Matthias König

Affiliations:
  • Humboldt-University Berlin, Institute for Theoretical Biology, Berlin, Germany


According to our database1, Matthias König authored at least 26 papers between 2012 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2023
Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022.
J. Integr. Bioinform., March, 2023

libRoadRunner 2.0: a high performance SBML simulation and analysis library.
Bioinform., January, 2023

2022
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Nucleic Acids Res., 2022

BioSimulators: a central registry of simulation engines and services for recommending specific tools.
CoRR, 2022

The systems biology simulation core library.
Bioinform., 2022

2021
PK-DB: pharmacokinetics database for individualized and stratified computational modeling.
Nucleic Acids Res., 2021

The simulation experiment description markup language (SED-ML): language specification for level 1 version 4.
J. Integr. Bioinform., 2021

Specifications of standards in systems and synthetic biology: status and developments in 2021.
J. Integr. Bioinform., 2021

OMEX metadata specification (version 1.2).
J. Integr. Bioinform., 2021

2020
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).
J. Integr. Bioinform., 2020

Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1.
J. Integr. Bioinform., 2020

Specifications of standards in systems and synthetic biology: status and developments in 2020.
J. Integr. Bioinform., 2020

Open modeling and exchange (OMEX) metadata specification version 1.0.
J. Integr. Bioinform., 2020

2019
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.
J. Integr. Bioinform., 2019

The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
J. Integr. Bioinform., 2019

Harmonizing semantic annotations for computational models in biology.
Briefings Bioinform., 2019

2018
Tellurium notebooks - An environment for reproducible dynamical modeling in systems biology.
PLoS Comput. Biol., 2018

Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3).
J. Integr. Bioinform., 2018

Tellurium: An extensible python-based modeling environment for systems and synthetic biology.
Biosyst., 2018

2016
Toward Community Standards and Software for Whole-Cell Modeling.
IEEE Trans. Biomed. Eng., 2016

cy3sabiork: A Cytoscape app for visualizing kinetic data from SABIO-RK.
F1000Research, 2016

Challenges and opportunities for system biology standards and tools in medical research.
Proceedings of the 7th Workshop on Ontologies and Data in Life Sciences, 2016

2015
Pathobiochemical signatures of cholestatic liver disease in bile duct ligated mice.
BMC Syst. Biol., 2015

libRoadRunner: a high performance SBML simulation and analysis library.
Bioinform., 2015

2012
Quantifying the Contribution of the Liver to Glucose Homeostasis: A Detailed Kinetic Model of Human Hepatic Glucose Metabolism.
PLoS Comput. Biol., 2012

CySBML: a Cytoscape plugin for SBML.
Bioinform., 2012


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