 2004

Chemical Machine Vision: Automated Extraction of Chemical Metadata from Raster Images.
J. Chem. Inf. Comput. Sci., 2003

Internet-based resource discovery in chemo-bioinformatics.
PhD thesis, 2002

Chemical Markup, XML, and the World-Wide Web. 3. Toward a Signed Semantic Chemical Web of Trust.
J. Chem. Inf. Comput. Sci., 2001

JChemTidy: A Tool for Converting Chemical Web Document Collections to an XHTML Representation.
J. Chem. Inf. Comput. Sci., 2001