Adrien Rougny

According to our database, Adrien Rougny authored at least 12 papers between 2014 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance.

Alexander Mazein, Marcio Luis Acencio, Irina Balaur, Adrien Rougny, Danielle Welter, Anna Niarakis, Diana Ramirez Ardila, Ugur Dogrusoz, Piotr Gawron, Venkata P. Satagopam, Wei Gu, Andreas Kremer, Reinhard Schneider, Marek Ostaszewski

Frontiers Bioinform., May, 2023

StonPy: a tool to parse and query collections of SBGN maps in a graph database.

Adrien Rougny, Irina Balaur, Augustin Luna, Alexander Mazein

Bioinform., March, 2023

2021

A detailed map of coupled circadian clock and cell cycle with qualitative dynamics validation.

Adrien Rougny, Loïc Paulevé, Michèle Teboul, Franck Delaunay

BMC Bioinform., 2021

SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks.

Adrien Rougny, Vasundra Touré, John Albanese, Dagmar Waltemath, Denis Shirshov, Anatoly A. Sorokin, Gary D. Bader, Michael L. Blinov, Alexander Mazein

Briefings Bioinform., 2021

Reusability and composability in process description maps: RAS-RAF-MEK-ERK signalling.

Alexander Mazein, Adrien Rougny, Jonathan R. Karr, Julio Saez-Rodriguez, Marek Ostaszewski, Reinhard Schneider

Briefings Bioinform., 2021

2020

Systems biology graphical notation markup language (SBGNML) version 0.3.

Frank T. Bergmann, Tobias Czauderna, Ugur Dogrusoz, Adrien Rougny, Andreas Dräger, Vasundra Touré, Alexander Mazein, Michael L. Blinov, Augustin Luna

J. Integr. Bioinform., 2020

2019

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.

Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna

J. Integr. Bioinform., 2019

sbgntikz - a TikZ library to draw SBGN maps.

Adrien Rougny

Bioinform., 2019

2016

Méthodes qualitatives pour la construction et l'analyse des réseaux moléculaires SBGN. (Qualitative methods for the construction and the analysis of SBGN molecular networks).

Adrien Rougny

PhD thesis, 2016

Qualitative dynamics semantics for SBGN process description.

Adrien Rougny, Christine Froidevaux, Laurence Calzone, Loïc Paulevé

BMC Syst. Biol., 2016

2015

Completing signaling networks by abductive reasoning with perturbation experiments.

Adrien Rougny, Yoshitaka Yamamoto, Hidetomo Nabeshima, Gauvain Bourgne, Anne Poupon, Katsumi Inoue, Christine Froidevaux

Proceedings of the Late Breaking Papers of the 25th International Conference on Inductive Logic Programming, 2015

2014

Completing SBGN-AF Networks by Logic-Based Hypothesis Finding.

Yoshitaka Yamamoto, Adrien Rougny, Hidetomo Nabeshima, Katsumi Inoue, Hisao Moriya, Christine Froidevaux, Koji Iwanuma

Proceedings of the Formal Methods in Macro-Biology - First International Conference, 2014