Irina Balaur

According to our database, Irina Balaur authored at least 18 papers between 2012 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance.

Alexander Mazein, Marcio Luis Acencio, Irina Balaur, Adrien Rougny, Danielle Welter, Anna Niarakis, Diana Ramirez Ardila, Ugur Dogrusoz, Piotr Gawron, Venkata P. Satagopam, Wei Gu, Andreas Kremer, Reinhard Schneider, Marek Ostaszewski

Frontiers Bioinform., May, 2023

StonPy: a tool to parse and query collections of SBGN maps in a graph database.

Adrien Rougny, Irina Balaur, Augustin Luna, Alexander Mazein

Bioinform., March, 2023

Experiences From FAIRifying Community Data and FAIR Infrastructure in Biomedical Research Domains.

Dagmar Waltemath, Esther Thea Inau, Lea Michaelis, Venkata P. Satagopam, Irina Balaur

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

2022

GraphML-SBGN bidirectional converter for metabolic networks.

Irina Balaur, Ludovic Roy, Vasundra Touré, Alexander Mazein, Charles Auffray

J. Integr. Bioinform., 2022

2020

cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats.

Irina Balaur, Ludovic Roy, Alexander Mazein, S. Gökberk Karaca, Ugur Dogrusoz, Emmanuel Barillot, Andrei Yu. Zinovyev

Bioinform., 2020

Human-like layout algorithms for signalling hypergraphs: outlining requirements.

Martin Siebenhaller, Sune S. Nielsen, Fintan McGee, Irina Balaur, Charles Auffray, Alexander Mazein

Briefings Bioinform., 2020

2019

Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0.

Adrien Rougny, Vasundra Touré, Stuart L. Moodie, Irina Balaur, Tobias Czauderna, Hanna Borlinghaus, Ugur Dogrusoz, Alexander Mazein, Andreas Dräger, Michael L. Blinov, Alice Villéger, Robin Haw, Emek Demir, Huaiyu Mi, Anatoly A. Sorokin, Falk Schreiber, Augustin Luna

J. Integr. Bioinform., 2019

2018

A computational framework for complex disease stratification from multiple large-scale datasets.

Bertrand De Meulder, Diane Lefaudeux, Aruna T. Bansal, Alexander Mazein, Amphun Chaiboonchoe, Hassan Ahmed, Irina Balaur, Mansoor A. S. Saqi, Johann Pellet, Stéphane Ballereau, Nathanaël Lemonnier, Kai Sun, Ioannis Pandis, Xian Yang, Manohara Batuwitage, Kosmas Kretsos, Jonathan van Eyll, Alun Bedding, Timothy Davison, Paul Dodson, Christopher Larminie, Anthony D. Postle, Julie Corfield, Ratko Djukanovic, Kian Fan Chung, Ian M. Adcock, Yike Guo, Peter J. Sterk, Alexander Manta, Anthony Rowe, Frédéric Baribaud, Charles Auffray

BMC Syst. Biol., 2018

2017

EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer.

Irina Balaur, Mansoor A. S. Saqi, Ana Barat, Artem Lysenko, Alexander Mazein, Christopher J. Rawlings, Heather J. Ruskin, Charles Auffray

J. Comput. Biol., 2017

Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks.

Irina Balaur, Alexander Mazein, Mansoor A. S. Saqi, Artem Lysenko, Christopher J. Rawlings

Bioinform., 2017

2016

STON: exploring biological pathways using the SBGN standard and graph databases.

Vasundra Touré, Alexander Mazein, Dagmar Waltemath, Irina Balaur, Mansoor A. S. Saqi, Ron Henkel, Johann Pellet, Charles Auffray

BMC Bioinform., 2016

Representing and querying disease networks using graph databases.

Artem Lysenko, Irina A. Roznovat, Mansoor A. S. Saqi, Alexander Mazein, Christopher J. Rawlings, Charles Auffray

BioData Min., 2016

2014

Building cross-scale models of epigenetic mechanisms.

Heather J. Ruskin, Dimitri Perrin, Irina A. Roznovat

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

A computational analysis on methylation inhibition during intestinal cancer initiation.

Irina A. Roznovat, Heather J. Ruskin

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

LogisticCrypt - A logistic model of intestinal crypt structure.

Irina A. Roznovat, Heather J. Ruskin

Proceedings of the 2014 IEEE International Conference on Bioinformatics and Biomedicine, 2014

2013

Interdependencies of Genetic and Epigenetic Events in a Computational Model for Colon Cancer Dynamics.

Irina-Afrodita Roznovat, Heather J. Ruskin

ERCIM News, 2013

Methylation Inhibitors and Carcinogens in an Agent-Based Model for Colon Crypt Dynamics during Cancer Development.

Irina A. Roznovat, Heather J. Ruskin

Proceedings of the Seventh UKSim/AMSS European Modelling Symposium, 2013

2012

A computational model for genetic and epigenetic signals in colon cancer.

Irina A. Roznovat, Heather J. Ruskin

Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012